mRNA_P-canaliculata_contig101934.282.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig101934.282.1
Unique NamemRNA_P-canaliculata_contig101934.282.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig101934.282.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig101934contigP-canaliculata_contig101934:28..1003 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size392
Cds size306
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig101934.282.1prot_P-canaliculata_contig101934.282.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig101934 28..918 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815591.4577298-CDS-P-canaliculata_contig101934:27..1941622815591.4577298-CDS-P-canaliculata_contig101934:27..194Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101934 28..194 +
1693494154.5332692-CDS-P-canaliculata_contig101934:27..1941693494154.5332692-CDS-P-canaliculata_contig101934:27..194Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101934 28..194 +
1622815591.468713-CDS-P-canaliculata_contig101934:779..9181622815591.468713-CDS-P-canaliculata_contig101934:779..918Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101934 780..918 +
1693494154.5429933-CDS-P-canaliculata_contig101934:779..9181693494154.5429933-CDS-P-canaliculata_contig101934:779..918Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101934 780..918 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815591.483161-UTR-P-canaliculata_contig101934:918..10031622815591.483161-UTR-P-canaliculata_contig101934:918..1003Pelvetia canaliculata dioeciousUTRP-canaliculata_contig101934 919..1003 +
1693494154.553776-UTR-P-canaliculata_contig101934:918..10031693494154.553776-UTR-P-canaliculata_contig101934:918..1003Pelvetia canaliculata dioeciousUTRP-canaliculata_contig101934 919..1003 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig101934.282.1

>prot_P-canaliculata_contig101934.282.1 ID=prot_P-canaliculata_contig101934.282.1|Name=mRNA_P-canaliculata_contig101934.282.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=102bp
ARADQAQLSKIYCHTRDVNLSRTLICSVCHVLRKCTHGDSAAYLHRARPG
AIGHRRCSCLGRVVVSLRQVSRLPTHRGLAEVRGRVEKRRRRPGQTSPGE
E*
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mRNA from alignment at P-canaliculata_contig101934:28..1003+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig101934.282.1 ID=mRNA_P-canaliculata_contig101934.282.1|Name=mRNA_P-canaliculata_contig101934.282.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=976bp|location=Sequence derived from alignment at P-canaliculata_contig101934:28..1003+ (Pelvetia canaliculata dioecious)
GCTCGGGCCGATCAAGCACAACTCTCAAAAATATATTGCCACACGAGAGA
CGTCAACTTGTCTCGGACCTTGATCTGCAGTGTTTGCCATGTGCTACGCA
AATGCACACACGGCGATAGCGCAGCCTACCTGCACCGAGCTCGCCCGGGG
GCCATAGGTCACAGGAGGTATTTGAAGGGTTATGACCGTTGTCCAAATAG
TATAGACTACTGAGAAACTACGAGGAACGGTCCTCGGATCCGAGACGATT
TTCTTGGTATCGTGCCACGTGACCTGCAATCCCCCCCCAGGCCAATATCC
CTGAGTCATAGGATCACGTATGTACTTTGCAGAGCTGCCATGGCGCAGTG
GTTTCTCCGTTCTCCGAGGCGCCCCGAGAGGGCTCTTCAGTTTTCTCTCT
GTTTTAAAGCTCCATTTGGCCTCCCACCCATTGGCTAGTAGCTACAGTCG
TGTGACGGTTTCATCAGTATTTTGTGCGCAAAATATATATTTTTCGGCCC
AAGTCCGTGGGGCCCCGCTAAGTAGTTATTATTAGTAATGACAAATATTA
TATTAGTTATTACTGTATGTAATGGACGCCGCCGCGGAAATTGGGAGGAA
TCCCGTAGGTAAGCACCAGATTCAGCCTGAGTATGGAGATGAGCAGGCTG
ACTATACATACTGGAAACCTTCCGAGAATGCACTAGAAGTATTATTTATT
AGCGGGGACCGACCATGTTGTGCTCTTGTCCCCGTGTACACTATCATAAC
AGATGTTCATGCCTGGGACGGGTCGTAGTATCCCTGCGTCAAGTTTCGAG
GCTGCCCACTCACAGAGGGTTGGCGGAGGTTCGTGGCCGCGTGGAGAAAA
GGAGAAGAAGACCCGGCCAGACGTCGCCAGGAGAAGAATGAGGCAACGAG
ATTGGGAAAGTTGTTGACGCACACGGAAGCGTAGAATTTTGCGAAGCGAC
GCCCATTGGCCTATAGCCGACGAGCC
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Coding sequence (CDS) from alignment at P-canaliculata_contig101934:28..1003+

>mRNA_P-canaliculata_contig101934.282.1 ID=mRNA_P-canaliculata_contig101934.282.1|Name=mRNA_P-canaliculata_contig101934.282.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at P-canaliculata_contig101934:28..1003+ (Pelvetia canaliculata dioecious)
GCTCGGGCCGATCAAGCACAACTCTCAAAAATATATTGCCACACGAGAGA
CGTCAACTTGTCTCGGACCTTGATCTGCAGTGTTTGCCATGTGCTACGCA
AATGCACACACGGCGATAGCGCAGCCTACCTGCACCGAGCTCGCCCGGGG
GCCATAGGTCACAGGAGGCTCGGGCCGATCAAGCACAACTCTCAAAAATA
TATTGCCACACGAGAGACGTCAACTTGTCTCGGACCTTGATCTGCAGTGT
TTGCCATGTGCTACGCAAATGCACACACGGCGATAGCGCAGCCTACCTGC
ACCGAGCTCGCCCGGGGGCCATAGGTCACAGGAGATGTTCATGCCTGGGA
CGGGTCGTAGTATCCCTGCGTCAAGTTTCGAGGCTGCCCACTCACAGAGG
GTTGGCGGAGGTTCGTGGCCGCGTGGAGAAAAGGAGAAGAAGACCCGGCC
AGACGTCGCCAGGAGAAGAATGAATGTTCATGCCTGGGACGGGTCGTAGT
ATCCCTGCGTCAAGTTTCGAGGCTGCCCACTCACAGAGGGTTGGCGGAGG
TTCGTGGCCGCGTGGAGAAAAGGAGAAGAAGACCCGGCCAGACGTCGCCA
GGAGAAGAATGA
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