prot_P-canaliculata_contig102.303.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig102.303.1
Unique Nameprot_P-canaliculata_contig102.303.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length104
Homology
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BLAST of mRNA_P-canaliculata_contig102.303.1 vs. uniprot
Match: UPI0004E9D82F (Pre-rRNA-processing protein ESF2 n=1 Tax=Passalora fulva TaxID=5499 RepID=UPI0004E9D82F)

HSP 1 Score: 51.2 bits (121), Expect = 2.960e-5
Identity = 36/75 (48.00%), Postives = 45/75 (60.00%), Query Frame = 0 
Query:   20 MSARKRNEYLEGYESEDDNANGYDSEAVEDSRT--GHGSKRRRVEADSSDEETLHDGGGVVVVKESRHLGTTDKN 92
            MS RKRNE+LEG E+E++  NGYDSEA E      G G+KRR+V+A S D +     G V  VKE    G   K+
Sbjct:    1 MSTRKRNEFLEGDETEEEIENGYDSEAEEGRGALGGRGNKRRKVDATSDDSD-----GDVENVKEPPKAGAIVKD 70
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig102.303.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI0004E9D82F2.960e-548.00Pre-rRNA-processing protein ESF2 n=1 Tax=Passalora... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig102contigP-canaliculata_contig102:36335..36646 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig102.303.1mRNA_P-canaliculata_contig102.303.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig102 36335..36646 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig102.303.1 ID=prot_P-canaliculata_contig102.303.1|Name=mRNA_P-canaliculata_contig102.303.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=104bp
AQTSDLGPVVQHFHHISNTMSARKRNEYLEGYESEDDNANGYDSEAVEDS
RTGHGSKRRRVEADSSDEETLHDGGGVVVVKESRHLGTTDKNPQESQPAE
QMGA
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