mRNA_P-canaliculata_contig101977.291.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig101977.291.1
Unique NamemRNA_P-canaliculata_contig101977.291.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig101977.291.1 vs. uniprot
Match: A0A2E2B8T6_9BACT (Uncharacterized protein n=1 Tax=Phycisphaeraceae bacterium TaxID=2026777 RepID=A0A2E2B8T6_9BACT)

HSP 1 Score: 76.6 bits (187), Expect = 4.890e-13
Identity = 65/195 (33.33%), Postives = 88/195 (45.13%), Query Frame = 1
Query:    1 GGEQDDTWLASTYPHRENGD-PSNEWVWGRITSLTGGSFHVEDFDARLPIEDTFAVGYPNVDDTGDDRFDFNIPLFGLQADQERNPDVSPPAA------------------PLLVDADGDGVPDSRFERAPLAVLGGIEYFMAVRVVDLASMLNLNTAGSSADSGGNQDP-TDPPRARHPGDLDAGQFFGLNQPS 525
            GG  DDTWLAS+ P  ++ D  +   VW  IT+L G          RLP     A G P+  D         +P   L A  +   D + P                     + VDADGDG+ DS++  AP+  + G+ Y MAVR+VD +S LN+NTA S        D  T+ P   +P +LD G F+    PS
Sbjct:  119 GGVLDDTWLASSEPVFDHSDYTAGTPVWQHITNLNG-------IFLRLPQT---AAGKPSRPD--------ELPANNLVAASQWRRDTAVPIEGGATKNYLDAGGADSDYQDIGVDADGDGILDSKWTWAPIRQISGVSYVMAVRIVDNSSKLNINTALSQVGGSNAYDSYTNAPAWTNPSELDLGNFYFSYSPS 295          
BLAST of mRNA_P-canaliculata_contig101977.291.1 vs. uniprot
Match: A0A7X0H8Z9_9BACT (Uncharacterized protein n=1 Tax=Algisphaera agarilytica TaxID=1385975 RepID=A0A7X0H8Z9_9BACT)

HSP 1 Score: 73.6 bits (179), Expect = 5.720e-12
Identity = 62/184 (33.70%), Postives = 81/184 (44.02%), Query Frame = 1
Query:    1 GGEQDDTWLASTYPHRENGDPSNEWVWGRITSLTG------GSFHVEDFDA-RLPIEDTFAVGYPNVDDTGDDRFDFNIPLFGLQADQERNPDVSPPAAPLLVDADGDGVPDSRFERAPLAVLGGIEYFMAVRVVDLASMLNLNTAGSSADSGGNQD---------PTDPPRARHPGDLDAGQF 504
            GG  D+ WLAS+ P    G P     W  IT L G      G   +    A   P E    + +  V   G      N     ++       D + P   LLVDADGDGVPDSR+  A + V+ G  Y MAVR++DL+  +NLNTA S  D+    D             PR   P ++D G+F
Sbjct:  136 GGHLDNKWLASSSPSDLGGTP----YWENITDLNGVFLSAAGHSDLTSLAAGSAPTESP--INHAGVATPGMSNVSINT---NVRHTLPAPADFADPTLSLLVDADGDGVPDSRWAWATIPVIEGKAYTMAVRIIDLSGRINLNTATSPLDNTARYDYETSTTTVASEHAPRWDTPAEIDLGRF 310          
BLAST of mRNA_P-canaliculata_contig101977.291.1 vs. uniprot
Match: A0A2D5Z010_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2D5Z010_9PLAN)

HSP 1 Score: 62.4 bits (150), Expect = 4.120e-8
Identity = 60/186 (32.26%), Postives = 83/186 (44.62%), Query Frame = 1
Query:    1 GGEQDDTWLASTYPHRENGDPSNEWVWGRITSLTGGSFHVEDFDARLP-------IEDTFAVGYPNVDDTGDDRFDFNI-PLFGLQADQERNPDVSPPAAPLLVDADGDGVPDSRFERAPLAVLGGIEYFMAVRVVDLASMLNLNTAGSSADSGGNQDPT-DPPRARHPGDLDAGQF---FGLNQP 522
            GG  DD WLAS+ P     D      W  IT+LTG    + D     P       +++  A G     DT     D  I P  G         +  P    + VDAD DG+ DSR+  A L  +G ++Y  AV + D ++M+NLNT  + + +GG  D + + PR   P  LD  +F     LN P
Sbjct:  148 GGRHDDMWLASSAPI----DDLGVMTWPHITNLTGIFLRLPDIGTSKPNNPEEHFVDNPMAGGAFLGVDT-----DLKIIPAGGRSLSSGDTSNWQP----IGVDADRDGIRDSRWTWAALPRVGNVQYVAAVIIRDNSAMVNLNTVRALSTTGGVYDASVEAPRWVDPTSLDGARFVEELDLNPP 320          
BLAST of mRNA_P-canaliculata_contig101977.291.1 vs. uniprot
Match: A0A7T5CIL2_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7T5CIL2_9BACT)

HSP 1 Score: 61.6 bits (148), Expect = 7.720e-8
Identity = 48/156 (30.77%), Postives = 75/156 (48.08%), Query Frame = 1
Query:   16 DTWLASTYPHRENGDPSNEW---------VWGRITSLTGGSFHVEDFDARLPIEDTFAVGYPNVDDTGDDRFDFNIPLFGLQADQERNPDVSPPAAPLL-----------VDADGDGVPDSRFERAPLAV--LGGIEYFMAVRVVDLASMLNLNTA 417
            D +LAST P  E G   N W         +W  +T+++G    +  ++    +   +     ++ D  D  +D      G    +  + DV+ P   LL           VD D DG+PD+R++ AP  V  +GG +Y MA+RVVDL S++N+NTA
Sbjct:  149 DHYLASTIP--EIGFGGNSWLARIDSQDHIWPHLTNISGAWLDLPVYNPDPTLAIRYKRPSEHLIDADDTEYD------GYNVTELNSRDVNIPFDFLLQSAGTAWQRRGVDTDSDGIPDARWQWAPEGVRDIGGRKYVMALRVVDLNSLININTA 296          
BLAST of mRNA_P-canaliculata_contig101977.291.1 vs. uniprot
Match: A0A517YUL0_9BACT (Uncharacterized protein n=2 Tax=Poriferisphaera corsica TaxID=2528020 RepID=A0A517YUL0_9BACT)

HSP 1 Score: 60.5 bits (145), Expect = 1.930e-7
Identity = 49/152 (32.24%), Postives = 75/152 (49.34%), Query Frame = 1
Query:   16 DTWLASTYPH--------RENGDPSNEWVWGRITSLTGGSFHVEDFDA--------RLPIEDTF-AVGYPNVDDTGDDRFDFNIPLFGLQADQERNPDVSPPAAPLLVDADGDGVPDSRFERAPLAV--LGGIEYFMAVRVVDLASMLNLNT 414
            D +LAST P          +N D S++ +W  +T++TG    +  ++         R P E    +  Y     T  D  D N+ +  L     R+ D  P  A    D DGDG+PD+R++  P  V  +GG +Y MA+R+VDL S++N+NT
Sbjct:  153 DHYLASTMPEIGFYGSSELDNID-SSDHIWPHLTNITGIWLDLPVYNPDPSLAVEYRRPFETAIDSDNYSGSPSTSRDNRDTNVDMEYLL--DSRSADFMPRGA----DTDGDGIPDARWQWVPEGVRDIGGRKYVMALRIVDLNSLVNVNT 297          
BLAST of mRNA_P-canaliculata_contig101977.291.1 vs. uniprot
Match: A0A7G9P112_9BACT (Uncharacterized protein n=1 Tax=Planctomycetales bacterium zrk34 TaxID=2723666 RepID=A0A7G9P112_9BACT)

HSP 1 Score: 57.8 bits (138), Expect = 1.570e-6
Identity = 39/92 (42.39%), Postives = 53/92 (57.61%), Query Frame = 1
Query:  289 DADGDGVPDSRFERAPLAVLGGIEYFMAVRVVDLASMLNLNTAGSSADSGG-----NQDP--TDPPRARHPGDLDAG----QFFGLNQPSTP 531
            DADGDG+ DS ++ AP+ +  GI Y +AVR +DL+SM+NLN A S  D+       N D   T+  R  +P D+DAG    +F  L  P  P
Sbjct:  148 DADGDGLFDSIWQPAPIPIFNGISYRVAVRTIDLSSMVNLNVATSQVDASTGAYDTNSDAAATEASRWLNPCDIDAGGMMFRFRTLTSPPLP 239          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig101977.291.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A2E2B8T6_9BACT4.890e-1333.33Uncharacterized protein n=1 Tax=Phycisphaeraceae b... [more]
A0A7X0H8Z9_9BACT5.720e-1233.70Uncharacterized protein n=1 Tax=Algisphaera agaril... [more]
A0A2D5Z010_9PLAN4.120e-832.26Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
A0A7T5CIL2_9BACT7.720e-830.77Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A517YUL0_9BACT1.930e-732.24Uncharacterized protein n=2 Tax=Poriferisphaera co... [more]
A0A7G9P112_9BACT1.570e-642.39Uncharacterized protein n=1 Tax=Planctomycetales b... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig101977contigP-canaliculata_contig101977:389..991 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size537
Cds size537
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815591.9349952-CDS-P-canaliculata_contig101977:388..7211622815591.9349952-CDS-P-canaliculata_contig101977:388..721Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101977 389..721 -
1693494154.7742243-CDS-P-canaliculata_contig101977:388..7211693494154.7742243-CDS-P-canaliculata_contig101977:388..721Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101977 389..721 -
1622815591.9452941-CDS-P-canaliculata_contig101977:787..9911622815591.9452941-CDS-P-canaliculata_contig101977:787..991Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101977 788..991 -
1693494154.784089-CDS-P-canaliculata_contig101977:787..9911693494154.784089-CDS-P-canaliculata_contig101977:787..991Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101977 788..991 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig101977.291.1prot_P-canaliculata_contig101977.291.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig101977 389..991 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig101977.291.1

>prot_P-canaliculata_contig101977.291.1 ID=prot_P-canaliculata_contig101977.291.1|Name=mRNA_P-canaliculata_contig101977.291.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=179bp
GGEQDDTWLASTYPHRENGDPSNEWVWGRITSLTGGSFHVEDFDARLPIE
DTFAVGYPNVDDTGDDRFDFNIPLFGLQADQERNPDVSPPAAPLLVDADG
DGVPDSRFERAPLAVLGGIEYFMAVRVVDLASMLNLNTAGSSADSGGNQD
PTDPPRARHPGDLDAGQFFGLNQPSTPDV
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mRNA from alignment at P-canaliculata_contig101977:389..991-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig101977.291.1 ID=mRNA_P-canaliculata_contig101977.291.1|Name=mRNA_P-canaliculata_contig101977.291.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=603bp|location=Sequence derived from alignment at P-canaliculata_contig101977:389..991- (Pelvetia canaliculata dioecious)
GGCGGGGAGCAGGACGACACCTGGTTGGCATCGACCTACCCGCACCGCGA GAATGGCGATCCGTCGAACGAGTGGGTCTGGGGCCGGATCACCTCGCTCA CCGGGGGCTCGTTTCATGTCGAAGACTTCGATGCACGCCTGCCGATCGAA GACACATTCGCGGTTGGTTACCCCAACGTGGATGACACCGGCGACGACCG CTTCGTGCGGGAGGAAGCCAGCGGCGAGAATGTGGCCGATTACTACGAGG ACTCGTTGATCCGTGGGCAGGACTTCAACATCCCGCTCTTCGGGCTGCAG GCCGATCAGGAGCGGAACCCGGATGTTTCGCCCCCGGCGGCCCCGCTGCT CGTGGACGCCGACGGCGACGGGGTGCCGGATTCCCGCTTCGAGCGTGCAC CGCTCGCGGTTCTGGGCGGCATCGAGTACTTCATGGCCGTCCGCGTGGTG GACCTGGCCTCGATGCTGAACCTCAACACCGCCGGATCATCGGCGGACAG CGGAGGCAACCAGGACCCCACCGACCCGCCGCGTGCGCGTCACCCCGGCG ACCTGGACGCGGGCCAGTTCTTCGGCCTCAACCAGCCGAGCACGCCCGAT GTG
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Coding sequence (CDS) from alignment at P-canaliculata_contig101977:389..991-

>mRNA_P-canaliculata_contig101977.291.1 ID=mRNA_P-canaliculata_contig101977.291.1|Name=mRNA_P-canaliculata_contig101977.291.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1074bp|location=Sequence derived from alignment at P-canaliculata_contig101977:389..991- (Pelvetia canaliculata dioecious)
GGCGGGGAGCAGGACGACACCTGGTTGGCATCGACCTACCCGCACCGCGA
GAATGGCGATCCGTCGAACGAGTGGGTCTGGGGCCGGATCACCTCGCTCA
CCGGGGGCTCGTTTCATGTCGAAGACTTCGATGCACGCCTGCCGATCGAA
GACACATTCGCGGTTGGTTACCCCAACGTGGATGACACCGGCGACGACCG
CTTCGGCGGGGAGCAGGACGACACCTGGTTGGCATCGACCTACCCGCACC
GCGAGAATGGCGATCCGTCGAACGAGTGGGTCTGGGGCCGGATCACCTCG
CTCACCGGGGGCTCGTTTCATGTCGAAGACTTCGATGCACGCCTGCCGAT
CGAAGACACATTCGCGGTTGGTTACCCCAACGTGGATGACACCGGCGACG
ACCGCTTCGACTTCAACATCCCGCTCTTCGGGCTGCAGGCCGATCAGGAG
CGGAACCCGGATGTTTCGCCCCCGGCGGCCCCGCTGCTCGTGGACGCCGA
CGGCGACGGGGTGCCGGATTCCCGCTTCGAGCGTGCACCGCTCGCGGTTC
TGGGCGGCATCGAGTACTTCATGGCCGTCCGCGTGGTGGACCTGGCCTCG
ATGCTGAACCTCAACACCGCCGGATCATCGGCGGACAGCGGAGGCAACCA
GGACCCCACCGACCCGCCGCGTGCGCGTCACCCCGGCGACCTGGACGCGG
GCCAGTTCTTCGGCCTCAACCAGCCGAGCACGCCCGATGTGGACTTCAAC
ATCCCGCTCTTCGGGCTGCAGGCCGATCAGGAGCGGAACCCGGATGTTTC
GCCCCCGGCGGCCCCGCTGCTCGTGGACGCCGACGGCGACGGGGTGCCGG
ATTCCCGCTTCGAGCGTGCACCGCTCGCGGTTCTGGGCGGCATCGAGTAC
TTCATGGCCGTCCGCGTGGTGGACCTGGCCTCGATGCTGAACCTCAACAC
CGCCGGATCATCGGCGGACAGCGGAGGCAACCAGGACCCCACCGACCCGC
CGCGTGCGCGTCACCCCGGCGACCTGGACGCGGGCCAGTTCTTCGGCCTC
AACCAGCCGAGCACGCCCGATGTG
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