prot_P-canaliculata_contig101692.261.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig101692.261.1
Unique Nameprot_P-canaliculata_contig101692.261.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length333
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig101692.261.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00364LRR_bac_2coord: 50..69
e-value: 90.0
score: 6.4
coord: 73..92
e-value: 24.0
score: 10.8
coord: 4..23
e-value: 28.0
score: 10.2
NoneNo IPR availablePANTHERPTHR16083LEUCINE RICH REPEAT CONTAINING PROTEINcoord: 4..110
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 185..333
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..164
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 165..184
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 2..115
NoneNo IPR availableTMHMMTMhelixcoord: 165..184
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 73..96
e-value: 4.1
score: 16.4
coord: 4..26
e-value: 1.6
score: 17.8
coord: 27..50
e-value: 6.1
score: 15.0
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 29..86
e-value: 5.7E-9
score: 35.6
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 75..97
score: 7.134
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 29..50
score: 5.063
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 52..73
score: 6.557
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 6..27
score: 7.427
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1..152
e-value: 6.3E-27
score: 95.9

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig101692contigP-canaliculata_contig101692:8..1006 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig101692.261.1mRNA_P-canaliculata_contig101692.261.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig101692 8..1006 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig101692.261.1 ID=prot_P-canaliculata_contig101692.261.1|Name=mRNA_P-canaliculata_contig101692.261.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=333bp
IGYLKNLKELYLQQNELEKLPKSFSYLTKLQKINLSLNKFQVFPKTIFNF
KLLEYINVSGNKIKVLPKQIGLLKRLTYLNISENRISTIPTRLYVLRKLK
KANFHFNNNLLSDVIIKEIDEKLGKIKSSPKKKKVKEAPSKTLRKASENL
LEDETKSIKGISGLFIFRDLGLIILIPFLLYLFFKYNENMDLKIEEDKIK
KDKEAYALAVQNMKASKERILEKTKEIYVYTNDTASLKLTIAANAYFSDL
EFNKRYTYMFKRKTKYINKFLNNKSYGYKGVIDKCRKKFSQLWLHDSVIP
NGYAKKFRIVRYYRMNAKERAYNIERDKKRAYY
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf