mRNA_P-canaliculata_contig102.297.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig102.297.1
Unique NamemRNA_P-canaliculata_contig102.297.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig102.297.1 vs. uniprot
Match: A0A4U0UMR6_9PEZI (Uncharacterized protein n=1 Tax=Friedmanniomyces endolithicus TaxID=329885 RepID=A0A4U0UMR6_9PEZI)

HSP 1 Score: 134 bits (338), Expect = 1.140e-37
Identity = 67/101 (66.34%), Postives = 81/101 (80.20%), Query Frame = 1 
Query:   34 MVRIKHRYLLINILYPDNKDPVALRSADETLENCYTIQFRRPSDDRVDARLLLRVVRDCVADLFGDYGSGKVASSLQVKYCSSATSTAIIRVAREHYRMVW 336
            MVRIKHRYLL+NILYPD K      +A    +  YT+QFRRPS D+++  LL+R++RD V +LFGDYGSGK+A SLQVKY SSATSTAIIRV+REHYR+VW
Sbjct:    1 MVRIKHRYLLVNILYPDAKYSPLRPAATAGDDVPYTVQFRRPSPDQMNGGLLMRLIRDGVVELFGDYGSGKIAGSLQVKYFSSATSTAIIRVSREHYRLVW 101
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BLAST of mRNA_P-canaliculata_contig102.297.1 vs. uniprot
Match: A0A6A6CC76_9PEZI (Uncharacterized protein n=1 Tax=Zasmidium cellare ATCC 36951 TaxID=1080233 RepID=A0A6A6CC76_9PEZI)

HSP 1 Score: 133 bits (335), Expect = 2.180e-37
Identity = 66/101 (65.35%), Postives = 81/101 (80.20%), Query Frame = 1 
Query:   34 MVRIKHRYLLINILYPDNKDPVALRSADETLENCYTIQFRRPSDDRVDARLLLRVVRDCVADLFGDYGSGKVASSLQVKYCSSATSTAIIRVAREHYRMVW 336
            MVRIKHRYLL++ILYP     +A  S+ +  EN +T+QFRRPS DR+D +LL R++RD V++LFGDYG+G VA SLQVKY S ATSTAI+RVAR HYRMVW
Sbjct:    1 MVRIKHRYLLLDILYPSEDKSIA--SSKKNGENPWTVQFRRPSSDRLDGKLLARLIRDGVSELFGDYGAGMVAGSLQVKYISPATSTAIVRVARAHYRMVW 99
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BLAST of mRNA_P-canaliculata_contig102.297.1 vs. uniprot
Match: A0A4V5NF63_9PEZI (Uncharacterized protein n=2 Tax=Friedmanniomyces simplex TaxID=329884 RepID=A0A4V5NF63_9PEZI)

HSP 1 Score: 133 bits (334), Expect = 4.590e-37
Identity = 68/102 (66.67%), Postives = 82/102 (80.39%), Query Frame = 1 
Query:   34 MVRIKHRYLLINILYPDNKDPVALRSADETLENC-YTIQFRRPSDDRVDARLLLRVVRDCVADLFGDYGSGKVASSLQVKYCSSATSTAIIRVAREHYRMVW 336
            MVRIKHRYLL+NILYPD K    LR A +  ++  YT+QFRRPS D+V+  LL+R++RD V +LFGDYGSGK+A SLQVKY S ATSTA IRV+REHYR+VW
Sbjct:    1 MVRIKHRYLLVNILYPDTKSS-HLRPASKPGDDVPYTVQFRRPSPDQVNGGLLMRLIRDGVVELFGDYGSGKIAGSLQVKYFSPATSTATIRVSREHYRLVW 101
[Close]
BLAST of mRNA_P-canaliculata_contig102.297.1 vs. uniprot
Match: A0A6A6Q801_9PEZI (Rpp14/Pop5 family-domain-containing protein n=1 Tax=Neohortaea acidophila TaxID=245834 RepID=A0A6A6Q801_9PEZI)

HSP 1 Score: 132 bits (332), Expect = 8.000e-37
Identity = 67/104 (64.42%), Postives = 83/104 (79.81%), Query Frame = 1 
Query:   34 MVRIKHRYLLINILYPDNKDPVA---LRSADETLENCYTIQFRRPSDDRVDARLLLRVVRDCVADLFGDYGSGKVASSLQVKYCSSATSTAIIRVAREHYRMVW 336
            MVRIKHRYLL+NILYPD+ +       R AD+     YT+QFRRP+ DR+D++LL R+VRD V++LFGDYGSG +A SLQ+KY S ATSTAIIRV+R+HYRMVW
Sbjct:    1 MVRIKHRYLLVNILYPDSNNVANGSWKRPADDVP---YTVQFRRPTPDRMDSKLLARLVRDGVSELFGDYGSGMIAGSLQIKYFSPATSTAIIRVSRDHYRMVW 101
[Close]
BLAST of mRNA_P-canaliculata_contig102.297.1 vs. uniprot
Match: A0A3M7E2H6_HORWE (Ribonuclease P/MRP protein subunit POP5 n=15 Tax=Hortaea werneckii TaxID=91943 RepID=A0A3M7E2H6_HORWE)

HSP 1 Score: 130 bits (328), Expect = 3.050e-36
Identity = 64/103 (62.14%), Postives = 85/103 (82.52%), Query Frame = 1 
Query:   34 MVRIKHRYLLINILYPDNKDPVALRSADETLENC--YTIQFRRPSDDRVDARLLLRVVRDCVADLFGDYGSGKVASSLQVKYCSSATSTAIIRVAREHYRMVW 336
            MVR+KHRYLL+NILYPD K  + +R A ET +    Y++QFR+PS  +++ ++LLR++RD VA+LFGDYGSGKVA +LQ+KY S ATSTAIIRV+R+HYR+VW
Sbjct:    1 MVRLKHRYLLVNILYPDPKT-INVRIATETADQNAPYSLQFRQPSSQQLNIKILLRIIRDGVAELFGDYGSGKVAGTLQIKYFSPATSTAIIRVSRDHYRLVW 102
[Close]
BLAST of mRNA_P-canaliculata_contig102.297.1 vs. uniprot
Match: UPI001D8759E7 (Ribonuclease P/MRP protein subunit POP5 n=1 Tax=Passalora fulva TaxID=5499 RepID=UPI001D8759E7)

HSP 1 Score: 128 bits (322), Expect = 2.750e-35
Identity = 65/101 (64.36%), Postives = 79/101 (78.22%), Query Frame = 1 
Query:   34 MVRIKHRYLLINILYPDNKDPVALRSADETLENCYTIQFRRPSDDRVDARLLLRVVRDCVADLFGDYGSGKVASSLQVKYCSSATSTAIIRVAREHYRMVW 336
            MVRIKHRYLL+NILYP         + ++++   YT+QFRRPS D +DA+LL R++RD VA+LFGDYG+G  A SLQVKY SSATSTAI+RVAR HYRMVW
Sbjct:    1 MVRIKHRYLLLNILYPSLDKANTPATQNDSIP--YTVQFRRPSSDYLDAKLLGRMIRDGVAELFGDYGAGTTAGSLQVKYVSSATSTAIVRVARAHYRMVW 99
[Close]
BLAST of mRNA_P-canaliculata_contig102.297.1 vs. uniprot
Match: F9XJR2_ZYMTI (Uncharacterized protein n=5 Tax=Zymoseptoria TaxID=1047167 RepID=F9XJR2_ZYMTI)

HSP 1 Score: 127 bits (319), Expect = 7.400e-35
Identity = 62/101 (61.39%), Postives = 76/101 (75.25%), Query Frame = 1 
Query:   34 MVRIKHRYLLINILYPDNKDPVALRSADETLENCYTIQFRRPSDDRVDARLLLRVVRDCVADLFGDYGSGKVASSLQVKYCSSATSTAIIRVAREHYRMVW 336
            MVR+KHRYLL+NILY +   P          +  +T+QFRRP  D++D +LL RVVRD VA+LFGDYG+G VA SLQVKY SSAT+TAIIRV+R HYR+VW
Sbjct:    1 MVRLKHRYLLVNILYTEPAKPARPAKTAAEAQLPWTVQFRRPGQDKMDGKLLARVVRDGVAELFGDYGAGMVAGSLQVKYMSSATNTAIIRVSRAHYRLVW 101
[Close]
BLAST of mRNA_P-canaliculata_contig102.297.1 vs. uniprot
Match: UPI000CE17622 (ribonuclease P/MRP protein subunit POP5-like n=1 Tax=Quercus suber TaxID=58331 RepID=UPI000CE17622)

HSP 1 Score: 127 bits (319), Expect = 9.740e-35
Identity = 65/102 (63.73%), Postives = 81/102 (79.41%), Query Frame = 1 
Query:   34 MVRIKHRYLLINILYPDNK-DPVALRSADETLENCYTIQFRRPSDDRVDARLLLRVVRDCVADLFGDYGSGKVASSLQVKYCSSATSTAIIRVAREHYRMVW 336
            MVRIKHRYLL+NILYPD K  PV   SA +  E  Y++QFR+PS D+++ + L RV++D VA LFGDYGSGK+ASSL +KY S ATST IIRV+R+HYR+VW
Sbjct:    1 MVRIKHRYLLVNILYPDEKKSPVNSASAAKD-EIPYSVQFRQPSSDQLNPKFLARVIKDGVASLFGDYGSGKIASSLLIKYFSPATSTMIIRVSRDHYRLVW 101
[Close]
BLAST of mRNA_P-canaliculata_contig102.297.1 vs. uniprot
Match: UPI000CE1D794 (ribonuclease P/MRP protein subunit POP5-like n=1 Tax=Quercus suber TaxID=58331 RepID=UPI000CE1D794)

HSP 1 Score: 127 bits (318), Expect = 1.240e-34
Identity = 65/104 (62.50%), Postives = 83/104 (79.81%), Query Frame = 1 
Query:   34 MVRIKHRYLLINILYPDNK-DPVA--LRSADETLENCYTIQFRRPSDDRVDARLLLRVVRDCVADLFGDYGSGKVASSLQVKYCSSATSTAIIRVAREHYRMVW 336
            MVRIKHRYLL+NILYPD K  PV   L + D+     Y++QFR+PS D+V+ +L+ +V++D VADLFGDYGSGK+ASSL +KY S ATST IIRV+R+HYR+VW
Sbjct:    1 MVRIKHRYLLVNILYPDGKASPVTSVLATKDDVP---YSVQFRQPSSDQVNPKLISKVIKDGVADLFGDYGSGKIASSLFIKYFSPATSTMIIRVSRDHYRLVW 101
[Close]
BLAST of mRNA_P-canaliculata_contig102.297.1 vs. uniprot
Match: A0A6A6F854_9PEZI (Uncharacterized protein (Fragment) n=1 Tax=Cercospora zeae-maydis SCOH1-5 TaxID=717836 RepID=A0A6A6F854_9PEZI)

HSP 1 Score: 125 bits (314), Expect = 1.240e-34
Identity = 61/102 (59.80%), Postives = 84/102 (82.35%), Query Frame = 1 
Query:   34 MVRIKHRYLLINILYPDNKDPVALRSADETLENC-YTIQFRRPSDDRVDARLLLRVVRDCVADLFGDYGSGKVASSLQVKYCSSATSTAIIRVAREHYRMVW 336
            MVRIKHRYLL+NILYP N++    RSA ++ ++  + +QFRRPS D+ +   L +++++ V++LFGDYG+GK+A SLQ+KYCSSATSTAI+RVAREHYR+VW
Sbjct:    1 MVRIKHRYLLLNILYP-NEEKRNPRSASKSEDDLPWAVQFRRPSSDQFNGGTLHKMIKNGVSELFGDYGAGKIAGSLQIKYCSSATSTAIVRVAREHYRLVW 101
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig102.297.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4U0UMR6_9PEZI1.140e-3766.34Uncharacterized protein n=1 Tax=Friedmanniomyces e... [more]
A0A6A6CC76_9PEZI2.180e-3765.35Uncharacterized protein n=1 Tax=Zasmidium cellare ... [more]
A0A4V5NF63_9PEZI4.590e-3766.67Uncharacterized protein n=2 Tax=Friedmanniomyces s... [more]
A0A6A6Q801_9PEZI8.000e-3764.42Rpp14/Pop5 family-domain-containing protein n=1 Ta... [more]
A0A3M7E2H6_HORWE3.050e-3662.14Ribonuclease P/MRP protein subunit POP5 n=15 Tax=H... [more]
UPI001D8759E72.750e-3564.36Ribonuclease P/MRP protein subunit POP5 n=1 Tax=Pa... [more]
F9XJR2_ZYMTI7.400e-3561.39Uncharacterized protein n=5 Tax=Zymoseptoria TaxID... [more]
UPI000CE176229.740e-3563.73ribonuclease P/MRP protein subunit POP5-like n=1 T... [more]
UPI000CE1D7941.240e-3462.50ribonuclease P/MRP protein subunit POP5-like n=1 T... [more]
A0A6A6F854_9PEZI1.240e-3459.80Uncharacterized protein (Fragment) n=1 Tax=Cercosp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig102contigP-canaliculata_contig102:17197..17588 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score128.3
Seed ortholog evalue2.3e-27
Seed eggNOG ortholog1047171.Mycgr3P47581
Preferred namePOP5
KEGG koko:K03537
KEGG Pathwayko03008,ko03013,map03008,map03013
GOsGO:0000172,GO:0000294,GO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000478,GO:0000479,GO:0000956,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005655,GO:0005730,GO:0005732,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006401,GO:0006402,GO:0006464,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009249,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0016070,GO:0016071,GO:0016072,GO:0016074,GO:0018065,GO:0018193,GO:0018205,GO:0019222,GO:0019439,GO:0019538,GO:0022613,GO:0030490,GO:0030677,GO:0030681,GO:0031070,GO:0031974,GO:0031981,GO:0032991,GO:0033967,GO:0034470,GO:0034641,GO:0034655,GO:0034660,GO:0034963,GO:0034965,GO:0036211,GO:0042254,GO:0042274,GO:0043144,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0051604,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901575,GO:1902494,GO:1902555,GO:1905267,GO:1905348,GO:1990904
EggNOG free text desc.Rpp14/Pop5 family
EggNOG OGs20274@147541,3A8A9@33154,3MMHT@451867,3P7BH@4751,3QVRD@4890,COG1369@1,KOG4639@2759
Ec32 ortholog descriptionRibonuclease P/MRP protein subunit
Ec32 orthologEc-15_001380.1
EC3.1.26.5
COG Functional cat.J
Best tax levelDothideomycetidae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009,ko03016,ko03029
Hectar predicted targeting categoryother localisation
Exons2
Model size339
Cds size336
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815592.377663-CDS-P-canaliculata_contig102:17197..172681622815592.377663-CDS-P-canaliculata_contig102:17197..17268Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102 17198..17268 -
1693494155.0425808-CDS-P-canaliculata_contig102:17197..172681693494155.0425808-CDS-P-canaliculata_contig102:17197..17268Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102 17198..17268 -
1622815592.3924785-CDS-P-canaliculata_contig102:17323..175881622815592.3924785-CDS-P-canaliculata_contig102:17323..17588Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102 17324..17588 -
1693494155.0585332-CDS-P-canaliculata_contig102:17323..175881693494155.0585332-CDS-P-canaliculata_contig102:17323..17588Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102 17324..17588 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig102.297.1prot_P-canaliculata_contig102.297.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig102 17198..17588 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig102.297.1

>prot_P-canaliculata_contig102.297.1 ID=prot_P-canaliculata_contig102.297.1|Name=mRNA_P-canaliculata_contig102.297.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=112bp
QSDNAHSFPLTMVRIKHRYLLINILYPDNKDPVALRSADETLENCYTIQF
RRPSDDRVDARLLLRVVRDCVADLFGDYGSGKVASSLQVKYCSSATSTAI
IRVAREHYRMVW
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mRNA from alignment at P-canaliculata_contig102:17197..17588-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig102.297.1 ID=mRNA_P-canaliculata_contig102.297.1|Name=mRNA_P-canaliculata_contig102.297.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=392bp|location=Sequence derived from alignment at P-canaliculata_contig102:17197..17588- (Pelvetia canaliculata dioecious)
CAGAGTGACAATGCTCACTCATTTCCTTTGACGATGGTCAGAATCAAGCA
TCGCTACCTGCTGATCAACATCCTGTACCCAGACAACAAAGACCCGGTTG
CACTCCGAAGCGCCGACGAGACGCTTGAGAATTGCTATACGATTCAATTT
CGTCGTCCGAGCGACGACAGGGTAGATGCGAGGCTACTGTTGCGCGTCGT
GCGGGACTGTGTTGCGGACTTGTTTGGCGACTATGGATCAGGAAAAGTTG
CATCGAGCTTACAAGGTACGGTCGAACAGCCCGCCATTGTTCGCAGCAAA
CCCTGATGACCATGAGACAGTCAAATATTGTTCTTCTGCGACGAGCACGG
CCATCATCAGGGTCGCCAGGGAACATTACCGCATGGTCTGGG
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Coding sequence (CDS) from alignment at P-canaliculata_contig102:17197..17588-

>mRNA_P-canaliculata_contig102.297.1 ID=mRNA_P-canaliculata_contig102.297.1|Name=mRNA_P-canaliculata_contig102.297.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=672bp|location=Sequence derived from alignment at P-canaliculata_contig102:17197..17588- (Pelvetia canaliculata dioecious)
CAGAGTGACAATGCTCACTCATTTCCTTTGACGATGGTCAGAATCAAGCA
TCGCTACCTGCTGATCAACATCCTGTACCCAGACAACAAAGACCCGGTTG
CACTCCGAAGCGCCGACGAGACGCTTGAGAATTGCTATACGATTCAATTT
CGTCGTCCGAGCGACGACAGGGTAGATGCGAGGCTACTGTTGCGCGTCGT
GCGGGACTGTGTTGCGGACTTGTTTGGCGACTATGGATCAGGAAAAGTTG
CATCGAGCTTACAAGCAGAGTGACAATGCTCACTCATTTCCTTTGACGAT
GGTCAGAATCAAGCATCGCTACCTGCTGATCAACATCCTGTACCCAGACA
ACAAAGACCCGGTTGCACTCCGAAGCGCCGACGAGACGCTTGAGAATTGC
TATACGATTCAATTTCGTCGTCCGAGCGACGACAGGGTAGATGCGAGGCT
ACTGTTGCGCGTCGTGCGGGACTGTGTTGCGGACTTGTTTGGCGACTATG
GATCAGGAAAAGTTGCATCGAGCTTACAAGTCAAATATTGTTCTTCTGCG
ACGAGCACGGCCATCATCAGGGTCGCCAGGGAACATTACCGCATGGTCTG
GTCAAATATTGTTCTTCTGCGACGAGCACGGCCATCATCAGGGTCGCCAG
GGAACATTACCGCATGGTCTGG
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