mRNA_P-canaliculata_contig10169.260.1 (mRNA) Pelvetia canaliculata dioecious
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig10169.260.1 vs. uniprot
Match: D8LSH3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSH3_ECTSI) HSP 1 Score: 107 bits (266), Expect = 1.390e-22 Identity = 46/64 (71.88%), Postives = 55/64 (85.94%), Query Frame = 1
Query: 22 DRAALAVLFRSCHGPRWLRRAGWSAGSDERTGVAWTSDRSRLIKLELGTNRVEGYMPKELGALS 213
DRAALA+LFRSCHG RWLRRAGW SD R GVAWT++ +R++KLELG NR+EGY+PKELG +S
Sbjct: 1023 DRAALAILFRSCHGLRWLRRAGWDGDSDGRHGVAWTAENARVLKLELGNNRLEGYIPKELGVMS 1086
BLAST of mRNA_P-canaliculata_contig10169.260.1 vs. uniprot
Match: A0A6H5L8P8_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8P8_9PHAE) HSP 1 Score: 105 bits (261), Expect = 6.720e-22 Identity = 44/64 (68.75%), Postives = 55/64 (85.94%), Query Frame = 1
Query: 22 DRAALAVLFRSCHGPRWLRRAGWSAGSDERTGVAWTSDRSRLIKLELGTNRVEGYMPKELGALS 213
DRAALA+LF+SCHG RWLRRAGW SD R GVAWT++ +R++KLELG NR+EGY+P+ELG +S
Sbjct: 1553 DRAALAILFQSCHGLRWLRRAGWDGDSDRRHGVAWTTENARVLKLELGNNRLEGYIPRELGVMS 1616
BLAST of mRNA_P-canaliculata_contig10169.260.1 vs. uniprot
Match: A0A6H5KQQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQQ0_9PHAE) HSP 1 Score: 57.4 bits (137), Expect = 4.420e-7 Identity = 29/66 (43.94%), Postives = 42/66 (63.64%), Query Frame = 1
Query: 22 DRAALAVLFRSCHGPRWLRRAGWSAGSDERT--GVAWTSDRSRLIKLELGTNRVEGYMPKELGALS 213
DR AL LF S G W RR W+ +D T GV +D+ R++ ++LG+N ++G +PKELGAL+
Sbjct: 5 DRDALVALFCSTGGAGWTRRDNWNTDADRATWFGVK-VNDQGRVVDVDLGSNNLQGPIPKELGALA 69 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10169.260.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig10169.260.1 >prot_P-canaliculata_contig10169.260.1 ID=prot_P-canaliculata_contig10169.260.1|Name=mRNA_P-canaliculata_contig10169.260.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=257bp MVPAHVDDRAALAVLFRSCHGPRWLRRAGWSAGSDERTGVAWTSDRSRLIback to top mRNA from alignment at P-canaliculata_contig10169:2556..10232- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig10169.260.1 ID=mRNA_P-canaliculata_contig10169.260.1|Name=mRNA_P-canaliculata_contig10169.260.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=7677bp|location=Sequence derived from alignment at P-canaliculata_contig10169:2556..10232- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig10169:2556..10232- >mRNA_P-canaliculata_contig10169.260.1 ID=mRNA_P-canaliculata_contig10169.260.1|Name=mRNA_P-canaliculata_contig10169.260.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1542bp|location=Sequence derived from alignment at P-canaliculata_contig10169:2556..10232- (Pelvetia canaliculata dioecious)back to top |