mRNA_P-canaliculata_contig10190.276.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig10190.276.1
Unique NamemRNA_P-canaliculata_contig10190.276.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig10190.276.1 vs. uniprot
Match: A0A5N7BJ63_9EURO (Alginate lyase 2 n=1 Tax=Aspergillus bertholletiae TaxID=1226010 RepID=A0A5N7BJ63_9EURO)

HSP 1 Score: 210 bits (535), Expect = 4.380e-62
Identity = 119/257 (46.30%), Postives = 155/257 (60.31%), Query Frame = 1
Query:  292 LVALVASLAHLSLVA-GAGCAPGGILDLSIYELHLPTYSGGEFDIDIEREDKIAGCNGYSDKNFFAGESSGCSSGTGKAYVQMDVCGSPSSCDCDTTGNSDHCRTELREVLPTR----EWDPKGPVNRLRATVRVMAADNGNRGTIIGQIHVNTDDVSAPAAKLYYSESGMLTFDVKTSIDDGEDMYTELGVIPLGEKFTYEIRYENDELSVSINDGEFQKFDTYDLNAPPCDFKVGNYNQGDTPSSVRFYALEISH 1047
            L+A +  LA    VA    CAPGG  DLS + L LPT   G      +   ++ GC+GY +   F  +S           + M V GSPSS  C TT NS HCRTELRE+ P       W P    NRLRATV V   D+G+ GT+IGQIH++    + P  +LYYS+SG L   V+ + D G+ ++T++G +P+G+KF+YEIRYE++ELSVSIN  E +K DTY LN+P   FK GNYNQGD+ S V FY L+I H
Sbjct:    7 LIAAILCLAIEGTVALDPKCAPGGNFDLSYWNLQLPTGKTGH--PTTKTPSQLKGCDGYQESGVFYTDSK-------DGALVMKVPGSPSSAGCVTTPNSKHCRTELRELSPDSGDKASWSPSASKNRLRATVTVPTPDDGSHGTVIGQIHIDDTISTKPVCELYYSKSGDLVMGVEKTRDGGKSIFTKVGSVPVGDKFSYEIRYESNELSVSINGEEPKKLDTYSLNSPKSYFKAGNYNQGDSASEVHFYELDIQH 254          
BLAST of mRNA_P-canaliculata_contig10190.276.1 vs. uniprot
Match: A0A4S3JMN1_9EURO (Alginate_lyase2 domain-containing protein n=2 Tax=Aspergillus tanneri TaxID=1220188 RepID=A0A4S3JMN1_9EURO)

HSP 1 Score: 202 bits (514), Expect = 5.530e-59
Identity = 113/254 (44.49%), Postives = 147/254 (57.87%), Query Frame = 1
Query:  313 LAHLSLVAGAG-----CAPGGILDLSIYELHLPTYSGGEFDIDIEREDKIAGCNGYSDKNFFAGESSGCSSGTGKAYVQMDVCGSPSSCDCDTTGNSDHCRTELREVLPTR----EWDPKGPVNRLRATVRVMAADNGNRGTIIGQIHVNTDDVSAPAAKLYYSESGMLTFDVKTSIDDGEDMYTELGVIPLGEKFTYEIRYENDELSVSINDGEFQKFDTYDLNAPPCDFKVGNYNQGDTPSSVRFYALEISH 1047
            L  L  + GA      CAPGG  DLS++ L LP    G          K+ GCNGY +K FF  +       T    + M V GSP + DC TT NS HCR+E RE+ P       WDP    NRL+AT+ V   D+   GT+IGQIH++    S P  +LYYS+SG LT  V+ + D G+  +T++G + +G KFTYEIRYE+D+LSVSIN G  +  DTY+L +P   FK GNYNQG++ S V FY L + H
Sbjct:    8 LVSLLAIQGASALDPKCAPGGNFDLSVWNLQLPIGEKGHPTTITPA--KLKGCNGYQNKKFFYTD-------TQDGSLVMKVPGSPDNSDCVTTPNSKHCRSEFRELAPDSGDKASWDPSESTNRLKATLTVTNPDDSKHGTVIGQIHIDDKISSKPVCELYYSKSGDLTMGVERTRDGGDSKFTKVGNVAVGTKFTYEIRYESDKLSVSINGGSPKSLDTYELKSPKSYFKAGNYNQGESASEVHFYELTVQH 252          
BLAST of mRNA_P-canaliculata_contig10190.276.1 vs. uniprot
Match: B8NU59_ASPFN (Alginate_lyase2 domain-containing protein n=18 Tax=Aspergillus TaxID=5052 RepID=B8NU59_ASPFN)

HSP 1 Score: 202 bits (513), Expect = 8.280e-59
Identity = 117/264 (44.32%), Postives = 154/264 (58.33%), Query Frame = 1
Query:  283 RTGLVALVASLAHLSLVAGAG-----CAPGGILDLSIYELHLPTYSGGEFDIDIEREDKIAGCNGYSDKNFFAGESSGCSSGTGKAYVQMDVCGSPSSCDCDTTGNSDHCRTELREVL----PTREWDPKGPVNRLRATVRVMAADNGNRGTIIGQIHVNTDDVSAPAAKLYYSESGMLTFDVKTSIDDGEDMYTELGVIPLGEKFTYEIRYENDELSVSINDGEFQKFDTYDLNAPPCDFKVGNYNQGDTPSSVRFYALEISH 1047
            ++ L A++  LA    V GA      CAPGG  DLS + L LPT   G      +   ++ GC+GY +   F  +S           + M V GSPSS  C TT NS HCRTELRE+         W P  P NRL+ATV V   D+G+ GT+IGQIH++    + P  +LYYS+SG L   V+ + D G  ++T++G + +GE+F+YEIRYE+DELSVSIN    QK DTY L++P   FK GNYNQGD+ S V FY L + H
Sbjct:    4 KSALTAVILCLA----VEGAAALDPKCAPGGNFDLSYWNLQLPTGKTGH--PATKTPSQLKGCDGYQESGVFYTDSK-------DGALVMKVPGSPSSTACVTTPNSKHCRTELRELSFDSGDKASWSPSAPKNRLKATVTVPTPDDGSHGTVIGQIHIDDTISTKPVCELYYSKSGDLVMGVEKTRDGGNSIFTKVGNVSVGERFSYEIRYESDELSVSINGAAPQKLDTYSLDSPRSYFKAGNYNQGDSASEVHFYELNVEH 254          
BLAST of mRNA_P-canaliculata_contig10190.276.1 vs. uniprot
Match: S3DSQ4_GLAL2 (Concanavalin A-like lectins/glucanase n=1 Tax=Glarea lozoyensis (strain ATCC 20868 / MF5171) TaxID=1116229 RepID=S3DSQ4_GLAL2)

HSP 1 Score: 201 bits (512), Expect = 9.410e-59
Identity = 108/243 (44.44%), Postives = 148/243 (60.91%), Query Frame = 1
Query:  319 HLSLVAGAGCAPGGILDLSIYELHLPTYSGGEFDIDIEREDKIAGCNGYSDKNFFAGESSGCSSGTGKAYVQMDVCGSPSSCDCDTTGNSDHCRTELREVLPTREWDPKGPVNRLRATVRVMAADNGNRGTIIGQIHVNTDDVSAPAAKLYYSESGMLTFDVKTSIDDGEDMYTELGVIPLGEKFTYEIRYENDELSVSINDGEFQKFDTYDLNAPPCDFKVGNYNQGDTPSSVRFYALEISH 1047
             L+L     CAPGG  DL+ + L L T   G+   D     ++AGC GY DK+ F  +S           + M V GSP+S  C TT NS HCRTELRE+ P+  WDP    NRL AT++V  AD+ N GT+IGQIH++    + P  +LYY+++G++T  V+ +   G  +YT++G +P+G KF Y I YE + L V+IN G+ +   T +L+AP   FKVGNYNQGD+ S VRFYA+E  H
Sbjct:   15 RLALALNTDCAPGGNFDLTGWNLQLSTGDPGK--PDTIPGSQLAGCKGYQDKSTFYTDSK-------DGALVMKVIGSPASTGCVTTKNSKHCRTELREIKPS-SWDPNAKTNRLNATIQVTKADDSNYGTVIGQIHIDDSISTKPVCELYYNKAGVITMGVEKTRAGGSSIYTQVGNVPVGTKFDYAIIYEKNVLGVTINGGKLKTLSTNELDAPKSYFKVGNYNQGDSASEVRFYAIETKH 247          
BLAST of mRNA_P-canaliculata_contig10190.276.1 vs. uniprot
Match: A0A0L1J0H4_ASPNO (Alginate_lyase2 domain-containing protein n=2 Tax=Aspergillus TaxID=5052 RepID=A0A0L1J0H4_ASPNO)

HSP 1 Score: 201 bits (510), Expect = 2.320e-58
Identity = 116/260 (44.62%), Postives = 152/260 (58.46%), Query Frame = 1
Query:  283 RTGLVALVASLAHLSLVA-GAGCAPGGILDLSIYELHLPTYSGGEFDIDIEREDKIAGCNGYSDKNFFAGESSGCSSGTGKAYVQMDVCGSPSSCDCDTTGNSDHCRTELREVLPT----REWDPKGPVNRLRATVRVMAADNGNRGTIIGQIHVNTDDVSAPAAKLYYSESGMLTFDVKTSIDDGEDMYTELGVIPLGEKFTYEIRYENDELSVSINDGEFQKFDTYDLNAPPCDFKVGNYNQGDTPSSVRFYALEISH 1047
            ++ L+A V  LA    VA    CAPGG  DLS + L LPT   G     +    K+ GC+GY +   F  +S           + M V GSPSS  C TT NS HCRTELRE+         W P    NRL+AT+ V   D+G+ GT+IGQIH++    S P  +LYYS+SG L   V+ +   G+ ++T++G +P+GEKF+YEIRYE+D+LSVSIN    Q  DTY L++P   FK GNYNQGD+ S V FY L + H
Sbjct:    4 KSSLIAAVLCLAIEGTVALDPKCAPGGNFDLSYWNLQLPTGETGHPSTIVPS--KLKGCDGYQESGVFYTDSK-------DGALVMKVPGSPSSAHCVTTPNSKHCRTELRELSSDGGDKASWSPSASKNRLKATLTVPTPDDGSHGTVIGQIHIDDTISSKPVCELYYSKSGDLVMGVEKTRAGGKSIFTKVGNVPVGEKFSYEIRYESDKLSVSINGEAPQTLDTYSLDSPKSYFKAGNYNQGDSASEVHFYELNVQH 254          
BLAST of mRNA_P-canaliculata_contig10190.276.1 vs. uniprot
Match: A0A0F4YMS4_TALEM (Alginate lyase n=1 Tax=Rasamsonia emersonii CBS 393.64 TaxID=1408163 RepID=A0A0F4YMS4_TALEM)

HSP 1 Score: 199 bits (507), Expect = 6.470e-58
Identity = 112/255 (43.92%), Postives = 150/255 (58.82%), Query Frame = 1
Query:  304 VASLAHLSLVAGA---GCAPGGILDLSIYELHLPTYSGGEFDIDIEREDKIAGCNGYSDKNFFAGESSGCSSGTGKAYVQMDVCGSPSSCDCDTTGNSDHCRTELREVLPTR----EWDPKGPVNRLRATVRVMAADNGNRGTIIGQIHVNTDDVSAPAAKLYYSESGMLTFDVKTSIDDGEDMYTELGVIPLGEKFTYEIRYENDELSVSINDGEFQKFDTYDLNAPPCDFKVGNYNQGDTPSSVRFYALEISH 1047
            +AS   LS +A A    CAPGG  DLS +EL LP  S G          ++ GCNGY + ++F  +S+          + M V G P+S  C TT NS HCRTELRE+ P+      WDP    NRL AT+ V+ ADN   GT+IGQ+H++    S P  +LYYS++G LT  V+ +   G ++ T++G +PL  +F+YEIRYE++ LSVSIN G  Q   TY L+AP   FK GNYNQG + S V FY + + H
Sbjct:    9 LASXXXLSTLAAALNPSCAPGGNFDLSYWELQLPIGSSGH--PTTISSSQLQGCNGYQNPSYFYTDSN-------DGSLVMKVPGDPASTGCVTTPNSQHCRTELREMDPSSGAAASWDPNAATNRLSATLTVVQADNSKYGTVIGQVHIDDSVSSKPVCELYYSQNGDLTMGVEQTRSGGNEVMTKVGNVPLNTQFSYEIRYESNVLSVSINGGAQQTLSTYQLDAPKSYFKAGNYNQGSSQSEVHFYEISVQH 254          
BLAST of mRNA_P-canaliculata_contig10190.276.1 vs. uniprot
Match: V5I036_BYSSN (Alginate_lyase2 domain-containing protein n=2 Tax=Byssochlamys spectabilis TaxID=264951 RepID=V5I036_BYSSN)

HSP 1 Score: 199 bits (506), Expect = 7.360e-58
Identity = 114/259 (44.02%), Postives = 153/259 (59.07%), Query Frame = 1
Query:  277 MHRTGLVALVASLAHLSLVAGAGCAPGGILDLSIYELHLPTYSGGEFDIDIEREDKIAGCNGYSDKN--FFAGESSGCSSGTGKAYVQMDVCGSPSSCDCDTTGNSDHCRTELREVLPTREWDPKGPVNRLRATVRVMAADNGNRGTIIGQIHVNTDDVSAPAAKLYYSESGMLTFDVKTSIDDGEDMYTELGVIPLGEKFTYEIRYENDELSVSINDGEFQKFDTYDLNAPPCDFKVGNYNQGDTPSSVRFYALEISH 1047
            M+ T +  L+ S A ++L    GCAPGG  DLS + L LP  S G           + GCNGY D    +F  ES       G   + M V GSPSS  C TT NS HCRTELREV P+  WDP    NRL AT++V  AD+ + GT+IGQIH++    S P  +L+Y+ +G ++  V+ +   G ++ T +  +P+   F+YEI+YE++ LSVSIN G  + F TY L+AP   FKVGNYNQGD+PS V F+A+   H
Sbjct:    1 MYATTIATLLFSAAVIAL--NPGCAPGGNFDLSKWNLQLPIGSAGS--PTTISSSSLQGCNGYQDPGHQYFFTES-------GDGALVMKVPGSPSSSGCVTTPNSQHCRTELREVSPS-SWDPNAATNRLSATLKVTQADDSSHGTVIGQIHIDDSVSSKPVCELFYNSNGDISIGVEQTRSGGNEVVTYVDNVPVATTFSYEIQYESNVLSVSINGGAAKTFSTYSLDAPESYFKVGNYNQGDSPSDVHFFAISTQH 247          
BLAST of mRNA_P-canaliculata_contig10190.276.1 vs. uniprot
Match: A0A370U1L9_9HELO (Alginate_lyase2 domain-containing protein n=1 Tax=Venustampulla echinocandica TaxID=2656787 RepID=A0A370U1L9_9HELO)

HSP 1 Score: 198 bits (503), Expect = 2.540e-57
Identity = 110/254 (43.31%), Postives = 152/254 (59.84%), Query Frame = 1
Query:  292 LVALVASLAHLSLVAGAGCAPGGILDLSIYELHLPTYSGGEFDIDIEREDKIAGCNGYSDKN--FFAGESSGCSSGTGKAYVQMDVCGSPSSCDCDTTGNSDHCRTELREVLPTREWDPKGPVNRLRATVRVMAADNGNRGTIIGQIHVNTDDVSAPAAKLYYSESGMLTFDVKTSIDDGEDMYTELGVIPLGEKFTYEIRYENDELSVSINDGEFQKFDTYDLNAPPCDFKVGNYNQGDTPSSVRFYALEISH 1047
            ++ L  +++  +      CAPGG  DLS + L LP  S G     I+  D + GC+GY D    +F  ES       G   + M V GSPSS DC TT NS HCRTELRE  P+  WDP    NRL+ATV V  AD+  RGT++GQIH++    + P  +LYY+  G+LT  V+ +   G+  +T +  +P+G  F+YEIRYE + LSVS+N G  +  +T+DL+AP   FKVGNYNQG++PS V  +A+ + H
Sbjct:   11 IILLGCAISRATAALDPTCAPGGNFDLSKWNLQLPIGSTGS-PTTIKSTD-LQGCSGYQDPGHKYFFTES-------GDGALVMQVPGSPSSSDCVTTKNSLHCRTELRESNPS-SWDPNAAKNRLKATVAVTVADDSKRGTVVGQIHIDDSISTKPVCELYYNAQGVLTMGVEKTRAGGDSNFTTIATVPVGTTFSYEIRYETNVLSVSVNGGAMKVLETFDLDAPKSYFKVGNYNQGNSPSDVHVFAISVEH 254          
BLAST of mRNA_P-canaliculata_contig10190.276.1 vs. uniprot
Match: A0A6A5V867_9PLEO (Alginate lyase 2 (Fragment) n=1 Tax=Bimuria novae-zelandiae CBS 107.79 TaxID=1447943 RepID=A0A6A5V867_9PLEO)

HSP 1 Score: 196 bits (497), Expect = 8.930e-57
Identity = 108/236 (45.76%), Postives = 145/236 (61.44%), Query Frame = 1
Query:  346 CAPGGILDLSIYELHLPTYSGGEFDIDIEREDKIAGCNGYSDKNFFAGESSGCSSGTGKA--YVQMDVCGSPSSCDCDTTGNSDHCRTELREVLPTREWDPKGPVNRLRATVRVMAADNGNRGTIIGQIHVNTDDVSAPAAKLYYSESGMLTFDVKTSIDDGEDMYTELGVIPLGEKFTYEIRYENDELSVSINDGEFQKFDTYDLNAPPCDFKVGNYNQGDTPSSVRFYALEISH 1047
            CAPGG  DL+ ++L LPT +  + D  I+   K+AGC+GY+DK+ F          T KA   + + VCGS SSC C TT NS HCRTELRE  P   W P   VNRLRA+++V+ AD+   GT++GQIHV+ +    P  +L+  + G++T  V+   D+    YT++G + +GEK+ YEIRYE   LSVSIN G  +K  T  L  P   FK GNYNQGD+ S V FY ++I H
Sbjct:    5 CAPGGNFDLTKFKLQLPTGTSNKPD-SIDGS-KLAGCSGYTDKSVFH---------TNKADGALVLKVCGSSSSCGCVTTKNSKHCRTELRESKPA-SWSPHASVNRLRASLKVVKADDSPHGTVVGQIHVDEEVSKKPVCELFVDQKGVVTMGVEQIPDEASLKYTKVGKVKIGEKWDYEIRYEKGALSVSINGGAMKKLSTGQLTGPASYFKAGNYNQGDSESEVHFYIIDIQH 228          
BLAST of mRNA_P-canaliculata_contig10190.276.1 vs. uniprot
Match: A0A5N7CBV1_PETAA (Alginate lyase 2 n=3 Tax=Aspergillus TaxID=5052 RepID=A0A5N7CBV1_PETAA)

HSP 1 Score: 195 bits (495), Expect = 3.810e-56
Identity = 110/239 (46.03%), Postives = 141/239 (59.00%), Query Frame = 1
Query:  346 CAPGGILDLSIYELHLPTYSGGEFDIDIEREDKIAGCNGYSDKN-FFAGESSGCSSGTGKAYVQMDVCGSPSSCDCDTTGNSDHCRTELREV----LPTREWDPKGPVNRLRATVRVMAADNGNRGTIIGQIHVNTDDVSAPAAKLYYSESGMLTFDVKTSIDDGEDMYTELGVIPLGEKFTYEIRYENDELSVSINDGEFQKFDTYDLNAPPCDFKVGNYNQGDTPSSVRFYALEISH 1047
            CAPGG  DLS + L LPT   G          K+ GC GY D + F+  +  G         + M V GSPSS  C TT NS HCRTELRE+         W P    NRL ATV V   D+G+ GT+IGQIH++    + P  +LYYS  G L   V+ +   G+ ++T++G  P+G+KF+YEIRYE+DELSVSI+ G  QK DTY+L++P   FK GNYNQGD+ S V FY L + H
Sbjct:   25 CAPGGNFDLSYWNLQLPTGESGH--PTTITASKLKGCKGYQDSSVFYTDDKDGA--------LVMKVPGSPSSGACVTTPNSRHCRTELRELNSDGSSKASWSPSASKNRLSATVTVPKPDDGSHGTVIGQIHIDDTISTKPVCELYYSTEGDLVMGVEKTRKGGKSIFTKVGNAPVGKKFSYEIRYESDELSVSIDGGSPQKLDTYELDSPKSYFKAGNYNQGDSASEVHFYELNVQH 253          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10190.276.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5N7BJ63_9EURO4.380e-6246.30Alginate lyase 2 n=1 Tax=Aspergillus bertholletiae... [more]
A0A4S3JMN1_9EURO5.530e-5944.49Alginate_lyase2 domain-containing protein n=2 Tax=... [more]
B8NU59_ASPFN8.280e-5944.32Alginate_lyase2 domain-containing protein n=18 Tax... [more]
S3DSQ4_GLAL29.410e-5944.44Concanavalin A-like lectins/glucanase n=1 Tax=Glar... [more]
A0A0L1J0H4_ASPNO2.320e-5844.62Alginate_lyase2 domain-containing protein n=2 Tax=... [more]
A0A0F4YMS4_TALEM6.470e-5843.92Alginate lyase n=1 Tax=Rasamsonia emersonii CBS 39... [more]
V5I036_BYSSN7.360e-5844.02Alginate_lyase2 domain-containing protein n=2 Tax=... [more]
A0A370U1L9_9HELO2.540e-5743.31Alginate_lyase2 domain-containing protein n=1 Tax=... [more]
A0A6A5V867_9PLEO8.930e-5745.76Alginate lyase 2 (Fragment) n=1 Tax=Bimuria novae-... [more]
A0A5N7CBV1_PETAA3.810e-5646.03Alginate lyase 2 n=3 Tax=Aspergillus TaxID=5052 Re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10190contigP-canaliculata_contig10190:3905..5268 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score207.2
Seed ortholog evalue9e-51
Seed eggNOG ortholog5059.CADAFLAP00011469
EggNOG free text desc.Alginate lyase
EggNOG OGs20HYW@147545,28P14@1,2QVMP@2759,3AEZZ@33154,3PAXK@4751,3R0WN@4890,3S9DM@5042
COG Functional cat.G
Best tax levelEurotiales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons2
Model size1289
Cds size774
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10190.276.1prot_P-canaliculata_contig10190.276.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig10190 4144..4992 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815591.0186305-UTR-P-canaliculata_contig10190:3904..41431622815591.0186305-UTR-P-canaliculata_contig10190:3904..4143Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10190 3905..4143 -
1693494154.3205245-UTR-P-canaliculata_contig10190:3904..41431693494154.3205245-UTR-P-canaliculata_contig10190:3904..4143Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10190 3905..4143 -
1622815591.059342-UTR-P-canaliculata_contig10190:4992..52681622815591.059342-UTR-P-canaliculata_contig10190:4992..5268Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10190 4993..5268 -
1693494154.349479-UTR-P-canaliculata_contig10190:4992..52681693494154.349479-UTR-P-canaliculata_contig10190:4992..5268Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10190 4993..5268 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815591.032019-CDS-P-canaliculata_contig10190:4143..42121622815591.032019-CDS-P-canaliculata_contig10190:4143..4212Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10190 4144..4212 -
1693494154.3321576-CDS-P-canaliculata_contig10190:4143..42121693494154.3321576-CDS-P-canaliculata_contig10190:4143..4212Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10190 4144..4212 -
1622815591.0446029-CDS-P-canaliculata_contig10190:4287..49921622815591.0446029-CDS-P-canaliculata_contig10190:4287..4992Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10190 4288..4992 -
1693494154.3411558-CDS-P-canaliculata_contig10190:4287..49921693494154.3411558-CDS-P-canaliculata_contig10190:4287..4992Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10190 4288..4992 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig10190.276.1

>prot_P-canaliculata_contig10190.276.1 ID=prot_P-canaliculata_contig10190.276.1|Name=mRNA_P-canaliculata_contig10190.276.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=258bp
MHRTGLVALVASLAHLSLVAGAGCAPGGILDLSIYELHLPTYSGGEFDID
IEREDKIAGCNGYSDKNFFAGESSGCSSGTGKAYVQMDVCGSPSSCDCDT
TGNSDHCRTELREVLPTREWDPKGPVNRLRATVRVMAADNGNRGTIIGQI
HVNTDDVSAPAAKLYYSESGMLTFDVKTSIDDGEDMYTELGVIPLGEKFT
YEIRYENDELSVSINDGEFQKFDTYDLNAPPCDFKVGNYNQGDTPSSVRF
YALEISH*
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mRNA from alignment at P-canaliculata_contig10190:3905..5268-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10190.276.1 ID=mRNA_P-canaliculata_contig10190.276.1|Name=mRNA_P-canaliculata_contig10190.276.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=1364bp|location=Sequence derived from alignment at P-canaliculata_contig10190:3905..5268- (Pelvetia canaliculata dioecious)
GTTTCATTAAACGCCCCTCACCAGGGGGCGCGATCGAGACCAACCCGGAT AGTGCTGGCTTGCCGCGGTCATTTCCGGCCAGGAGGGGCTTCAAAACTTC AAAAGCCGGCCTATTCCTCTCATGTTTCCCTCTTCAGTCCTTCATTGCAA CCCATCATCACTTCACCCCATCACCACTTCACCCCATCACCACTTCACCT CACCACCGCTTCAACTTCCATTCTTTGCACCCCATCATCAAGTCGTCCAC CGCAACACACCCAAACCGACCCAACCATGCATCGCACCGGTCTCGTCGCG CTAGTCGCCTCCCTTGCCCACCTCTCGCTCGTCGCGGGCGCAGGCTGCGC TCCCGGAGGGATTCTGGACCTCAGCATATATGAGCTCCATCTGCCTACCT ACTCGGGCGGCGAGTTCGACATCGACATTGAACGGGAAGACAAGATCGCC GGCTGCAACGGCTATTCCGACAAGAACTTCTTCGCCGGCGAATCTTCGGG CTGTTCCAGCGGGACTGGCAAGGCCTACGTTCAGATGGACGTCTGCGGCT CCCCCTCCTCGTGCGACTGCGACACCACGGGTAACAGCGACCACTGCCGC ACGGAGCTGCGCGAGGTGTTGCCAACAAGGGAGTGGGACCCGAAGGGTCC GGTCAACCGCCTCAGAGCGACGGTGCGAGTCATGGCCGCCGACAACGGAA ACCGCGGCACCATCATCGGGCAGATCCACGTGAACACTGACGACGTGTCG GCGCCGGCTGCTAAGCTGTACTACTCGGAGTCTGGCATGTTGACGTTTGA CGTCAAGACATCGATCGACGACGGCGAAGATATGTACACGGAATTGGGGG TGATCCCGCTGGGGGAGAAGTTCACGTATGAGATTCGTTACGAGAACGAC GAGCTGAGCGTGAGCATCAACGATGGGGAGTTTCAGAAGTTCGACACATA CGACCTTAACGCTCCCCCTTGCGACTTCAAGGTAAGTCGCCCCCCCTCCC CCCCTTTGTCGCAGACCGCTCTCGTCGCATCGGGGCCCACGCTGATGTGT CTACAGGTTGGCAACTACAACCAGGGAGACACCCCGTCGTCGGTGCGCTT CTACGCTCTCGAAATCTCCCATTAAGGTTTGGGGATGATGACGCTTTGGG CTGGTGCCTGGCTTGGGGTTGGTGTCTGGCAGGCCAGTGCGGTGTTGCGT GAAGCTGGACTTCCCGCCGACTTGGCGAGGGGACCGCACAGCCTTTGAGT CGAGCAAGATCGGTACTATCTTCAGTACCGTGTACATTCCCTTCTTGAAT GCTAGCCCCCGCGCTCTGACTGCGCATGCTCTGTACATATGAACATTACA ATGTTTCAACAGCC
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Coding sequence (CDS) from alignment at P-canaliculata_contig10190:3905..5268-

>mRNA_P-canaliculata_contig10190.276.1 ID=mRNA_P-canaliculata_contig10190.276.1|Name=mRNA_P-canaliculata_contig10190.276.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1548bp|location=Sequence derived from alignment at P-canaliculata_contig10190:3905..5268- (Pelvetia canaliculata dioecious)
ATGCATCGCACCGGTCTCGTCGCGCTAGTCGCCTCCCTTGCCCACCTCTC
GCTCGTCGCGGGCGCAGGCTGCGCTCCCGGAGGGATTCTGGACCTCAGCA
TATATGAGCTCCATCTGCCTACCTACTCGGGCGGCGAGTTCGACATCGAC
ATTGAACGGGAAGACAAGATCGCCGGCTGCAACGGCTATTCCGACAAGAA
CTTCTTCGCCGGCGAATCTTCGGGCTGTTCCAGCGGGACTGGCAAGGCCT
ACGTTCAGATGGACGTCTGCGGCTCCCCCTCCTCGTGCGACTGCGACACC
ACGGGTAACAGCGACCACTGCCGCACGGAGCTGCGCGAGGTGTTGCCAAC
AAGGGAGTGGGACCCGAAGGGTCCGGTCAACCGCCTCAGAGCGACGGTGC
GAGTCATGGCCGCCGACAACGGAAACCGCGGCACCATCATCGGGCAGATC
CACGTGAACACTGACGACGTGTCGGCGCCGGCTGCTAAGCTGTACTACTC
GGAGTCTGGCATGTTGACGTTTGACGTCAAGACATCGATCGACGACGGCG
AAGATATGTACACGGAATTGGGGGTGATCCCGCTGGGGGAGAAGTTCACG
TATGAGATTCGTTACGAGAACGACGAGCTGAGCGTGAGCATCAACGATGG
GGAGTTTCAGAAGTTCGACACATACGACCTTAACGCTCCCCCTTGCGACT
TCAAGATGCATCGCACCGGTCTCGTCGCGCTAGTCGCCTCCCTTGCCCAC
CTCTCGCTCGTCGCGGGCGCAGGCTGCGCTCCCGGAGGGATTCTGGACCT
CAGCATATATGAGCTCCATCTGCCTACCTACTCGGGCGGCGAGTTCGACA
TCGACATTGAACGGGAAGACAAGATCGCCGGCTGCAACGGCTATTCCGAC
AAGAACTTCTTCGCCGGCGAATCTTCGGGCTGTTCCAGCGGGACTGGCAA
GGCCTACGTTCAGATGGACGTCTGCGGCTCCCCCTCCTCGTGCGACTGCG
ACACCACGGGTAACAGCGACCACTGCCGCACGGAGCTGCGCGAGGTGTTG
CCAACAAGGGAGTGGGACCCGAAGGGTCCGGTCAACCGCCTCAGAGCGAC
GGTGCGAGTCATGGCCGCCGACAACGGAAACCGCGGCACCATCATCGGGC
AGATCCACGTGAACACTGACGACGTGTCGGCGCCGGCTGCTAAGCTGTAC
TACTCGGAGTCTGGCATGTTGACGTTTGACGTCAAGACATCGATCGACGA
CGGCGAAGATATGTACACGGAATTGGGGGTGATCCCGCTGGGGGAGAAGT
TCACGTATGAGATTCGTTACGAGAACGACGAGCTGAGCGTGAGCATCAAC
GATGGGGAGTTTCAGAAGTTCGACACATACGACCTTAACGCTCCCCCTTG
CGACTTCAAGGTTGGCAACTACAACCAGGGAGACACCCCGTCGTCGGTGC
GCTTCTACGCTCTCGAAATCTCCCATTAAGTTGGCAACTACAACCAGGGA
GACACCCCGTCGTCGGTGCGCTTCTACGCTCTCGAAATCTCCCATTAA
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