mRNA_P-canaliculata_contig101867.271.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig101867.271.1 vs. uniprot
Match: UPI00167BE3AF (hypothetical protein n=1 Tax=Streptomyces aurantiogriseus TaxID=66870 RepID=UPI00167BE3AF) HSP 1 Score: 58.2 bits (139), Expect = 3.910e-7 Identity = 44/112 (39.29%), Postives = 57/112 (50.89%), Query Frame = 1 Query: 121 VEIADAVDIQKLQDEKLDLTGGTMTGDIILAGAPSSALGATPKSFVEE-------------------QDALKVSKAGDVMSGNLDMGGNELVGLPATPSATGATSVEYVDGL 399
V++ D +D L KLDLTGGTM G II +G PS + A K++V+ Q ALKVSKAGD M+G L + GN P +P A + +YVD L
Sbjct: 90 VDLGDQID--SLSTNKLDLTGGTMLGPIITSGVPSVSGEAVNKAYVDSEVSSGDAATFTSAQAYTDAQAALKVSKAGDAMTGPLTLPGN-----PTSP--LHAATKQYVDAL 192 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig101867.271.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig101867.271.1 >prot_P-canaliculata_contig101867.271.1 ID=prot_P-canaliculata_contig101867.271.1|Name=mRNA_P-canaliculata_contig101867.271.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=143bp GFGLPVKTTAERTAYTPSRTGYQVYDTDLGKAFVWVNNAWVEIADAVDIQback to top mRNA from alignment at P-canaliculata_contig101867:110..538- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig101867.271.1 ID=mRNA_P-canaliculata_contig101867.271.1|Name=mRNA_P-canaliculata_contig101867.271.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=429bp|location=Sequence derived from alignment at P-canaliculata_contig101867:110..538- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig101867:110..538- >mRNA_P-canaliculata_contig101867.271.1 ID=mRNA_P-canaliculata_contig101867.271.1|Name=mRNA_P-canaliculata_contig101867.271.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=858bp|location=Sequence derived from alignment at P-canaliculata_contig101867:110..538- (Pelvetia canaliculata dioecious)back to top |