prot_P-canaliculata_contig10169.260.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig10169.260.1
Unique Nameprot_P-canaliculata_contig10169.260.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length257
Homology
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BLAST of mRNA_P-canaliculata_contig10169.260.1 vs. uniprot
Match: D8LSH3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSH3_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 1.390e-22
Identity = 46/64 (71.88%), Postives = 55/64 (85.94%), Query Frame = 0 
Query:    8 DRAALAVLFRSCHGPRWLRRAGWSAGSDERTGVAWTSDRSRLIKLELGTNRVEGYMPKELGALS 71
            DRAALA+LFRSCHG RWLRRAGW   SD R GVAWT++ +R++KLELG NR+EGY+PKELG +S
Sbjct: 1023 DRAALAILFRSCHGLRWLRRAGWDGDSDGRHGVAWTAENARVLKLELGNNRLEGYIPKELGVMS 1086
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BLAST of mRNA_P-canaliculata_contig10169.260.1 vs. uniprot
Match: A0A6H5L8P8_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8P8_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 6.720e-22
Identity = 44/64 (68.75%), Postives = 55/64 (85.94%), Query Frame = 0 
Query:    8 DRAALAVLFRSCHGPRWLRRAGWSAGSDERTGVAWTSDRSRLIKLELGTNRVEGYMPKELGALS 71
            DRAALA+LF+SCHG RWLRRAGW   SD R GVAWT++ +R++KLELG NR+EGY+P+ELG +S
Sbjct: 1553 DRAALAILFQSCHGLRWLRRAGWDGDSDRRHGVAWTTENARVLKLELGNNRLEGYIPRELGVMS 1616
[Close]
BLAST of mRNA_P-canaliculata_contig10169.260.1 vs. uniprot
Match: A0A6H5KQQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQQ0_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 4.420e-7
Identity = 29/66 (43.94%), Postives = 42/66 (63.64%), Query Frame = 0 
Query:    8 DRAALAVLFRSCHGPRWLRRAGWSAGSDERT--GVAWTSDRSRLIKLELGTNRVEGYMPKELGALS 71
            DR AL  LF S  G  W RR  W+  +D  T  GV   +D+ R++ ++LG+N ++G +PKELGAL+
Sbjct:    5 DRDALVALFCSTGGAGWTRRDNWNTDADRATWFGVK-VNDQGRVVDVDLGSNNLQGPIPKELGALA 69
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10169.260.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LSH3_ECTSI1.390e-2271.88Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5L8P8_9PHAE6.720e-2268.75Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A6H5KQQ0_9PHAE4.420e-743.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 142..166
e-value: 120.0
score: 4.4
coord: 94..118
e-value: 11.0
score: 13.0
coord: 190..214
e-value: 49.0
score: 7.6
coord: 70..93
e-value: 210.0
score: 2.4
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 160..257
e-value: 8.9E-24
score: 85.7
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 4..159
e-value: 8.2E-36
score: 125.2
NoneNo IPR availablePANTHERPTHR27008FAMILY NOT NAMEDcoord: 115..250
NoneNo IPR availablePANTHERPTHR27008:SF193coord: 115..250
NoneNo IPR availablePANTHERPTHR27008:SF193coord: 49..188
NoneNo IPR availablePANTHERPTHR27008FAMILY NOT NAMEDcoord: 49..188
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 23..255

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10169contigP-canaliculata_contig10169:2556..10232 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10169.260.1mRNA_P-canaliculata_contig10169.260.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig10169 2556..10232 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig10169.260.1 ID=prot_P-canaliculata_contig10169.260.1|Name=mRNA_P-canaliculata_contig10169.260.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=257bp
MVPAHVDDRAALAVLFRSCHGPRWLRRAGWSAGSDERTGVAWTSDRSRLI
KLELGTNRVEGYMPKELGALSRLLCLRLDHNHLLGMIPPELGCLTALQQL
ELQGNALTGSIPPELGALVNLQYLGLHENQLLGEIPSELGGLKRLKHFAL
CNNRLVGTIPEELGNLSGLEQMYFNHNHLSGPIPSTIGNLSNLNKLRLES
NQLSGGIPVELGRLTRLQYVNFGFNGAGNCLTGEIPVRAFANMPQLAWLS
ITDNPCL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR032675LRR_dom_sf