mRNA_P-canaliculata_contig10195.285.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig10195.285.1
Unique NamemRNA_P-canaliculata_contig10195.285.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
[Close]
BLAST of mRNA_P-canaliculata_contig10195.285.1 vs. uniprot
Match: A0A6H5L1H4_9PHAE (Thioredoxin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L1H4_9PHAE)

HSP 1 Score: 229 bits (585), Expect = 1.100e-65
Identity = 107/179 (59.78%), Postives = 139/179 (77.65%), Query Frame = 2 
Query:  389 SDVVQITTENYTETIKQGTWFVKFYTDWCSHCKQLQPTWEELAKDLKGKVRVGQVNCETDRALCSRFHVKGYPTLVHVHNRKCRVYKLKSRAKSALIYFAEKGYTKSAAISALKSPFGPIESVKARLVEAIILSRKFVLEQVASGTPIWLLCIYAVSGLVVMTTAISLILVATKRPKQD 925
            SD++ +T+EN+ ETIK+GTWFVKFYTDWC HC++LQPTWEELA +LKGKV VGQVNC+ D +LC RFHV GYPTLVHVHNR+ RVYK KSR K AL+ FA  GY K  A+SALKSPFGP+E+ KA +    + ++KFV+  +  GTP+W++C+ AV+ L      ++ +LV+ KRPK+D
Sbjct:   75 SDIITVTSENFKETIKEGTWFVKFYTDWCPHCQRLQPTWEELATELKGKVNVGQVNCDRDYSLCRRFHVTGYPTLVHVHNRRSRVYK-KSRGKEALVAFALNGYKKQVAVSALKSPFGPLENFKALIAREALRAKKFVVSTIEKGTPMWMVCLCAVAVLXXXXXVVASVLVSIKRPKED 252
[Close]
BLAST of mRNA_P-canaliculata_contig10195.285.1 vs. uniprot
Match: A0A5J4XL76_9CHLO (Disulfide isomerase n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XL76_9CHLO)

HSP 1 Score: 100 bits (250), Expect = 6.490e-21
Identity = 50/130 (38.46%), Postives = 76/130 (58.46%), Query Frame = 2 
Query:  380 TADSDVVQITTENYTETIKQGTWFVKFYTDWCSHCKQLQPTWEELAKDLKGKVRVGQVNCETDRALCSRFHVKGYPTLVHVHNRKCRVYKLKSRAKSALIYFAEKGYTKSAAISALKSPFGPIESVKARL 769
            T   +V  +T  N+ ++  +G W ++F+  WCSHC+ L+ TW+ LA +LKGKV V +V+  ++R L  RFHV+G+PT+ HVH+ + R Y  K R    L+ FA   +    A+   KSP   I  V  R+
Sbjct:   25 TESQNVRSLTDANFDQSTAEGAWLIEFFAPWCSHCRDLEATWDALADELKGKVNVAKVDGTSERGLLGRFHVEGFPTIFHVHDTETRPYTGK-RTMQKLMDFALADWKAEPALPVWKSPTSLIGRVWGRI 153
[Close]
BLAST of mRNA_P-canaliculata_contig10195.285.1 vs. uniprot
Match: A0A397TX59_9GLOM (Thioredoxin-like protein n=2 Tax=Gigaspora TaxID=4873 RepID=A0A397TX59_9GLOM)

HSP 1 Score: 102 bits (255), Expect = 4.270e-19
Identity = 39/73 (53.42%), Postives = 56/73 (76.71%), Query Frame = 2 
Query:  395 VVQITTENYTETIKQGTWFVKFYTDWCSHCKQLQPTWEELAKDLKGKVRVGQVNCETDRALCSRFHVKGYPTL 613
            V+ + +EN+ E  K G WFVKF+  WC HCK L PTWEEL++ L+ KV VG+V+C T++ +CS+F+++GYPTL
Sbjct:  161 VISLNSENFDELTKYGPWFVKFFAPWCGHCKNLAPTWEELSRKLQNKVNVGEVDCTTEKDICSKFNIQGYPTL 233
[Close]
BLAST of mRNA_P-canaliculata_contig10195.285.1 vs. uniprot
Match: A0A0G4FAB9_VITBC (Thioredoxin domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FAB9_VITBC)

HSP 1 Score: 95.5 bits (236), Expect = 1.600e-18
Identity = 63/177 (35.59%), Postives = 102/177 (57.63%), Query Frame = 2 
Query:  440 GTWFVKFYTDWCSHCKQLQPTWEELAKDLKGKVRVGQVNCETDRALCSRFHVKGYPTLVHVHNRKCRVYKLK-SRAKSALIYFAEKGYTKSAAISALKSPFGPIESVKARLVEAIILSRKFVLEQ-VASGTPIWLLCIYAVSGLVVMTTAISLILVATKRPKQD*RSRALAKVLPED 964
            G WF++FY +WC HC++LQPTWEELA +LKG+V V +V+C+ + +  SRF+++G+PTL+ +  R+ R+Y+ K +R  +AL  FA  GY K+     +  P   ++ +K   +  + +S +F  E  V  G         AV   V++ T  SL+++   R     R R   +V PE+
Sbjct:   51 GDWFIEFYANWCGHCQRLQPTWEELAANLKGRVVVAKVDCDANTSTRSRFNIQGFPTLLLL--RQGRMYEYKGARDLAALEAFATGGYKKTPG-KPVPPPESLLDQLKKEAMLLLDMSMRFAKEHPVHVGV--------AVGVSVMLGTVFSLLMMVLTR-----RKRTGGEVAPEE 211
[Close]
BLAST of mRNA_P-canaliculata_contig10195.285.1 vs. uniprot
Match: J4CD11_THEOR (Transmembrane protein 17 n=3 Tax=Theileria orientalis TaxID=68886 RepID=J4CD11_THEOR)

HSP 1 Score: 92.4 bits (228), Expect = 1.990e-17
Identity = 51/123 (41.46%), Postives = 69/123 (56.10%), Query Frame = 2 
Query:  371 DFETADSDVVQITTENYTETIKQ-------GTWFVKFYTDWCSHCKQLQPTWEELAKDLKGKVRVGQVNCETDRALCSRFHVKGYPTLVHVHNRKCRVYKLKSRAKSALIYFAEKGYTKSAAI 718
            D E  +S+ +   TE+  E + Q       GTWFVKFY  WCSHC+++ P WE LAK+LKG+V V  V+   +  L  RF +KGYPTLV  H  K   Y+   R    L  FA   ++K+ A+
Sbjct:   21 DLERENSNHLVTLTESTFEKLTQASSGSTTGTWFVKFYAPWCSHCRRMAPAWESLAKELKGQVNVADVDVTRNPKLGRRFQIKGYPTLVLFHKGKMYHYEGGERTVEKLSQFALGEFSKTDAL 143
[Close]
BLAST of mRNA_P-canaliculata_contig10195.285.1 vs. uniprot
Match: C1E147_MICCC (Thioredoxin domain-containing protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E147_MICCC)

HSP 1 Score: 92.8 bits (229), Expect = 2.000e-17
Identity = 44/114 (38.60%), Postives = 68/114 (59.65%), Query Frame = 2 
Query:  395 VVQITTENYTETIKQGTWFVKFYTDWCSHCKQLQPTWEELAKDLKGKVRVGQVNCETDRALCSRFHVKGYPTLVHVHNRKCRVYKLKSRAKSALIYFAEKGYTKSAAISALKSP 736
            VV++T  ++   + +G   V  Y DWC HC+QL P WEELAK+L+G+V V +VN    R+L  R HVK YP+++++ + + R Y    R   AL  FA KG+ ++  +    +P
Sbjct:   24 VVEVTEVDFDAQVAKGPTLVDVYADWCGHCRQLAPVWEELAKELEGEVYVVKVNGPKCRSLQQRLHVKAYPSILYLRDGEMRSYDAAQRTVQALAAFARKGWRRTKPVPFYMAP 137
[Close]
BLAST of mRNA_P-canaliculata_contig10195.285.1 vs. uniprot
Match: Q16961_ACACA (Disulfide-like protein n=2 Tax=Acanthamoeba castellanii TaxID=5755 RepID=Q16961_ACACA)

HSP 1 Score: 95.9 bits (237), Expect = 3.000e-17
Identity = 39/70 (55.71%), Postives = 48/70 (68.57%), Query Frame = 2 
Query:  404 ITTENYTETIKQGTWFVKFYTDWCSHCKQLQPTWEELAKDLKGKVRVGQVNCETDRALCSRFHVKGYPTL 613
            +T EN+T     G WFVKFY  WC HCK L PTWE+ A +LKGKV + +V+C TD  +C  F V+GYPTL
Sbjct:  167 LTAENFTLATNGGKWFVKFYAPWCGHCKNLAPTWEKAASELKGKVNIAKVDCTTDGFMCQLFGVRGYPTL 236
[Close]
BLAST of mRNA_P-canaliculata_contig10195.285.1 vs. uniprot
Match: A0A0L0DS11_THETB (Protein disulfide isomerase A n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DS11_THETB)

HSP 1 Score: 95.1 bits (235), Expect = 7.010e-17
Identity = 44/113 (38.94%), Postives = 67/113 (59.29%), Query Frame = 2 
Query:  356 DKASEDFETADSDVVQITTENYTETIKQGTWFVKFYTDWCSHCKQLQPTWEELAKDLKGKVRVGQVNCETDRALCSRFHVKGYPTLVHVHNRKCRVYKLKSRAKSALIYFAEK 694
            D+  +D    DSDVV +  +N+   +  G+W VKFY  WC HCK + P W+E A  L G   +G+V+C    ++CSR+ V+GYPTL +  +   R Y+   R+  AL+ +AE+
Sbjct:   32 DEFDDDLTEVDSDVVILGDDNFDARVMDGSWLVKFYAPWCGHCKAIAPVWKETASHLLGVTSMGKVDCTVHSSICSRYGVRGYPTLKYFKDGVPRDYR-GGRSVEALVAYAER 143
[Close]
BLAST of mRNA_P-canaliculata_contig10195.285.1 vs. uniprot
Match: A0A7S2S4S3_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S4S3_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 9.180e-17
Identity = 65/188 (34.57%), Postives = 96/188 (51.06%), Query Frame = 2 
Query:  392 DVVQITTENYTETIKQGT-WFVKFYTDWCSHCKQLQPTWEELAKDL-------KGKVRVGQVNCETDRALCSRFHVKGYPTLVHVHNRKCRVYKLKSRAKSALIYFAEKGYTKSAAISALKSPFGPIESVKARLVEAIILSRKFVLEQVASGTP-IWLLCIYAVSGLVVMTTAISLI-LVATKRPKQD 925
            +VV +   ++  +I+ G  W ++FY  WC HC +  PT+E +AK L       + KV V +V+   DRAL SRF+V+G+PT   +     R Y  K R + AL  FA K Y +   I  L SPFGP+   +A L+     +  +    V  G P I+     A  G+V   TAI +I  +   +PK+D
Sbjct:   32 EVVDLDARSFDSSIRDGNAWLIEFYAPWCGHCTRFAPTYEAVAKQLHENQSTSERKVMVAKVDGGGDRALASRFNVRGFPTFYLIDGWTVREYTGK-RTQDALFQFATKTYEEYEPIPFLNSPFGPMGQSRALLMRVGTKTIDYHASMVKRGYPSIFAAITLAAFGIVFGLTAILVIGFMTLPKPKED 218
[Close]
BLAST of mRNA_P-canaliculata_contig10195.285.1 vs. uniprot
Match: A0A4V1IW28_9FUNG (Thioredoxin domain-containing protein n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4V1IW28_9FUNG)

HSP 1 Score: 95.5 bits (236), Expect = 1.040e-16
Identity = 35/72 (48.61%), Postives = 51/72 (70.83%), Query Frame = 2 
Query:  398 VQITTENYTETIKQGTWFVKFYTDWCSHCKQLQPTWEELAKDLKGKVRVGQVNCETDRALCSRFHVKGYPTL 613
            ++++  ++   I  G WF+KFY  WC HC+ L P W++L+  LKG+V VG VNC+ ++ LCSRF V+GYPTL
Sbjct:  138 IELSISSFDAMISHGPWFIKFYAPWCGHCQHLAPVWDQLSLKLKGQVNVGSVNCDVEKGLCSRFEVRGYPTL 209
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10195.285.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L1H4_9PHAE1.100e-6559.78Thioredoxin domain-containing protein n=2 Tax=Ecto... [more]
A0A5J4XL76_9CHLO6.490e-2138.46Disulfide isomerase n=1 Tax=Trebouxia sp. A1-2 Tax... [more]
A0A397TX59_9GLOM4.270e-1953.42Thioredoxin-like protein n=2 Tax=Gigaspora TaxID=4... [more]
A0A0G4FAB9_VITBC1.600e-1835.59Thioredoxin domain-containing protein n=2 Tax=Vitr... [more]
J4CD11_THEOR1.990e-1741.46Transmembrane protein 17 n=3 Tax=Theileria orienta... [more]
C1E147_MICCC2.000e-1738.60Thioredoxin domain-containing protein n=1 Tax=Micr... [more]
Q16961_ACACA3.000e-1755.71Disulfide-like protein n=2 Tax=Acanthamoeba castel... [more]
A0A0L0DS11_THETB7.010e-1738.94Protein disulfide isomerase A n=1 Tax=Thecamonas t... [more]
A0A7S2S4S3_9STRA9.180e-1734.57Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A4V1IW28_9FUNG1.040e-1648.61Thioredoxin domain-containing protein n=1 Tax=Tham... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10195contigP-canaliculata_contig10195:5160..11383 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score228.4
Seed ortholog evalue3.6e-57
Seed eggNOG ortholog2880.D8LKF4
KEGG koko:K13984
KEGG Pathwayko04141,map04141
GOsGO:0003674,GO:0003756,GO:0003824,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005788,GO:0005789,GO:0005793,GO:0005829,GO:0006457,GO:0006464,GO:0006807,GO:0006810,GO:0006897,GO:0006909,GO:0006950,GO:0006986,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009987,GO:0010033,GO:0012505,GO:0015036,GO:0015037,GO:0016020,GO:0016192,GO:0016491,GO:0016667,GO:0016853,GO:0016860,GO:0016864,GO:0019538,GO:0023052,GO:0030968,GO:0031974,GO:0031984,GO:0032991,GO:0033554,GO:0034620,GO:0034663,GO:0034976,GO:0035966,GO:0035967,GO:0036211,GO:0036498,GO:0042175,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043277,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044421,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0055114,GO:0065007,GO:0070013,GO:0070887,GO:0071310,GO:0071704,GO:0098657,GO:0098827,GO:0140096,GO:1901564
EggNOG free text desc.cell redox homeostasis
EggNOG OGsCOG0526@1,KOG0191@2759
Ec32 ortholog descriptionThioredoxin-like fold
Ec32 orthologEc-16_002760.1
COG Functional cat.CO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110,ko04131
Hectar predicted targeting categorysignal peptide
Exons6
Model size2628
Cds size735
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10195.285.1prot_P-canaliculata_contig10195.285.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig10195 5353..9683 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815591.6139674-UTR-P-canaliculata_contig10195:5159..53521622815591.6139674-UTR-P-canaliculata_contig10195:5159..5352Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10195 5160..5352 +
1693494154.606107-UTR-P-canaliculata_contig10195:5159..53521693494154.606107-UTR-P-canaliculata_contig10195:5159..5352Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10195 5160..5352 +
1622815591.706635-UTR-P-canaliculata_contig10195:9683..113831622815591.706635-UTR-P-canaliculata_contig10195:9683..11383Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10195 9684..11383 +
1693494154.6800737-UTR-P-canaliculata_contig10195:9683..113831693494154.6800737-UTR-P-canaliculata_contig10195:9683..11383Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10195 9684..11383 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815591.6253316-CDS-P-canaliculata_contig10195:5352..55891622815591.6253316-CDS-P-canaliculata_contig10195:5352..5589Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10195 5353..5589 +
1693494154.6160378-CDS-P-canaliculata_contig10195:5352..55891693494154.6160378-CDS-P-canaliculata_contig10195:5352..5589Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10195 5353..5589 +
1622815591.6373298-CDS-P-canaliculata_contig10195:7196..72401622815591.6373298-CDS-P-canaliculata_contig10195:7196..7240Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10195 7197..7240 +
1693494154.6242616-CDS-P-canaliculata_contig10195:7196..72401693494154.6242616-CDS-P-canaliculata_contig10195:7196..7240Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10195 7197..7240 +
1622815591.6506238-CDS-P-canaliculata_contig10195:8091..81521622815591.6506238-CDS-P-canaliculata_contig10195:8091..8152Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10195 8092..8152 +
1693494154.6331408-CDS-P-canaliculata_contig10195:8091..81521693494154.6331408-CDS-P-canaliculata_contig10195:8091..8152Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10195 8092..8152 +
1622815591.6645424-CDS-P-canaliculata_contig10195:8437..85511622815591.6645424-CDS-P-canaliculata_contig10195:8437..8551Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10195 8438..8551 +
1693494154.6434314-CDS-P-canaliculata_contig10195:8437..85511693494154.6434314-CDS-P-canaliculata_contig10195:8437..8551Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10195 8438..8551 +
1622815591.6803837-CDS-P-canaliculata_contig10195:8923..91051622815591.6803837-CDS-P-canaliculata_contig10195:8923..9105Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10195 8924..9105 +
1693494154.6586263-CDS-P-canaliculata_contig10195:8923..91051693494154.6586263-CDS-P-canaliculata_contig10195:8923..9105Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10195 8924..9105 +
1622815591.6932077-CDS-P-canaliculata_contig10195:9586..96831622815591.6932077-CDS-P-canaliculata_contig10195:9586..9683Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10195 9587..9683 +
1693494154.6681054-CDS-P-canaliculata_contig10195:9586..96831693494154.6681054-CDS-P-canaliculata_contig10195:9586..9683Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10195 9587..9683 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig10195.285.1

>prot_P-canaliculata_contig10195.285.1 ID=prot_P-canaliculata_contig10195.285.1|Name=mRNA_P-canaliculata_contig10195.285.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=245bp
MSVIVFPRLRSRSPYCAGKLLLGALLLLFTVAACLGAAVVGSGGGVKGIV
QRKGDKASEDFETADSDVVQITTENYTETIKQGTWFVKFYTDWCSHCKQL
QPTWEELAKDLKGKVRVGQVNCETDRALCSRFHVKGYPTLVHVHNRKCRV
YKLKSRAKSALIYFAEKGYTKSAAISALKSPFGPIESVKARLVEAIILSR
KFVLEQVASGTPIWLLCIYAVSGLVVMTTAISLILVATKRPKQD*
back to top

mRNA from alignment at P-canaliculata_contig10195:5160..11383+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10195.285.1 ID=mRNA_P-canaliculata_contig10195.285.1|Name=mRNA_P-canaliculata_contig10195.285.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=6224bp|location=Sequence derived from alignment at P-canaliculata_contig10195:5160..11383+ (Pelvetia canaliculata dioecious)
ACAGTGTTTGTGCTGATCTACAAAGAGTTCCATCTCGATCAAAAAGCGTT
CCAAAAACGGGGCGTATTCATTGGTCTGGTATCCAGTAGATTGCTACAGT
ACCTTCGCGGAATCGAGGTAAGAGACGTTTTTACCGCACGGTCGCTCGAG
AAAGTAATCTCCCCAAGACTTCAGGGTGTTCGTGAATTCTACTATGAGTG
TAATCGTATTTCCGCGATTAAGAAGCCGCAGCCCTTATTGTGCAGGGAAG
CTCTTGCTCGGCGCACTCCTCCTGTTGTTCACAGTCGCTGCTTGCCTGGG
CGCGGCCGTGGTCGGAAGCGGTGGAGGCGTAAAGGGAATAGTACAGCGCA
AGGGCGACAAGGCATCGGAAGATTTCGAGACTGCAGACAGCGATGTCGTC
CAGATTACCACGGAAAATTATACCGAGACTGTGAGAACTTCTGGCTCGTC
CTCTACCTACCTTACTGCTGAACATAAGTTTGTTCTGCTAACCCATTACA
TTTTCGCCTGCAGCCAATGCCCTAACCCGATCCCAAACCCAATACTATTA
AATAGTACATACTAATCATAACATTACTGAGTCATATCCAGGTTCCTCGG
TGCTCTTGCCTCTGTTTTGCTTTTTTTTTAAAGAAAAATCTAAACGCATA
TAAACCTTCTGAGCATCCATCCACCTTCAGTGGAAAAAATGTCTCAAGTC
CTGGTGTACCTTCATGGCGTTTGACGTACAGCATAACGGTGGGCTCCTCC
TCGAAATTACACAGTTGATCCAATGCTACCAATACCATCGGGAAACCCAC
GAAATGCCATGTAGAGTTTTTGTCCTTAGTCTATGCTCCTGAATAGTCTA
TATACCTAAACGTTTCGACAATCTTCCCCCTGGTTGAGTGGATGCGCAGG
AGGTTCAGATGCGTTCCTTAATTTTTTTTCTTGGTATTCAAATTTTGCTA
TGTGTAGCCTAGAGTCAATCAGTGTAATATCGGGGAGAAATGCACCGCCA
TAATGCACCGCTATATCGTGCACTCTACATGAGGAGAGACGAGGTATGTA
GATGGCGGGGAGCTGGTATTATTTTTTTATTTTCTTACAAAATATGACTC
CTCCGAAAAGGTGGTGCACTACTCGTAGAACCTTGCTTGTTTTCCCCCGT
TGCGGTCGGCGATCGTTCAAGAACTCCATGGTGATGTCCGCCATGCAACC
AAAAAGATACCAGTAATCCTACCTTCTTTGTAGCTCTACTATATTGCACA
GGTACCAAATCTAGGATCTCAGTATTATACTGTACTGGTATTATGGCATG
AATAGCTGTGCCCACCTGAACCTCTCCATGTGTCGGCGAGATTCTTGTGT
GTGCAGAGTTCCTTGCACAGGTACCAATTCTAGGATCTCAGTATTATACT
GTACTGGTATTATGGCATGTCGGCGAGATTCTTGTGTGTGCAGAGTTCCG
GACAAAAAATCTGAACGCATCCAAACCACCTTCGGAGCATCCACACTACC
TCTATCAATGGGAGTTGCCAGTGTCGAAACATTTTGTCTGGGGACGTACA
ATGTTATTCATAGTGCAAAAACTCCACTCGGGATCCCGTCGGGTTCCGTT
CTGTTGGCACAAATTGTTGTGGGCTCCTGAGTTGCCACGTGTATGTGGGG
GGGGGGATAGTTCCACACGCCTACGCTTTTCATTCCCTTCTTAATTTCAA
GACGTTAACAAGAGCCTTCTAATGGTTGAGGCTTGCTTGCTCGCGCGTTT
TCCCGCACAGCCGCCAACAACTGGCGCACACGTAACAGCAGCAAGATTTC
CCGAGATTCGAACTCTCAGCACCACTCCAAAGCGGATCGTGCGGGTTACC
AGGTGGATGGGCGGCCACACACTCTAGAGCTCTCTTATAACAAAAACATC
ACCGTCGACGCGACTCGACGTCTCTCTGGTTACATATCTCCCATACAGCT
CTAGGCCTTATCTTTCCCCCCGCCTGCCCTACCCTGTGTGTGGCCTTACA
TGCGTTCCCGGCAACTATAAAATGCCCTTGATCACAGATAAAGCAGGGCA
CCTGGTTCGTCAAGTTCTACACGGATTGGTGGTGAGTTTTTTTTATGACT
TCGTAACTACTACCTGGTATTAATATTATAGATCGCTACAGAACGGTATT
AATAGCTTTTCTTTCTTTCATCTACTCAAGTAATTTGTGCCAAATAACTG
CACCTAACTCTCCACCCCGAATTATTTGTCTTCTAGAATCAAAAGTGGTT
CTTATGTGTTCCGTTCTTGCCGACTTAACTTCACAAAACACGAGCGTGTA
ACCGGATTCAGCCTGAGTGTGACATTGCTCTCATTCAAATAGCCATCCAA
TAACTGTAGCATGTAGTTCCTAGTTCCTGTCGGCTGCCCAGCGGGAAGAG
TCCCCTCGTCTTCCCATTTAAATATCACGTCGAAGAAAGCGAGGTTGGAT
CGCAGGAGCTGGTGCGTAGTTTGCATCTCCAGAAACACAGCTCGTGCTCC
CCCAAGGAGGAGGCGTGTCTTGTAATATTAATAGTAAGAAGTTCTCTGGA
GTTTATTAGGATTACAGCTCTCTTGAGTGCGTCTACTTGAGCCCCCTCTT
TGTAAATCAAAAATCCGAGAGGGCGGGGCTGGGTCGCGGCTTTCGAGTTT
GTTCGCTGGGGTTATCGTACTTGGGCTGCCCCGACGAAAAAGGCGGCAAA
ATTATCTTACGACAACTGCCTCTCGGATCACATATGTACGCGAACGAATC
AAAATTTCTGCTCGAATCATAGTACCTTGTGAACGTGGATCGCGAGAATG
ATCTGTACAGATTTACCACCCCCCCTCCCCCCTCCCTGTAGGACAAAAAC
AAATCAAAACATTACCCATTATCTGACAAAAAAACGCAACTTTTTCTTTT
TTACCTCATGCTACGCGCGAAACAAATCAAAGCTCACACTGCAAGCAACT
TCAGCCGACTTGGGAGGAGCTGGCCAAGGATCTCAAGGGAAAGGTCTGCT
AAATCATTGGGTTCTGGATCGTATATCGCCTCTTGTTGGTTTTGGGACTA
TGATAGACGTATTCAACGGGGCTGTGATGTCTCACTGAACAACGACGACT
CGGTGCTTGCGTCGAGCTCGCTATATCCTTCCGCTATGCGTGCGTGGGGT
GGCTAACGCTCGAATCGTGTCATGAGCCGAAATCCATATCGATGTTTGGT
TGTCTTACCCAAGTCCCGTCGTTCGAGTGGCGGAGGTGACGTTCGTGTCG
GCGCCCGCCCTATTGAAATTTCCCCAAGGTGCGGGTGGGTCAGGTGAATT
GCGAAACGGACAGAGCGCTTTGCAGCCGCTTTCACGTCAAGGGATATCCA
ACCCTGGTTCACGTTCACAATCGCAAGTGCCGCGTGTATAAGGTAAGCGA
TCTCTCTTGTGACGAACAGATCTACACCAAGGTAAGCCGGCCGCGCCGGA
CCAATACGCGTGCGATTCGACGCATGTCCTGGCCAGCTCAGACGGGCCAC
ACGTTTTGCAAAGAATTCCAAACAGGAACACAGGCCAGGCGGCACCAAGT
TGTTGCGGCATTCCGTGATTGAAAGCGAAGGTTTGCAGGAGAGAGTAGGC
CATCGGTAATGTCGGTTGAGTTGCGGCCTCTGCTGCGCTGCTTGCTTGAT
GGCACGATTTATGTTTGTTCATATTTGTGCCCCGTAAGCCTCAGGGGTCT
CCCTCGCCCTCATTTTCGACCCGCGAATCGTCTGATCCCTCAACGCGTGT
GCGTGAATCCGCAGCTAAAATCGCGTGCCAAGAGCGCCTTGATTTACTTT
GCGGAGAAGGGGTACACGAAGTCGGCGGCGATATCCGCGTTGAAGTCTCC
CTTCGGACCTATCGAGAGCGTCAAGGCCCGTCTAGTGGAGGCCATCATAC
TCTCACGGAAGTTCGTCTTGGAACAAGTGGCATCGGGGACACCAATGTGA
GTCCAACCATTACCGGTGGGGGGGCAGGAGTGAGGGAGGGATTTTTTGCG
TTAAATGCGTCGACCGACGCTCGCCCCGCCGCGTGTGCTGCAGATCAAGG
GTCTTGTCAAGTGTGCATGACCGCGTCCTTTTGTTGCGACGATGGCTTGT
GGTGGCGAACAGCTTTAGAGAGCATCAGACGGGCGTGTGCAGCAGCCACT
CGGCGAAGAGAGGTTTGACGTCGCTCGATGAGATGTCTGTGCAAGAACGG
CGTCGAAGACACCGCCTGCACCCAAGAAAAGATATCCCCGCACGAGGAAC
GTAAAATACTGCTTCCCTCCTCCCCAGTTCCCTCTCTCTCTATTTTTTCT
GTTACGTGTGAGTTTGACCACGTTTTGTATTGGTTTCAGCATGTAACCTC
ATCATCCCGCCCTCCCGCCCCCCCACGCCTTCGTCTTGACCAAAATTGCG
AATCACGTGCATGTCGATATTACGTAGATGGTTATTGTGCATCTATGCCG
TGAGCGGGCTTGTGGTTATGACGACTGCCATCTCATTAATCCTGGTGGCA
ACCAAGAGACCAAAACAAGATTGAAGGAGTCGGGCGCTGGCGAAGGTTTT
GCCGGAAGACTCTGATCCCGTCTCGCCTTACGCTACGGTTATATGTTTCA
ATGTGTTGTAGTATTGGTGGTACTACTGTGTAAGGTGAATGGAGTAGTTA
CTGGAATGTTACTGGGATGTAGATGTAAAGCTATCGATAGTAGGTAATAT
GATGCGGTGTGTAGGTGTACCAAGGGGGACGGCGAGAGTCACGACAATAG
GGGGATAGAAGCCCCCGATCCCCCCTCCTCCCCCACCTTAAGTTGACAGC
CGTGAGCAAGCTCCTCGTACGCATTTGACATTCGGCGAAATCGTCGCCCA
TCCGCAGAAACTAGCGTTTGATTTCTGCGTTTTTACATAGTTACGCTAGA
AAACCGGGCGGGGACACCAATACAAATCTTACAAAGGGTCCTTACAAAAA
CCGTCATCCCGTCACCCACGGTGTGTGCCCTGACGCATGGCCTCCCGCGC
CTTCCTGAGAGCGAGTGGTGATGAGGAAAAAGAGAGAAGACTCGTCACCT
TTTTATCTCTGTTTTGGCGAGAGTTGAATGGGGAATCTTACCCATTGAAG
ACGTTTGCTCGGTGTACCAGCTGAGGACGCTGGACTTCGAGGGAGTTCGT
ACTGATGACCTCCCGACGCGTGACTCTTGAGGGTGTGTTATTGGCACCCG
TCACCTGTGTAGTAACGCAGTTTTCGTGTGTCGGCAGACCCAAGCGCCTT
GTGATTGGATAGACGTGATTTCTAACCAAGCGCCCCCGGATTCGAAATCG
TTATCCGTGCCCTATATTATATTTCCCTTCTATCACGACAGCAGTCTTCC
TTTCGAGTTGTGGTAAAGCTTTGAGCTCCCTGTAAATGTTGGGAGCCTAG
GCTGGATCTGTCGTCTCCGAACGTGTTTGTGTCGCGGTAATTTTCGGTTT
CCGCTCCGAAGTTCGGTACGTTGCCCAAACGGGCGCTTCTGAGACAGCTC
GAGGGTACGAAATGTGCCGGTGACAGGGCGTGGACTCCGCCCGGAGTCGG
CATCGAATCCGTCCAAAAGGGGACCCCCCGGGTTCTGGTTTTGCTACTCG
CTCGTTACGTATAATACAAGTTTTGCAACGTTTCGAGTACTCGTAGTGGT
TTCGCGTCTCGACGGGGCGAAAACGCTTGTGAGAATGATTCATCAAACAA
CGCGAAAGCGACGTTTTTGGGGTTTTGAAGTCGGGATGTCGCTCGCTCGG
CGTAGGAACGCAAGTAAACTACACTTCCGTACCTATCCAAATCGGGCTTC
CGTCAACAGAAATTGCGATCGTCAGTTGTAAATGTTCAAAATTCTTTCAT
CGCTTCTGTTTTTACTCGCCCCCCCACTCTGTTGCGGCATGTACGTGCGT
GCGTCGCCTATTTCGATGAGCGATGGATTTGGTTCCACTTTCACCAGTTG
CTTCGTGGAGTGTGTTTGACAAGCGCTTACCCCTTGATTTTGAGCTGAAC
GTTTGCGTTGTCTCACGGCGGGAGTCCTCCGGTCGGCGGTATGAATAGCT
TCTCGCGGACATGCTCCCCTTTCTTACTATAAATACTAAATACTTATGGT
ACACGTTACAATCACGGCTGCCTTCCATGATTATCATGATCTTGAGTACA
GTTTGCTCCCGCGCATATATTTATTCGCAACCGCCCTTCGTTTCATTGAC
AAGCGCGCTCTGCGTCGACTTATT
back to top

Coding sequence (CDS) from alignment at P-canaliculata_contig10195:5160..11383+

>mRNA_P-canaliculata_contig10195.285.1 ID=mRNA_P-canaliculata_contig10195.285.1|Name=mRNA_P-canaliculata_contig10195.285.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1470bp|location=Sequence derived from alignment at P-canaliculata_contig10195:5160..11383+ (Pelvetia canaliculata dioecious)
ATGAGTGTAATCGTATTTCCGCGATTAAGAAGCCGCAGCCCTTATTGTGC
AGGGAAGCTCTTGCTCGGCGCACTCCTCCTGTTGTTCACAGTCGCTGCTT
GCCTGGGCGCGGCCGTGGTCGGAAGCGGTGGAGGCGTAAAGGGAATAGTA
CAGCGCAAGGGCGACAAGGCATCGGAAGATTTCGAGACTGCAGACAGCGA
TGTCGTCCAGATTACCACGGAAAATTATACCGAGACTATGAGTGTAATCG
TATTTCCGCGATTAAGAAGCCGCAGCCCTTATTGTGCAGGGAAGCTCTTG
CTCGGCGCACTCCTCCTGTTGTTCACAGTCGCTGCTTGCCTGGGCGCGGC
CGTGGTCGGAAGCGGTGGAGGCGTAAAGGGAATAGTACAGCGCAAGGGCG
ACAAGGCATCGGAAGATTTCGAGACTGCAGACAGCGATGTCGTCCAGATT
ACCACGGAAAATTATACCGAGACTATAAAGCAGGGCACCTGGTTCGTCAA
GTTCTACACGGATTGGTGATAAAGCAGGGCACCTGGTTCGTCAAGTTCTA
CACGGATTGGTGCTCACACTGCAAGCAACTTCAGCCGACTTGGGAGGAGC
TGGCCAAGGATCTCAAGGGAAAGCTCACACTGCAAGCAACTTCAGCCGAC
TTGGGAGGAGCTGGCCAAGGATCTCAAGGGAAAGGTGCGGGTGGGTCAGG
TGAATTGCGAAACGGACAGAGCGCTTTGCAGCCGCTTTCACGTCAAGGGA
TATCCAACCCTGGTTCACGTTCACAATCGCAAGTGCCGCGTGTATAAGGT
GCGGGTGGGTCAGGTGAATTGCGAAACGGACAGAGCGCTTTGCAGCCGCT
TTCACGTCAAGGGATATCCAACCCTGGTTCACGTTCACAATCGCAAGTGC
CGCGTGTATAAGCTAAAATCGCGTGCCAAGAGCGCCTTGATTTACTTTGC
GGAGAAGGGGTACACGAAGTCGGCGGCGATATCCGCGTTGAAGTCTCCCT
TCGGACCTATCGAGAGCGTCAAGGCCCGTCTAGTGGAGGCCATCATACTC
TCACGGAAGTTCGTCTTGGAACAAGTGGCATCGGGGACACCAATCTAAAA
TCGCGTGCCAAGAGCGCCTTGATTTACTTTGCGGAGAAGGGGTACACGAA
GTCGGCGGCGATATCCGCGTTGAAGTCTCCCTTCGGACCTATCGAGAGCG
TCAAGGCCCGTCTAGTGGAGGCCATCATACTCTCACGGAAGTTCGTCTTG
GAACAAGTGGCATCGGGGACACCAATATGGTTATTGTGCATCTATGCCGT
GAGCGGGCTTGTGGTTATGACGACTGCCATCTCATTAATCCTGGTGGCAA
CCAAGAGACCAAAACAAGATTGAATGGTTATTGTGCATCTATGCCGTGAG
CGGGCTTGTGGTTATGACGACTGCCATCTCATTAATCCTGGTGGCAACCA
AGAGACCAAAACAAGATTGA
back to top