mRNA_P-canaliculata_contig10188.273.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig10188.273.1
Unique NamemRNA_P-canaliculata_contig10188.273.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig10188.273.1 vs. uniprot
Match: D8LRN1_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D8LRN1_ECTSI)

HSP 1 Score: 196 bits (499), Expect = 3.170e-60
Identity = 92/151 (60.93%), Postives = 109/151 (72.19%), Query Frame = 1
Query:    1 LTVALNAAQYDGSELCGACIEGEGSGNGAGSNPITGSFKAYVMDKCPECATGDLDFSKSGDGRWDISWKFVECPGSDTPSFIFEGSHEYYWKIQPRGTKTPVVELTVDGASGSKTDDNFFEVPGAPYPLYGAQKVKTTTMMGKTATQEVSL 453
            + VALNA QY  S +CGAC+EG  SG+G+G+NPI  +FKA++ DKCPEC  GDLDFS SGDGRWDI WKFV CPG +T SF+   ++ YYWK+QPRGT TPVV LTVDG S  +T DN FEV        GAQ V TTT+ G T T EVS+
Sbjct:  137 IPVALNAEQYGDSLMCGACVEGTASGSGSGNNPIPSTFKAFITDKCPECQKGDLDFSMSGDGRWDIEWKFVACPGEET-SFVSPSANPYYWKVQPRGTTTPVVSLTVDGQSAMRTTDNHFEVHNDGAAWSGAQTVVTTTVSGVTETAEVSV 286          
BLAST of mRNA_P-canaliculata_contig10188.273.1 vs. uniprot
Match: D8LHU1_ECTSI (Putative lipoprotein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHU1_ECTSI)

HSP 1 Score: 183 bits (464), Expect = 9.020e-56
Identity = 81/151 (53.64%), Postives = 106/151 (70.20%), Query Frame = 1
Query:    1 LTVALNAAQYDGSELCGACIEGEGSGNGAGSNPITGSFKAYVMDKCPECATGDLDFSKSGDGRWDISWKFVECPGSDTPSFIFEGSHEYYWKIQPRGTKTPVVELTVDGASGSKTDDNFFEVPGAPYPLYGAQKVKTTTMMGKTATQEVSL 453
            + VALN  QY  S +CGACIEGEG G G G +P+ G+FKAYV D+CPEC  GDLDF+  GDGRWDISW FV C G    +F+FEGS+E+YWKIQPRG ++PV  L ++G    +++DNFF + G P+   G Q+V T T++ K   Q V++
Sbjct:   72 IPVALNDEQYADSYMCGACIEGEGFGEGEGRDPVEGAFKAYVTDRCPECLFGDLDFAADGDGRWDISWHFVPCEGGSDQTFLFEGSNEFYWKIQPRGGRSPVERLWINGDEAERSEDNFFILEGGPFD--GEQEVHTKTVLNKRRRQSVAM 220          
BLAST of mRNA_P-canaliculata_contig10188.273.1 vs. uniprot
Match: D8LGP4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGP4_ECTSI)

HSP 1 Score: 179 bits (453), Expect = 3.770e-51
Identity = 85/151 (56.29%), Postives = 104/151 (68.87%), Query Frame = 1
Query:    7 VALNAAQYDGSELCGACIEGEGSGNGAGSNPITGSFKAYVMDKCPECATGDLDFSKSGDGRWDISWKFVECPGSDTPSFIFEGSHEYYWKIQPRGTKTPVVELTVDGASGSKTDDNFFEV--PGAPYPLYGAQKVKTTTMMGKTATQEVSL 453
            VALN  QY  S +CGAC+EGEG+G G+GS+P+ G+FK ++MDKCPEC+ GDLDF    DGRWDI WKFVECP  +  SF  E   EYYWKIQPRGT TPV  LT+ G + ++TDDN FE+  P    P Y  Q V TTT+ G     E+S+
Sbjct:  346 VALNEPQYGDSLMCGACVEGEGTGGGSGSDPV-GTFKGFIMDKCPECSEGDLDFGTGKDGRWDIKWKFVECPAGEEVSFKVEQKTEYYWKIQPRGTATPVESLTIGGRAAARTDDNHFELEHPSGD-PWYEPQMVVTTTVGGVVEETEMSV 494          
BLAST of mRNA_P-canaliculata_contig10188.273.1 vs. uniprot
Match: A0A6H5KBW3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBW3_9PHAE)

HSP 1 Score: 170 bits (431), Expect = 1.190e-47
Identity = 82/150 (54.67%), Postives = 102/150 (68.00%), Query Frame = 1
Query:    7 VALNAAQYDGSELCGACIEGEGSGNGAGSNPITGSFKAYVMDKCPECATGDLDFSKSGDGRWDISWKFVECPGSDTPSFIFEGSHEYYWKIQPRGTKTPVVELTVDGASGSKTDDNFFEVPG-APYPLYGAQKVKTTTMMGKTATQEVSL 453
            VALNAAQY  S +CG+C+EGEG+G G G NPI G+FK ++MDKCPEC  GDLDF    DGRWDI W+FV CPG +    + E +  YYWKIQPRGT TPV  LT+ G + ++TDDN FE+   +  P Y  Q V TTT+ G     E+S+
Sbjct:  383 VALNAAQYGDSLMCGSCVEGEGTGGGGGDNPI-GTFKGFIMDKCPECHEGDLDFGTGLDGRWDIEWRFVACPGEEVSFKVVEMT-PYYWKIQPRGTATPVESLTIGGRAAARTDDNHFELEHPSGNPWYEPQMVVTTTVGGVVEETEMSV 530          
BLAST of mRNA_P-canaliculata_contig10188.273.1 vs. uniprot
Match: A0A2V3ISL2_9FLOR (Expansin-YoaJ n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISL2_9FLOR)

HSP 1 Score: 161 bits (407), Expect = 2.370e-46
Identity = 72/122 (59.02%), Postives = 90/122 (73.77%), Query Frame = 1
Query:    1 LTVALNAAQYDGSELCGACIEGEGSGNGAGSNPITGSFKAYVMDKCPECATGDLDFSKSGDGRWDISWKFVECPGSDTPSFIFEGSHEYYWKIQPRGTKTPVVELTVDGASGSKTDDNFFEV 366
            L VA+N AQY+ S  CGAC++  G G G+G+NPI G+FKAYV D+CPEC  GD+D SK GDGRW + WKF+ CPG +   F+FEGS+ YY K+QPRG KTPV  L+V G  G+KT DNF+ V
Sbjct:   58 LPVAINNAQYENSASCGACLQVTGYGQGSGANPIRGTFKAYVHDRCPECKYGDIDLSKGGDGRWRVHWKFIPCPG-EFVFFLFEGSNRYYLKLQPRGLKTPVSALSVGGQWGTKTQDNFYIV 178          
BLAST of mRNA_P-canaliculata_contig10188.273.1 vs. uniprot
Match: F2Z7J0_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis andersonii TaxID=408198 RepID=F2Z7J0_9FLOR)

HSP 1 Score: 159 bits (403), Expect = 8.980e-46
Identity = 71/130 (54.62%), Postives = 94/130 (72.31%), Query Frame = 1
Query:    7 VALNAAQYDGSELCGACIEGEGSGNGAGSNPITGSFKAYVMDKCPECATGDLDFSKSGDGRWDISWKFVECPGSDTPSFIFEGSHEYYWKIQPRGTKTPVVELTVDGASGSKTDDNFFEVP---GAPYPL 387
            VA+N AQY+ S+ CGAC+   G G G+G+NP+ G+FKAYV D+CPEC  GD+D SKSGDGRW + W+F+ CPG +   F+FEGS+ +Y K+QPRG KTPV   +V+G  G+KT DNF+ +    G  YPL
Sbjct:   55 VAINNAQYEESKSCGACLLVTGYGQGSGANPVVGTFKAYVHDRCPECKYGDIDLSKSGDGRWKVQWRFIPCPG-EWVFFLFEGSNRFYLKLQPRGLKTPVTYFSVNGQQGTKTQDNFYILQNGGGFRYPL 183          
BLAST of mRNA_P-canaliculata_contig10188.273.1 vs. uniprot
Match: A0A1X6NJE1_PORUM (Uncharacterized protein (Fragment) n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NJE1_PORUM)

HSP 1 Score: 153 bits (386), Expect = 4.850e-44
Identity = 72/138 (52.17%), Postives = 90/138 (65.22%), Query Frame = 1
Query:    7 VALNAAQYDGSELCGACIEGEGSGNGAGSNPITGSFKAYVMDKCPECATGDLDFSKSGDGRWDISWKFVECP-GSDTPSFIFEGSHEYYWKIQPRGTKTPVVELTVDGASGSKTDDNFFEVPGAPYPLYGAQKVKTTT 417
            VA++ A Y GS  CGAC+   GSG+GAG+NPITG+F AYVMD+CPECA GDLD +  GDGRW +SW  V CP     P F+ EGS+ +Y K+Q RG   P   ++V GA+ ++T DNFF V  A  PL     V  TT
Sbjct:   78 VAVSTADYAGSAACGACLRVTGSGDGAGANPITGTFSAYVMDRCPECAAGDLDLATPGDGRWAVSWTVVPCPTAGGAPEFLLEGSNPHYLKVQVRGLPAPAASVSVGGAACARTQDNFFIVATAGPPLEPPLTVTGTT 215          
BLAST of mRNA_P-canaliculata_contig10188.273.1 vs. uniprot
Match: A0A2P6NBD6_9EUKA (Endochitinase-like n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NBD6_9EUKA)

HSP 1 Score: 140 bits (354), Expect = 7.520e-36
Identity = 67/158 (42.41%), Postives = 101/158 (63.92%), Query Frame = 1
Query:    1 LTVALNAAQYDGSELCGACIEGEGSGNGAGSNPITGSFKAYVMDKCPECATGDLDFSKSGDGRWDISWKFVECP-GSDTPSFIFEGSHEYYWKIQPRGTKTPVVELTVDGASGS------KTDDNFFEVP-GAPYPLYGAQKVKTTTMMGKTATQEVS 450
            ++VA+ +A + GS  CG+CI+  GSG GAGSNP+ G+F A+V D+CP C  G LDF+K+GDG WDISWK V+CP G+    + F+GS+E+Y K+Q R  +TP+  +++   +        +T DNFFE+P G P P+     ++ T+  G+     +S
Sbjct:  368 VSVAMVSAYWFGSAACGSCIQITGSGKGAGSNPVKGNFTAFVNDQCPTCVPGGLDFAKNGDGLWDISWKVVDCPVGNSGIYYAFQGSNEWYMKVQARNHRTPLNFISIQDPNTKQYRKMKRTGDNFFELPDGFPVPVKYPAPIQLTSFSGEVLNDAIS 525          
BLAST of mRNA_P-canaliculata_contig10188.273.1 vs. uniprot
Match: A0A2P6NBF0_9EUKA (MAP/microtubule affinity-regulating kinase 3-like n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NBF0_9EUKA)

HSP 1 Score: 140 bits (354), Expect = 7.700e-36
Identity = 67/158 (42.41%), Postives = 101/158 (63.92%), Query Frame = 1
Query:    1 LTVALNAAQYDGSELCGACIEGEGSGNGAGSNPITGSFKAYVMDKCPECATGDLDFSKSGDGRWDISWKFVECP-GSDTPSFIFEGSHEYYWKIQPRGTKTPVVELTVDGASGS------KTDDNFFEVP-GAPYPLYGAQKVKTTTMMGKTATQEVS 450
            ++VA+ +A + GS  CG+CI+  GSG GAGSNP+ G+F A+V D+CP C  G LDF+K+GDG WDISWK V+CP G+    + F+GS+E+Y K+Q R  +TP+  +++   +        +T DNFFE+P G P P+     ++ T+  G+     +S
Sbjct:  761 VSVAMVSAYWFGSAACGSCIQITGSGKGAGSNPVKGNFTAFVNDQCPTCVPGGLDFAKNGDGLWDISWKVVDCPVGNSGIYYAFQGSNEWYMKVQARNHRTPLNFISIQDPNTKQYRKMKRTGDNFFELPDGFPVPVKYPAPIQLTSFSGEVLNDAIS 918          
BLAST of mRNA_P-canaliculata_contig10188.273.1 vs. uniprot
Match: A0A2V0PJ07_9CHLO (Uncharacterized protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PJ07_9CHLO)

HSP 1 Score: 125 bits (313), Expect = 9.110e-33
Identity = 58/151 (38.41%), Postives = 95/151 (62.91%), Query Frame = 1
Query:    7 VALNAAQYDGSELCGACIEGEGSGNGAGSNPITGSFK-AYVMDKCPECATGDLDFSKSGDGRWDISWKFVECP-GSDTPSFIFEGSHEYYWKIQPRGTKTPVVELTV--DGA--SGSKTDDNFFEVPGAPYPLYGA---QKVKTTTMMGKT 432
            +A+NAAQY G+ +CG C+   G+G GAG NPI+  ++  ++ D+CPECA G +D  K+GDGRW + W+ V+CP GS   ++ ++G ++YY K+Q    + P+ +L +  +GA      T DN+FEV G     +G+     ++ T+++G T
Sbjct:   62 LAINAAQYTGTSICGLCVRFRGTGGGAGGNPISSDWQPGFICDECPECAFGSIDLQKNGDGRWKVEWEPVQCPVGSSNFAYGYQGGNDYYKKVQVANARAPISKLEIKRNGAWQQAVATIDNYFEVHGYVADFWGSGGCASIRVTSILGDT 212          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10188.273.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRN1_ECTSI3.170e-6060.93Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2... [more]
D8LHU1_ECTSI9.020e-5653.64Putative lipoprotein n=2 Tax=Ectocarpus TaxID=2879... [more]
D8LGP4_ECTSI3.770e-5156.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KBW3_9PHAE1.190e-4754.67Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A2V3ISL2_9FLOR2.370e-4659.02Expansin-YoaJ n=1 Tax=Gracilariopsis chorda TaxID=... [more]
F2Z7J0_9FLOR8.980e-4654.62Uncharacterized protein n=1 Tax=Gracilariopsis and... [more]
A0A1X6NJE1_PORUM4.850e-4452.17Uncharacterized protein (Fragment) n=1 Tax=Porphyr... [more]
A0A2P6NBD6_9EUKA7.520e-3642.41Endochitinase-like n=1 Tax=Planoprotostelium fungi... [more]
A0A2P6NBF0_9EUKA7.700e-3642.41MAP/microtubule affinity-regulating kinase 3-like ... [more]
A0A2V0PJ07_9CHLO9.110e-3338.41Uncharacterized protein n=1 Tax=Raphidocelis subca... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10188contigP-canaliculata_contig10188:10900..11707 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score196.8
Seed ortholog evalue7.2e-48
Seed eggNOG ortholog2880.D8LRN1
KEGG koko:K20628
EggNOG OGs2D16Q@1,2SGXE@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categoryother localisation
Exons2
Model size456
Cds size456
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815590.790895-CDS-P-canaliculata_contig10188:10899..112381622815590.790895-CDS-P-canaliculata_contig10188:10899..11238Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10188 10900..11238 -
1693494154.2256694-CDS-P-canaliculata_contig10188:10899..112381693494154.2256694-CDS-P-canaliculata_contig10188:10899..11238Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10188 10900..11238 -
1622815590.8036425-CDS-P-canaliculata_contig10188:11590..117071622815590.8036425-CDS-P-canaliculata_contig10188:11590..11707Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10188 11591..11707 -
1693494154.2420545-CDS-P-canaliculata_contig10188:11590..117071693494154.2420545-CDS-P-canaliculata_contig10188:11590..11707Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10188 11591..11707 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10188.273.1prot_P-canaliculata_contig10188.273.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig10188 10900..11707 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig10188.273.1

>prot_P-canaliculata_contig10188.273.1 ID=prot_P-canaliculata_contig10188.273.1|Name=mRNA_P-canaliculata_contig10188.273.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=152bp
LTVALNAAQYDGSELCGACIEGEGSGNGAGSNPITGSFKAYVMDKCPECA
TGDLDFSKSGDGRWDISWKFVECPGSDTPSFIFEGSHEYYWKIQPRGTKT
PVVELTVDGASGSKTDDNFFEVPGAPYPLYGAQKVKTTTMMGKTATQEVS
L*
back to top

mRNA from alignment at P-canaliculata_contig10188:10900..11707-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10188.273.1 ID=mRNA_P-canaliculata_contig10188.273.1|Name=mRNA_P-canaliculata_contig10188.273.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=808bp|location=Sequence derived from alignment at P-canaliculata_contig10188:10900..11707- (Pelvetia canaliculata dioecious)
CTCACAGTTGCGCTGAACGCCGCCCAGTACGATGGTTCGGAGTTGTGCGG CGCGTGTATCGAAGGCGAAGGATCTGGAAATGGCGCAGGCAGTAATCCCA TCACTGGATCCTTCAAGGTGCGCCATGGAAGCGTCGTCGTCCGTGATCTG TTGCGATTCGGCGGACATTGTATTTTCACTTGATATTTATTGGGGAGGAT CGTGTCTCTGCTTGTTTCTAGCCATGAACTTGTTCATCTGGGCGTCTTTC CCCCTCGGCAATCTCTTTCAAGCGAGTCCGAAACGTGGCAAAGCAAGCAT GAGTGAGTGTATATGGTGGTTGTTTGAGAACCTCAGCCGAATCGTCGTAG AGAAGTAAGTACCGCAAATGCTGTACGTGACACAGTCGTCTACCAACATA ATTTGGTTTATCGACCCTACCCAACACGCTCTCTCTTGCCTAAACTATGG CGCGACAACCTCGCTTCAGGCGTACGTGATGGACAAGTGTCCCGAGTGCG CGACTGGTGACCTCGACTTCTCCAAGAGCGGGGATGGCCGTTGGGATATT TCCTGGAAGTTTGTGGAGTGCCCTGGTTCCGACACGCCAAGCTTCATATT CGAGGGGAGCCATGAATACTACTGGAAGATCCAGCCGCGTGGGACTAAGA CTCCCGTGGTGGAGCTGACGGTAGATGGTGCCTCGGGATCTAAAACCGAT GACAACTTCTTTGAGGTCCCTGGCGCTCCGTACCCCCTCTACGGGGCACA GAAGGTGAAGACGACGACCATGATGGGGAAGACAGCGACGCAGGAGGTCT CCTTGTAA
back to top

Coding sequence (CDS) from alignment at P-canaliculata_contig10188:10900..11707-

>mRNA_P-canaliculata_contig10188.273.1 ID=mRNA_P-canaliculata_contig10188.273.1|Name=mRNA_P-canaliculata_contig10188.273.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=912bp|location=Sequence derived from alignment at P-canaliculata_contig10188:10900..11707- (Pelvetia canaliculata dioecious)
CTCACAGTTGCGCTGAACGCCGCCCAGTACGATGGTTCGGAGTTGTGCGG
CGCGTGTATCGAAGGCGAAGGATCTGGAAATGGCGCAGGCAGTAATCCCA
TCACTGGATCCTTCAAGCTCACAGTTGCGCTGAACGCCGCCCAGTACGAT
GGTTCGGAGTTGTGCGGCGCGTGTATCGAAGGCGAAGGATCTGGAAATGG
CGCAGGCAGTAATCCCATCACTGGATCCTTCAAGGCGTACGTGATGGACA
AGTGTCCCGAGTGCGCGACTGGTGACCTCGACTTCTCCAAGAGCGGGGAT
GGCCGTTGGGATATTTCCTGGAAGTTTGTGGAGTGCCCTGGTTCCGACAC
GCCAAGCTTCATATTCGAGGGGAGCCATGAATACTACTGGAAGATCCAGC
CGCGTGGGACTAAGACTCCCGTGGTGGAGCTGACGGTAGATGGTGCCTCG
GGATCTAAAACCGATGACAACTTCTTTGAGGTCCCTGGCGCTCCGTACCC
CCTCTACGGGGCACAGAAGGTGAAGACGACGACCATGATGGGGAAGACAG
CGACGCAGGAGGTCTCCTTGTAAGCGTACGTGATGGACAAGTGTCCCGAG
TGCGCGACTGGTGACCTCGACTTCTCCAAGAGCGGGGATGGCCGTTGGGA
TATTTCCTGGAAGTTTGTGGAGTGCCCTGGTTCCGACACGCCAAGCTTCA
TATTCGAGGGGAGCCATGAATACTACTGGAAGATCCAGCCGCGTGGGACT
AAGACTCCCGTGGTGGAGCTGACGGTAGATGGTGCCTCGGGATCTAAAAC
CGATGACAACTTCTTTGAGGTCCCTGGCGCTCCGTACCCCCTCTACGGGG
CACAGAAGGTGAAGACGACGACCATGATGGGGAAGACAGCGACGCAGGAG
GTCTCCTTGTAA
back to top