mRNA_P-canaliculata_contig10190.278.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig10190.278.1
Unique NamemRNA_P-canaliculata_contig10190.278.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10190.278.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10190contigP-canaliculata_contig10190:8092..8423 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size334
Cds size309
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815590.9159153-UTR-P-canaliculata_contig10190:8091..81141622815590.9159153-UTR-P-canaliculata_contig10190:8091..8114Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10190 8092..8114 +
1693494154.2787766-UTR-P-canaliculata_contig10190:8091..81141693494154.2787766-UTR-P-canaliculata_contig10190:8091..8114Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10190 8092..8114 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815590.9334195-CDS-P-canaliculata_contig10190:8114..84231622815590.9334195-CDS-P-canaliculata_contig10190:8114..8423Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10190 8115..8423 +
1693494154.288066-CDS-P-canaliculata_contig10190:8114..84231693494154.288066-CDS-P-canaliculata_contig10190:8114..8423Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10190 8115..8423 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10190.278.1prot_P-canaliculata_contig10190.278.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig10190 8115..8423 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig10190.278.1

>prot_P-canaliculata_contig10190.278.1 ID=prot_P-canaliculata_contig10190.278.1|Name=mRNA_P-canaliculata_contig10190.278.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=103bp
MESGTGQTGASRADDANAASKRKHWPSSGPLEGRSAGRKHNKSDEELPHR
MTTATSSSTKDQGGASDKAAAPLLPPCSTNHKLLHPNRRPSQSRPRKAES
IAP
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mRNA from alignment at P-canaliculata_contig10190:8092..8423+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10190.278.1 ID=mRNA_P-canaliculata_contig10190.278.1|Name=mRNA_P-canaliculata_contig10190.278.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=332bp|location=Sequence derived from alignment at P-canaliculata_contig10190:8092..8423+ (Pelvetia canaliculata dioecious)
GTTCCGGTTTGGGATGTGGGAAAATGGAGTCTGGTACTGGTCAAACGGGA
GCTTCTCGAGCCGACGATGCGAACGCCGCGAGTAAGCGCAAGCATTGGCC
TTCCTCGGGCCCGCTGGAAGGTCGGTCAGCAGGTCGAAAGCATAACAAAT
CAGACGAAGAACTACCACATCGTATGACCACAGCTACATCCTCGAGTACC
AAAGACCAAGGCGGCGCAAGCGACAAAGCCGCCGCGCCACTCCTGCCTCC
TTGCAGCACTAACCACAAGTTGCTACATCCCAACCGACGGCCAAGCCAAT
CCAGGCCCAGAAAGGCCGAATCCATCGCCCCC
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Coding sequence (CDS) from alignment at P-canaliculata_contig10190:8092..8423+

>mRNA_P-canaliculata_contig10190.278.1 ID=mRNA_P-canaliculata_contig10190.278.1|Name=mRNA_P-canaliculata_contig10190.278.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=618bp|location=Sequence derived from alignment at P-canaliculata_contig10190:8092..8423+ (Pelvetia canaliculata dioecious)
ATGGAGTCTGGTACTGGTCAAACGGGAGCTTCTCGAGCCGACGATGCGAA
CGCCGCGAGTAAGCGCAAGCATTGGCCTTCCTCGGGCCCGCTGGAAGGTC
GGTCAGCAGGTCGAAAGCATAACAAATCAGACGAAGAACTACCACATCGT
ATGACCACAGCTACATCCTCGAGTACCAAAGACCAAGGCGGCGCAAGCGA
CAAAGCCGCCGCGCCACTCCTGCCTCCTTGCAGCACTAACCACAAGTTGC
TACATCCCAACCGACGGCCAAGCCAATCCAGGCCCAGAAAGGCCGAATCC
ATCGCCCCCATGGAGTCTGGTACTGGTCAAACGGGAGCTTCTCGAGCCGA
CGATGCGAACGCCGCGAGTAAGCGCAAGCATTGGCCTTCCTCGGGCCCGC
TGGAAGGTCGGTCAGCAGGTCGAAAGCATAACAAATCAGACGAAGAACTA
CCACATCGTATGACCACAGCTACATCCTCGAGTACCAAAGACCAAGGCGG
CGCAAGCGACAAAGCCGCCGCGCCACTCCTGCCTCCTTGCAGCACTAACC
ACAAGTTGCTACATCCCAACCGACGGCCAAGCCAATCCAGGCCCAGAAAG
GCCGAATCCATCGCCCCC
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