mRNA_P-canaliculata_contig101918.281.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig101918.281.1
Unique NamemRNA_P-canaliculata_contig101918.281.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig101918.281.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig101918contigP-canaliculata_contig101918:25..666 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size642
Cds size327
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig101918.281.1prot_P-canaliculata_contig101918.281.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig101918 209..535 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815591.3912039-UTR-P-canaliculata_contig101918:24..2081622815591.3912039-UTR-P-canaliculata_contig101918:24..208Pelvetia canaliculata dioeciousUTRP-canaliculata_contig101918 25..208 +
1693494154.500379-UTR-P-canaliculata_contig101918:24..2081693494154.500379-UTR-P-canaliculata_contig101918:24..208Pelvetia canaliculata dioeciousUTRP-canaliculata_contig101918 25..208 +
1622815591.4186885-UTR-P-canaliculata_contig101918:535..6661622815591.4186885-UTR-P-canaliculata_contig101918:535..666Pelvetia canaliculata dioeciousUTRP-canaliculata_contig101918 536..666 +
1693494154.5233126-UTR-P-canaliculata_contig101918:535..6661693494154.5233126-UTR-P-canaliculata_contig101918:535..666Pelvetia canaliculata dioeciousUTRP-canaliculata_contig101918 536..666 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815591.404612-CDS-P-canaliculata_contig101918:208..5351622815591.404612-CDS-P-canaliculata_contig101918:208..535Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101918 209..535 +
1693494154.5143301-CDS-P-canaliculata_contig101918:208..5351693494154.5143301-CDS-P-canaliculata_contig101918:208..535Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101918 209..535 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig101918.281.1

>prot_P-canaliculata_contig101918.281.1 ID=prot_P-canaliculata_contig101918.281.1|Name=mRNA_P-canaliculata_contig101918.281.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=109bp
MLSPQRSGVPGAPASAPSPSSPVMPAGGARPSSHPRLRSPPENHFSSSPL
QNFRQISPVWDRSSSAFLRAPSMALLPRSNWTFSQKLPSRGHLPPGSPTL
PAVAVSRP*
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mRNA from alignment at P-canaliculata_contig101918:25..666+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig101918.281.1 ID=mRNA_P-canaliculata_contig101918.281.1|Name=mRNA_P-canaliculata_contig101918.281.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=642bp|location=Sequence derived from alignment at P-canaliculata_contig101918:25..666+ (Pelvetia canaliculata dioecious)
GTCACGAGCTTTTCCGGCACCGCATCCCTCAGCGCCGTCGCACCACCGGC
CACTACCTTCGACCGCGCCTTCGATCCAGAATTGCTACCGCTTACTATAT
CGCAAAACTTCACTGCCAGAACCTTGGGAAACCGTTTTACGGCAGAAGAA
GAAATTACGATCCTCTCGGTTCAGCATCCTTCCAATGCTCTCTCCGCAAC
GATCTGGAGTGCCGGGCGCACCCGCCTCCGCACCCTCACCCTCGAGCCCG
GTGATGCCGGCGGGTGGGGCGAGACCCAGCTCGCATCCCCGCTTACGATC
GCCGCCGGAGAATCATTTCTCGTCGTCACCACTACAGAATTTTCGTCAGA
TTTCCCCCGTCTGGGATCGGAGCAGTTCCGCTTTCCTGAGGGCACCGTCG
ATGGCGCTTTTACCTCGTTCGAACTGGACGTTTTCCCAGAAACTTCCGTC
TCGGGGACATTTGCCGCCGGGTTCACCTACGCTGCCGGCGGTGGCGGTTT
CACGCCCGTAAGCCCGGCCACCACAGGCTTCTTCACCGATGGCCGTTGGA
CTGGTGAAATCACCGTCGGCACCGCTGCCCCTGCCGTCCAGCTCGTCGCA
ACCGGGGCCCCTGCCCCCGGCCTCTCCTCGCCGGTTACCATC
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Coding sequence (CDS) from alignment at P-canaliculata_contig101918:25..666+

>mRNA_P-canaliculata_contig101918.281.1 ID=mRNA_P-canaliculata_contig101918.281.1|Name=mRNA_P-canaliculata_contig101918.281.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=654bp|location=Sequence derived from alignment at P-canaliculata_contig101918:25..666+ (Pelvetia canaliculata dioecious)
ATGCTCTCTCCGCAACGATCTGGAGTGCCGGGCGCACCCGCCTCCGCACC
CTCACCCTCGAGCCCGGTGATGCCGGCGGGTGGGGCGAGACCCAGCTCGC
ATCCCCGCTTACGATCGCCGCCGGAGAATCATTTCTCGTCGTCACCACTA
CAGAATTTTCGTCAGATTTCCCCCGTCTGGGATCGGAGCAGTTCCGCTTT
CCTGAGGGCACCGTCGATGGCGCTTTTACCTCGTTCGAACTGGACGTTTT
CCCAGAAACTTCCGTCTCGGGGACATTTGCCGCCGGGTTCACCTACGCTG
CCGGCGGTGGCGGTTTCACGCCCGTAAATGCTCTCTCCGCAACGATCTGG
AGTGCCGGGCGCACCCGCCTCCGCACCCTCACCCTCGAGCCCGGTGATGC
CGGCGGGTGGGGCGAGACCCAGCTCGCATCCCCGCTTACGATCGCCGCCG
GAGAATCATTTCTCGTCGTCACCACTACAGAATTTTCGTCAGATTTCCCC
CGTCTGGGATCGGAGCAGTTCCGCTTTCCTGAGGGCACCGTCGATGGCGC
TTTTACCTCGTTCGAACTGGACGTTTTCCCAGAAACTTCCGTCTCGGGGA
CATTTGCCGCCGGGTTCACCTACGCTGCCGGCGGTGGCGGTTTCACGCCC
GTAA
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