mRNA_P-canaliculata_contig102017.311.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig102017.311.1
Unique NamemRNA_P-canaliculata_contig102017.311.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig102017.311.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig102017contigP-canaliculata_contig102017:3..522 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size521
Cds size519
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815593.3439429-CDS-P-canaliculata_contig102017:2..5211622815593.3439429-CDS-P-canaliculata_contig102017:2..521Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102017 3..521 +
1693494155.5225475-CDS-P-canaliculata_contig102017:2..5211693494155.5225475-CDS-P-canaliculata_contig102017:2..521Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102017 3..521 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig102017.311.1prot_P-canaliculata_contig102017.311.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig102017 3..521 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig102017.311.1

>prot_P-canaliculata_contig102017.311.1 ID=prot_P-canaliculata_contig102017.311.1|Name=mRNA_P-canaliculata_contig102017.311.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=173bp
SRTHGNSSDGSHNSHLHGNSSSGGNPPDPGLAGRDHLPNSRTRGPPGSGH
PLNSSTVAGGPTRGDIIGEAISRTGSGPCVGGAVRRSISPRTAGQKRLHP
CDSIIRMRRHPFQEPTPRSATLPPLPPGHHTTATRLPLRCHRRPDLSAQP
RELHLPSAPPSESDWNFSSGQSR
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mRNA from alignment at P-canaliculata_contig102017:3..522+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig102017.311.1 ID=mRNA_P-canaliculata_contig102017.311.1|Name=mRNA_P-canaliculata_contig102017.311.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=520bp|location=Sequence derived from alignment at P-canaliculata_contig102017:3..522+ (Pelvetia canaliculata dioecious)
AGTCGCACGCATGGCAACAGCAGCGACGGCAGCCACAACAGTCACCTGCA
TGGCAACAGCAGCAGCGGTGGGAACCCCCCGGACCCTGGTCTAGCTGGGA
GAGACCACCTCCCCAACAGCAGAACACGTGGGCCGCCTGGGAGCGGCCAC
CCCCTCAACAGCAGTACCGTAGCGGGAGGTCCCACCCGCGGAGACATCAT
CGGGGAGGCGATCAGCCGCACTGGCAGCGGGCCCTGTGTCGGTGGTGCGG
TGAGGAGGAGCATTTCCCCGCGAACTGCAGGACAGAAGCGTCTGCACCCG
TGCGACAGCATCATCCGAATGCGGCGTCATCCTTTTCAGGAGCCTACGCC
GCGCAGCGCGACACTTCCTCCCCTCCCTCCTGGACATCACACGACAGCTA
CGCGTCTGCCCCTCCGATGCCATCGCCGCCCGGATCTGTCGGCCCAACCA
CGCGAACTCCACCTCCCATCGGCGCCCCCCTCGGAATCTGATTGGAACTT
CTCCTCCGGGCAATCCCGAG
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Coding sequence (CDS) from alignment at P-canaliculata_contig102017:3..522+

>mRNA_P-canaliculata_contig102017.311.1 ID=mRNA_P-canaliculata_contig102017.311.1|Name=mRNA_P-canaliculata_contig102017.311.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1038bp|location=Sequence derived from alignment at P-canaliculata_contig102017:3..522+ (Pelvetia canaliculata dioecious)
AGTCGCACGCATGGCAACAGCAGCGACGGCAGCCACAACAGTCACCTGCA
TGGCAACAGCAGCAGCGGTGGGAACCCCCCGGACCCTGGTCTAGCTGGGA
GAGACCACCTCCCCAACAGCAGAACACGTGGGCCGCCTGGGAGCGGCCAC
CCCCTCAACAGCAGTACCGTAGCGGGAGGTCCCACCCGCGGAGACATCAT
CGGGGAGGCGATCAGCCGCACTGGCAGCGGGCCCTGTGTCGGTGGTGCGG
TGAGGAGGAGCATTTCCCCGCGAACTGCAGGACAGAAGCGTCTGCACCCG
TGCGACAGCATCATCCGAATGCGGCGTCATCCTTTTCAGGAGCCTACGCC
GCGCAGCGCGACACTTCCTCCCCTCCCTCCTGGACATCACACGACAGCTA
CGCGTCTGCCCCTCCGATGCCATCGCCGCCCGGATCTGTCGGCCCAACCA
CGCGAACTCCACCTCCCATCGGCGCCCCCCTCGGAATCTGATTGGAACTT
CTCCTCCGGGCAATCCCGAAGTCGCACGCATGGCAACAGCAGCGACGGCA
GCCACAACAGTCACCTGCATGGCAACAGCAGCAGCGGTGGGAACCCCCCG
GACCCTGGTCTAGCTGGGAGAGACCACCTCCCCAACAGCAGAACACGTGG
GCCGCCTGGGAGCGGCCACCCCCTCAACAGCAGTACCGTAGCGGGAGGTC
CCACCCGCGGAGACATCATCGGGGAGGCGATCAGCCGCACTGGCAGCGGG
CCCTGTGTCGGTGGTGCGGTGAGGAGGAGCATTTCCCCGCGAACTGCAGG
ACAGAAGCGTCTGCACCCGTGCGACAGCATCATCCGAATGCGGCGTCATC
CTTTTCAGGAGCCTACGCCGCGCAGCGCGACACTTCCTCCCCTCCCTCCT
GGACATCACACGACAGCTACGCGTCTGCCCCTCCGATGCCATCGCCGCCC
GGATCTGTCGGCCCAACCACGCGAACTCCACCTCCCATCGGCGCCCCCCT
CGGAATCTGATTGGAACTTCTCCTCCGGGCAATCCCGA
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