mRNA_P-canaliculata_contig10166.258.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig10166.258.1
Unique NamemRNA_P-canaliculata_contig10166.258.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig10166.258.1 vs. uniprot
Match: D8LCC5_ECTSI (Deubiquitinating enzyme A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCC5_ECTSI)

HSP 1 Score: 345 bits (885), Expect = 5.190e-103
Identity = 224/424 (52.83%), Postives = 263/424 (62.03%), Query Frame = 2
Query:  446 KSEAHFFEPYVEGDMAAFVRYVAIKRQNAVWGDDPEVQALCEIYDRPAEIWAYDPQLGAKTLRTFHEAAGRAGGQIEARRPPMRLSYYGGGHYDSVSPIDDRAPLGEESQASAS----------------------------TPEPGVLEESALERSRRRKAEAGSGRWDPEEMKLRQEDE-SPSEQNIMDYALAWSRNVFETQFDDIESALVASVDHMEESHLSSLKAASRDSELVVLQEEMLLTAQAQSEEEQLRKALEASRCTAAAAAAEAEMVSQAIAESMAL-----------TSGGLTEKAGMVEGKP-SPGADGQDNQVLGAAAAGTAAAGEDEDED---------------------------FKRALLLSGMVE--EWEA-PPEGVGTGQDFDLDELQEDP-ELKFAIDASLAGD 1501
            +SEAHFFEPYVEGDMAAF+RY+ +KRQNAVWGDDPEVQALCEIYDRPAEIWAYDPQLGAKTLRTFHEAAG AGG+  + RPPMRLSYYGGGHYDSV+P+D + PL  ++   A                              PEPG LEE+ALERS+ R AE GSGRWD EEMK+R++DE SP+ +  MD+ALAWSRNVFE QFDD++SALVASVDHME+S+LSSL+AASRDSELVVLQEEML TAQAQSEEEQLR ALEASR +         +V QA+AESM              + G+    G   G   SP A                                                     K+ALL+SGM     WE  P E  G  + F +D+L+ED  +L+ AI+ASLAG+
Sbjct:  378 ESEAHFFEPYVEGDMAAFLRYLEVKRQNAVWGDDPEVQALCEIYDRPAEIWAYDPQLGAKTLRTFHEAAGSAGGRHGSPRPPMRLSYYGGGHYDSVAPLDSQPPLVGDAAGPAGXXXXXXXXXXXXXXXXXXXXXXXDAVSPAPEPGQLEEAALERSKIRAAEVGSGRWDLEEMKMRKDDENSPAGRAAMDHALAWSRNVFEAQFDDLDSALVASVDHMEQSNLSSLEAASRDSELVVLQEEMLRTAQAQSEEEQLRNALEASRNSXXXXXXXXXLVRQAMAESMGAGXXXXXXXXXXXASGVCVDGGNARGDVGSPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKKALLMSGMAAGGAWETLPAEAGGPAKGFGVDDLEEDDAQLRLAIEASLAGE 801          
BLAST of mRNA_P-canaliculata_contig10166.258.1 vs. uniprot
Match: W2LIN5_PHYPR (Deubiquitinating enzyme A n=12 Tax=Phytophthora TaxID=4783 RepID=W2LIN5_PHYPR)

HSP 1 Score: 160 bits (405), Expect = 6.060e-38
Identity = 102/242 (42.15%), Postives = 146/242 (60.33%), Query Frame = 2
Query:  446 KSEAHFFEPYVEGDMAAFVRYVAIKRQNAVWGDDPEVQALCEIYDRPAEIWAYDPQLGAKTLRTFHEAAGRAGGQIEARRPPMRLSYYGGGHYDSVSPIDDRAPLGEESQASASTPEPGVLEESALERSRRRKAEAGSGRWDPEEMKLR-QEDESPSEQNIMDYALAWSRNVFETQFDDIESALVAS-VDHMEESHLSS------LKAASRDSELVVLQEEMLLTAQAQSEEEQLRKALEAS 1147
            +SE  +FEPYV GDMAAF+RY+  KR++ VWGDDPE+QALCE+YDRPAE++AYDPQ G + LR FHE +  A       RPP+RLSYYGGGHYDS+        +G + QA+     PG  E+  +  S R  +          E +++ Q D   +E   ++  L  SRN F+     +E  L  S V++ E S   +      ++ A+R+SE+  +Q E+L  A+A+SEEEQ++ A++AS
Sbjct:  259 ESEKEYFEPYVVGDMAAFMRYLRYKRRDGVWGDDPELQALCELYDRPAEVFAYDPQQGFRKLRCFHENSALA-----RTRPPIRLSYYGGGHYDSL--------VGPDHQANLIRERPGQWEQRHIGYSHRINSRETRNDVSGVEQEVQAQSDRERTEVEQLEQVLVQSRNEFDAMDKSLEETLKLSLVEYGEASPAQAHREREEIEEATRESEMAAIQAELLAKAKAESEEEQMKSAIQAS 487          
BLAST of mRNA_P-canaliculata_contig10166.258.1 vs. uniprot
Match: K3WER0_GLOUD (Deubiquitinating enzyme A n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WER0_GLOUD)

HSP 1 Score: 160 bits (405), Expect = 1.160e-37
Identity = 129/365 (35.34%), Postives = 186/365 (50.96%), Query Frame = 2
Query:  446 KSEAHFFEPYVEGDMAAFVRYVAIKRQNAVWGDDPEVQALCEIYDRPAEIWAYDPQLGAKTLRTFHEAAGRAGGQIEARRPPMRLSYYGGGHYDSVSPIDDRAPLGEESQASASTPEPGVLEESALERSRR-RKAEAGSGRWDPEEMKLRQEDESPSEQNIMDYALAWSRNVFETQFDDIESALVASVDHMEESHLSS---------LKAASRDSELVVLQEEMLLTAQAQSEEEQLRKALEASRCTAAAAAAEAEMVSQAIAESMALTSGGLTEKAGMVEGKPSPGADGQDNQVLGAAAAGTAAAGEDEDEDFKRALLLSGM-----VEEWEAPPEGVGTGQDFDLD-ELQEDPELKFAIDASL 1492
            +SE  +FEPYV GDM AF+RY+  KR+  VWGDDPE+QA+CE+YDRPAE++AYDP  G + LRTFHE++G     +   RPP+ LSYYGGGHYDS+        +G     +     PG  E   LE SRR    E      +       + D   +E   ++  L  SRN F+    +++  L  S++  E S+ ++         ++ A R+SE+  +Q +++  A+  SEEE ++KA+EAS  T  A A + +   Q ++ ++  + G L                   N+  GA  A TAA+  D DE  + AL LS         +W   P   G G+      E  ED EL+ AI ASL
Sbjct:  294 ESEKEYFEPYVVGDMEAFLRYLNYKRRQGVWGDDPELQAMCELYDRPAEVYAYDPVHGFRKLRTFHESSG-----LSRNRPPICLSYYGGGHYDSL--------VGMNHSENCIRDPPGEWERRHLEYSRRINTREQDDSTSEVARQVQAESDRETTEMAQLEQTLLLSRNEFDGMNSNLDETLKLSLEEYENSNAATASVGTSDAQIQEAKRESEMTAIQADLIAKAKQASEEELMKKAIEASLETLPAGANDMDFDDQ-VSAAIKASLGHLGH-----------------NKSAGAGGATTAAS--DYDEQLRLALELSAQEYTTTASDWMFSP---GGGEHTTASGENDEDAELQRAIQASL 622          
BLAST of mRNA_P-canaliculata_contig10166.258.1 vs. uniprot
Match: G4Z036_PHYSP (Deubiquitinating enzyme A n=6 Tax=Phytophthora TaxID=4783 RepID=G4Z036_PHYSP)

HSP 1 Score: 159 bits (402), Expect = 1.250e-37
Identity = 128/358 (35.75%), Postives = 181/358 (50.56%), Query Frame = 2
Query:  446 KSEAHFFEPYVEGDMAAFVRYVAIKRQNAVWGDDPEVQALCEIYDRPAEIWAYDPQLGAKTLRTFHEAAGRAGGQIEARRPPMRLSYYGGGHYDSVSPIDDRAPLGEESQASASTPEPGVLEESALERSRR-RKAEAGSGRWDPEEMKLRQEDESPSEQNIMDYALAWSRNVFETQFDDIESALVASV-DHMEES-------HLSSLKAASRDSELVVLQEEMLLTAQAQSEEEQLRKALEASRCTAAAAAAEAEMVSQAIAESMALTSGGLTEKAGMVEGKPSPGADGQDNQVLGAAAAGTAAAGEDEDEDFKRALLLSGMVEEWEAPPEGVGTGQDFDLDELQEDPELKFAIDASL 1492
            +SE  +FEPYV GDMAAF+RY+  KR++ VWGDDPE+QALCE+YDRPAE++AYDP  G + LR FHE +      +   RPP+RLSYYGGGHYDS+   D  A L  E+        PG  E+  +E S R    E        E+    Q D   +E   ++  L  SRN F+     +E  L  S+ +H  E+         + ++ A+R+SE+  +Q E+L  A+A+SEEE ++ A++AS     A  ++ +  +Q  A   A                            LG A  G +   +D DE  +RA+ LS       A P G+   +    DE+ E   L+ AI ASL
Sbjct:  242 ESEKEYFEPYVVGDMAAFMRYLRYKRRDGVWGDDPELQALCELYDRPAEVFAYDPVQGFRKLRCFHENSA-----LSRSRPPIRLSYYGGGHYDSLVGADHAANLIRET--------PGQWEQRHIEYSHRINSRETHDDVAGVEQQVQAQSDRERTEVEQLEQILMQSRNEFDAMDASLEETLKLSLAEHGGEASPALANRERNDIEEATRESEMAAIQAELLAKAKAESEEEHMKTAIQAS-LGGHALVSDGDFDAQMSAAIQA---------------------------SLGDAGPGASIHADDYDEQLRRAMELSAQEYAPPAQPFGLYGDESASTDEMDE---LQRAIQASL 555          
BLAST of mRNA_P-canaliculata_contig10166.258.1 vs. uniprot
Match: A0A8J5J3G2_9STRA (OTU domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5J3G2_9STRA)

HSP 1 Score: 160 bits (406), Expect = 3.090e-37
Identity = 101/243 (41.56%), Postives = 146/243 (60.08%), Query Frame = 2
Query:  446 KSEAHFFEPYVEGDMAAFVRYVAIKRQNAVWGDDPEVQALCEIYDRPAEIWAYDPQLGAKTLRTFHEAAGRAGGQIEARRPPMRLSYYGGGHYDSVSPIDDRAPLGEESQASASTPEPGVLEESALERSRR-RKAEAGSGRWDPEEMKLRQEDESPSEQNIMDYALAWSRNVFETQFDDIESALVASV-DHMEES-------HLSSLKAASRDSELVVLQEEMLLTAQAQSEEEQLRKALEAS 1147
            +SE  +FEPYV GDMAAF+RY++ KR++ VWGDDPE+QALCE+YDRPAE++AYDPQ G + LR FHE +      +   RPP+RLSYYGGGHYDS+        +G + Q++    +PG  E+  +  S R    E  S     E+    Q D   +E   ++  L  SRN F+     +E  L  S+ +H  E+           ++ A+R+SE+  +Q E+L  A+A+SEEEQ++ A++AS
Sbjct:  473 ESEKEYFEPYVVGDMAAFMRYLSYKRRDGVWGDDPELQALCELYDRPAEVFAYDPQQGFRKLRCFHENSA-----LSRTRPPIRLSYYGGGHYDSL--------VGTDHQSNLIREDPGQWEQRHIGYSHRINSRETRSDVSGVEQEVQTQSDRERTEVEQLEQVLMQSRNEFDAMDRSLEDTLKLSLAEHGGEASPAQAHREREEMEEATRESEMAAIQAELLAKAKAESEEEQMKSAIQAS 702          
BLAST of mRNA_P-canaliculata_contig10166.258.1 vs. uniprot
Match: A0A0P1AKP3_PLAHL (Deubiquitinating enzyme A n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AKP3_PLAHL)

HSP 1 Score: 157 bits (396), Expect = 5.660e-36
Identity = 101/244 (41.39%), Postives = 148/244 (60.66%), Query Frame = 2
Query:  446 KSEAHFFEPYVEGDMAAFVRYVAIKRQNAVWGDDPEVQALCEIYDRPAEIWAYDPQLGAKTLRTFHEAAGRAGGQIEARRPPMRLSYYGGGHYDSVSPIDDRAPLGEESQASASTPEPGVLEESALERSRRRKAEAGSGRW---DPEEMKLRQEDESPSEQNIMDYALAWSRNVFETQFDDIESALVASV-DHMEESHLS------SLKAASRDSELVVLQEEMLLTAQAQSEEEQLRKALEAS 1147
            +SE  +FEPYV GDMAAF+RY+  KR++ VWGDDPE+QALCE+YDRPAE++AYDPQ G + LR FHE +G A       RPP+RLSYYGGGHYDS+        +G + Q +     PG  E+  +  S R  +   S      + ++++++ E E  +E   ++  L  SRN F+     +E  L  S+ +H E+S          ++ A+R+SE+  +Q E+L  A+ +SEEEQ+  A++AS
Sbjct:  475 ESEKEYFEPYVVGDMAAFMRYLRYKRRDGVWGDDPELQALCELYDRPAEVFAYDPQNGFRKLRCFHENSGLA-----RSRPPIRLSYYGGGHYDSL--------VGPDHQVNLVNEIPGQWEQRHIGYSYRINSRENSNDTPGGEGQKVQIQSEHER-TEVEQLEQVLVQSRNEFDAMDKSLEETLNLSLAEHEEKSKAQVXXXXXEVEEATRESEIAAIQAELLAKAKEESEEEQMNSAIQAS 704          
BLAST of mRNA_P-canaliculata_contig10166.258.1 vs. uniprot
Match: A0A833TF83_PHYIN (Deubiquitinating enzyme A n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833TF83_PHYIN)

HSP 1 Score: 157 bits (396), Expect = 6.100e-36
Identity = 100/242 (41.32%), Postives = 145/242 (59.92%), Query Frame = 2
Query:  446 KSEAHFFEPYVEGDMAAFVRYVAIKRQNAVWGDDPEVQALCEIYDRPAEIWAYDPQLGAKTLRTFHEAAGRAGGQIEARRPPMRLSYYGGGHYDSVSPIDDRAPLGEESQASASTPEPGVLEESALERSRRRKAEAGSGRWDPEEMKLR-QEDESPSEQNIMDYALAWSRNVFETQFDDIESALVASV-DHMEESHLSS------LKAASRDSELVVLQEEMLLTAQAQSEEEQLRKALEAS 1147
            +SE  +FEPYV GDMAAF+RY+  KR++ VWGDDPE+QALCE+YDRPAE++AYDPQ G + LR FHE +  A       RPP+RLSYYGGGHYDS+        +G + QA+     PG  E+  +  S R  +          E +++ Q D   +E   ++  L  SRN F+     +E  L  S+ +H E +   +      +  A+R+SE+  +Q E++  A+A+SEEEQ++ A++AS
Sbjct:  498 ESEKEYFEPYVVGDMAAFMRYLHYKRRDGVWGDDPELQALCELYDRPAEVFAYDPQQGFRKLRCFHENSALA-----RSRPPIRLSYYGGGHYDSL--------MGSDHQANLIRETPGQWEQRHIGYSHRINSRETRDDVSGVEQEVQAQSDRERTEVEQLEQVLMQSRNEFDAMDRSLEETLKLSLAEHGEAAPAQAHREREEIAEATRESEMAAIQAELVAKAKAESEEEQMKSAIKAS 726          
BLAST of mRNA_P-canaliculata_contig10166.258.1 vs. uniprot
Match: H3GFG4_PHYRM (Deubiquitinating enzyme A n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GFG4_PHYRM)

HSP 1 Score: 150 bits (379), Expect = 1.000e-34
Identity = 97/243 (39.92%), Postives = 141/243 (58.02%), Query Frame = 2
Query:  446 KSEAHFFEPYVEGDMAAFVRYVAIKRQNAVWGDDPEVQALCEIYDRPAEIWAYDPQLGAKTLRTFHEAAGRAGGQIEARRPPMRLSYYGGGHYDSVSPIDDRAPLGEESQASASTPEPGVLEESALERSRRRKAEAGSGRWDPEEMKLRQE-DESPSEQNIMDYALAWSRNVFETQFDDIESALVASV-DHMEES-------HLSSLKAASRDSELVVLQEEMLLTAQAQSEEEQLRKALEAS 1147
            +SE  +FEPYV GDMAAF+RY+  KR++ VWGDDPE+QALCE+YDRPAE++AYDP  G + LR FHE +      +   RPP+RLSYYGGGHYDS+   D    L  E+        PG  E+  +  S R  +          E +++ E D   +E   ++  L  SRN F+     +E  L  S+ +H  E          + ++ A+R+SE+  +Q E+L  A+A+SE+EQ++  ++AS
Sbjct:  259 ESEKEYFEPYVVGDMAAFMRYLRYKRRDGVWGDDPELQALCELYDRPAEVFAYDPAEGFRKLRCFHENSA-----LSRSRPPIRLSYYGGGHYDSLVGPDHETNLIRET--------PGQWEQRHIGYSHRINSRETRNEVASIEQQVQTESDRERTEVEQLENILMLSRNEFDAMDTSLEETLKKSLAEHGGEGPPAQAHRERADIEEATRESEMAAIQTELLAKAKAESEDEQMKSVIQAS 488          
BLAST of mRNA_P-canaliculata_contig10166.258.1 vs. uniprot
Match: A0A6G0W5F2_9STRA (Deubiquitinating enzyme A n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W5F2_9STRA)

HSP 1 Score: 148 bits (373), Expect = 1.710e-34
Identity = 100/237 (42.19%), Postives = 136/237 (57.38%), Query Frame = 2
Query:  452 EAHFFEPYVEGDMAAFVRYVAIKRQNAVWGDDPEVQALCEIYDRPAEIWAYDPQLGAKTLRTFHEAAGRAGGQIEARRPPMRLSYYGGGHYDSVSPIDDRAPLGEESQASASTPEPGVLEESALERSRRRKAEAGSGRWDPEEMKLRQEDESPSEQNIMDYALAWSRNVFETQFDDIESALVASVDHME-----ESHLSSLKAASRDSELVVLQEEMLLTAQAQSEEEQLRKALEAS 1147
            E  +FEP+V GDMAAF+RYV  KR +AVWGDDPE+QA+CE+YDR AE++AYD Q+GAK LRTFHE          + RP + LS+YGGGHYDS+        +G + + +  T  PGV E        RR A A S RW  EE K                AL  SR  F     ++++AL AS++  E     +   + ++A   +SEL  LQ EML +   QSE+E +++A++AS
Sbjct:  217 EKEYFEPFVVGDMAAFLRYVNHKRHDAVWGDDPELQAICELYDRSAEVFAYDAQVGAKRLRTFHE---------NSERPSICLSFYGGGHYDSL--------VGRQHRLNLITETPGVYEA-------RRLAVASSKRWSAEEAK----------------ALEISRREFGGMAMNLDAALNASIESYEAEVVRQIESTDVRAVQEESELDHLQTEMLKSVAQQSEDELVQQAVQAS 413          
BLAST of mRNA_P-canaliculata_contig10166.258.1 vs. uniprot
Match: A0A5D6YD11_9STRA (Deubiquitinating enzyme A n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YD11_9STRA)

HSP 1 Score: 150 bits (379), Expect = 9.010e-34
Identity = 98/256 (38.28%), Postives = 141/256 (55.08%), Query Frame = 2
Query:  446 KSEAHFFEPYVEGDMAAFVRYVAIKRQNAVWGDDPEVQALCEIYDRPAEIWAYDPQLGAKTLRTFHEAAGRAGGQIEARRPPMRLSYYGGGHYDSVSPIDDRAPLGEESQASASTPEPGVLEESALERSRRRKAEAGSGRWDPE-EMKLRQE-DESPSEQNIMDYALAWSRNVFETQFDDIESALVASVDHMEES--------------------HLSSLKAASRDSELVVLQEEMLLTAQAQSEEEQLRKALEAS 1147
            +SE  +FEPYV GDMAAFVRY+  KR+  VWGDDPE+QA+CE+YDRPAE++AYDP  G + LRTFHE++G     +   RPP+RLSYYGGGHYDS+  +D  A    ++        PG  E   +E SRR          D +  +++  E D   +E   ++  L  SR  F+     ++  L  S++  E S                        L+ A+R+SE+  +Q +++   +  SEEE ++KA+EAS
Sbjct:  516 ESEKEYFEPYVVGDMAAFVRYLNYKRRAGVWGDDPELQAMCELYDRPAEVYAYDPAHGFRKLRTFHESSG-----VSRSRPPIRLSYYGGGHYDSLVGLDHAANCIRDA--------PGEWERRHIEYSRRINTRDRDDAADADVALEVAAESDRETTEMAQLEQMLLLSRTEFDGMDSSLDDTLKLSLEEYERSGGAEAAASGGAGAGDVAVEREQQELRDATRESEMAAIQADLIAKVKQASEEEMVKKAIEAS 758          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10166.258.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCC5_ECTSI5.190e-10352.83Deubiquitinating enzyme A n=2 Tax=Ectocarpus TaxID... [more]
W2LIN5_PHYPR6.060e-3842.15Deubiquitinating enzyme A n=12 Tax=Phytophthora Ta... [more]
K3WER0_GLOUD1.160e-3735.34Deubiquitinating enzyme A n=1 Tax=Globisporangium ... [more]
G4Z036_PHYSP1.250e-3735.75Deubiquitinating enzyme A n=6 Tax=Phytophthora Tax... [more]
A0A8J5J3G2_9STRA3.090e-3741.56OTU domain-containing protein n=1 Tax=Phytophthora... [more]
A0A0P1AKP3_PLAHL5.660e-3641.39Deubiquitinating enzyme A n=1 Tax=Plasmopara halst... [more]
A0A833TF83_PHYIN6.100e-3641.32Deubiquitinating enzyme A n=1 Tax=Phytophthora inf... [more]
H3GFG4_PHYRM1.000e-3439.92Deubiquitinating enzyme A n=1 Tax=Phytophthora ram... [more]
A0A6G0W5F2_9STRA1.710e-3442.19Deubiquitinating enzyme A n=1 Tax=Aphanomyces eute... [more]
A0A5D6YD11_9STRA9.010e-3438.28Deubiquitinating enzyme A n=1 Tax=Pythium brassicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10166contigP-canaliculata_contig10166:2791..6982 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score323.9
Seed ortholog evalue8.7e-86
Seed eggNOG ortholog2880.D8LCC5
KEGG koko:K12655
KEGG Pathwayko04622,map04622
EggNOG free text desc.thiol-dependent ubiquitin-specific protease activity
EggNOG OGsKOG2605@1,KOG2605@2759
EC3.4.19.12
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko04121
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionOvarian tumour, otubain
Ec32 orthologEc-14_005270.1
Exons5
Model size2424
Cds size1017
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815589.755958-UTR-P-canaliculata_contig10166:2790..37101622815589.755958-UTR-P-canaliculata_contig10166:2790..3710Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10166 2791..3710 -
1693494153.6729574-UTR-P-canaliculata_contig10166:2790..37101693494153.6729574-UTR-P-canaliculata_contig10166:2790..3710Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10166 2791..3710 -
1622815589.8268142-UTR-P-canaliculata_contig10166:6495..69821622815589.8268142-UTR-P-canaliculata_contig10166:6495..6982Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10166 6496..6982 -
1693494153.74386-UTR-P-canaliculata_contig10166:6495..69821693494153.74386-UTR-P-canaliculata_contig10166:6495..6982Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10166 6496..6982 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815589.7681358-CDS-P-canaliculata_contig10166:3710..41361622815589.7681358-CDS-P-canaliculata_contig10166:3710..4136Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10166 3711..4136 -
1693494153.6841962-CDS-P-canaliculata_contig10166:3710..41361693494153.6841962-CDS-P-canaliculata_contig10166:3710..4136Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10166 3711..4136 -
1622815589.7782574-CDS-P-canaliculata_contig10166:4431..45391622815589.7782574-CDS-P-canaliculata_contig10166:4431..4539Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10166 4432..4539 -
1693494153.6964955-CDS-P-canaliculata_contig10166:4431..45391693494153.6964955-CDS-P-canaliculata_contig10166:4431..4539Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10166 4432..4539 -
1622815589.7883806-CDS-P-canaliculata_contig10166:4932..50381622815589.7883806-CDS-P-canaliculata_contig10166:4932..5038Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10166 4933..5038 -
1693494153.7079334-CDS-P-canaliculata_contig10166:4932..50381693494153.7079334-CDS-P-canaliculata_contig10166:4932..5038Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10166 4933..5038 -
1622815589.8024447-CDS-P-canaliculata_contig10166:5425..56761622815589.8024447-CDS-P-canaliculata_contig10166:5425..5676Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10166 5426..5676 -
1693494153.7212262-CDS-P-canaliculata_contig10166:5425..56761693494153.7212262-CDS-P-canaliculata_contig10166:5425..5676Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10166 5426..5676 -
1622815589.8160741-CDS-P-canaliculata_contig10166:6369..64951622815589.8160741-CDS-P-canaliculata_contig10166:6369..6495Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10166 6370..6495 -
1693494153.731568-CDS-P-canaliculata_contig10166:6369..64951693494153.731568-CDS-P-canaliculata_contig10166:6369..6495Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10166 6370..6495 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10166.258.1prot_P-canaliculata_contig10166.258.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig10166 3711..6495 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig10166.258.1

>prot_P-canaliculata_contig10166.258.1 ID=prot_P-canaliculata_contig10166.258.1|Name=mRNA_P-canaliculata_contig10166.258.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=339bp
MAAFVRYVAIKRQNAVWGDDPEVQALCEIYDRPAEIWAYDPQLGAKTLRT
FHEAAGRAGGQIEARRPPMRLSYYGGGHYDSVSPIDDRAPLGEESQASAS
TPEPGVLEESALERSRRRKAEAGSGRWDPEEMKLRQEDESPSEQNIMDYA
LAWSRNVFETQFDDIESALVASVDHMEESHLSSLKAASRDSELVVLQEEM
LLTAQAQSEEEQLRKALEASRCTAAAAAAEAEMVSQAIAESMALTSGGLT
EKAGMVEGKPSPGADGQDNQVLGAAAAGTAAAGEDEDEDFKRALLLSGMV
EEWEAPPEGVGTGQDFDLDELQEDPELKFAIDASLAGD*
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mRNA from alignment at P-canaliculata_contig10166:2791..6982-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10166.258.1 ID=mRNA_P-canaliculata_contig10166.258.1|Name=mRNA_P-canaliculata_contig10166.258.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=4192bp|location=Sequence derived from alignment at P-canaliculata_contig10166:2791..6982- (Pelvetia canaliculata dioecious)
CGTCATGCTGTGTTCAGACGCGTCCACACAGGAAGCACAGCACCGACGTC GCGAGCTATGTTTTCGTGAGATTTTGGCACCATTTTCCAGAATCTGCAAT GCGCAATGCTGTTCACTGTCTTGAGTACGACGGTACCTAGCCTTGTTTGG TTACGTTTGCCGAGGAAATCGAGCATGGGCAGCCTCTGTGGCAGCACTAA CCTTGTCACCCACGCTGCCACACGTGTTGTTGATAATATTGGCGGTGGAA TAGAATGAGCGAGTCGAAGCACGTAAGCGAAGCGACATCAATGCGCATCG TCACGCTTCGTGAAGAGCACACAAGATAAATTGCGCGAGGGGTTGTCCGT CAAGCTCACACTCCCCATCCCATCAATTTCCATCAATTCCCCCTGCCGTA TCTGCCCTTCCCCCTGCCGTATTTTTGCGAAACCTCATTACGCGTAAGAG CGAGGCCCACTTCTTCGAGCCATACGTAGAAGGTGACATGGCCGCGTTCG TGAGATACGTGGCCATCAAGCGCCAGAACGCGGTCTGGGGGGACGACCCG GAGGTCCAAGCGCTGTGCGAAATCTACGATAGACCGGCAGAAATATGGGC GTACGACCCTCAGGTGACATGAGTGGTTTTTGAGTATCGCCGGAGCTTAT GCTCGCATCGTTGCGGATCACGCAAAATGACGGCTTGTTGCGCGCGTCGA TCGGTAACGGAGGATCTGCGCCTCGGGAACATGTTTGCTGGGGCGGCAAA AGAGGATCGTATTTCTGGCCCGCTGCTGTCTCGCCCACCTGCCAGTTTTA TTTTTTCTCTCGTTTGACAAAGTGTACCATCCAGACCCGGCGAGCGAATT CCCTTTTCCCGCCCTGTTTTTGTCTAATAATAGTAGAGGTCAGTCCAGCG TTGATACTGTAAGCTGCGAATTCAGAAAGAAATCGCCTCTCTCCGCGTAC GAAATATCGACAAAATATTCTCCCAACCGTTTTATTCTTGTTGCTGCCAC TTACCGCACCTGCCGATAAGAAAGTTAACAGCGTTCTCCATCTCCCCTGG GGTATTGTATACGCTATGCCATAGTGTTATGTAATGTAGTGTGCACTGTG GCGTATATCTCTATCTCGCGTTAGTGCAGTGCGGTGTTTCGCGTGGTAGG GTGGTTTTATCTCCTTTTCCATCCACAGTGCACTCCTCCTTATTTTAATT TATGTCCTGTTCTCTTCTGCTCGATTCTTTTTATTTTTTGATTCCTTGCT CTTGACATTTTACCTCCACGCCGCTGGGGTTGGGGGATGCGCGCCTCAAC TCGTAGCTCGGCGCGAAGACACTGCGCACGTTTCACGAAGCCGCCGGCCG CGCCGGGGGGCAGATCGAGGCCCGTCGCCCTCCCATGCGCCTCAGCTACT ACGGCGGCGGGCATTACGATTCCGTGTCTCCCATCGACGACCGTGCACCC CTCGGAGAAGAGTCACAGGCATCCGCATCCACCCCCGAACCCGGTGTTTT GGAGGAGTCGGCGCTGGAGAGATCGAGAAGGAGAAAAGCGGAGGCTGGGA GTGGCAGGTGCGAGGTCAAAACACACGAAATCTCAAGTGGCGGATGCATC GAGCTCCGTATTTTTTCTGTCCGTGTTGAGCGTCGTTTTTTTTTAAATCC AATATCGCGCGCCTTGTAGGCTTGGCTGGACGATTCACTGCTGTGTACGA AATACTTGGGTTGAGATCTTCGTTCGGCAATCCTGGTCGATGCCGAGTGC TATTAATCGGCCGTTGTTCCATCCACCTATTTAATAGACCCTCCGAGGCA CTGCGGTAGTTTTGTTTTAGTGAAAGGAAAGGCATCTGGGGTGGGCGCAA CTCTTGCCACGCACCGGTACAACCCTTGGAAGAGCTTTTAATAGGCAGAA ACCGAACATATCGTGGATCGCCGTCGATGAACGTGATTGGACAGGTGGGA TCCGGAGGAAATGAAGCTGCGGCAGGAAGATGAGAGCCCGTCGGAACAGA ATATCATGGACTACGCGCTGGCGTGGAGTAGGAACGTGTTCGAGACGCAG GTAAGGTTCGGTATACCTTTTGCCTGACCCCACCCTCTCTCAACCACTTG CCCGCGCCGAGTGTGTAGCGCACCCATCAAGGGAAGATTGCCCGCCTTAG CTCATTTATCCAGACGGAAATTCCTTTTTTGCCTCGTTTGCCTCAAGAGC AGGAAATGAACGCCTTTTCCCTTGGCCTTATGTTTTTACTTATATTTTCC CTTTTTCAACGGTTGGTTGGATTCCTGGGCGTTATCTCTGCTGCCTTTGT TCATGGTTCGCTTCGTGATCGAGCCCGAGACGTTGCCCGCAGAGCGCCTG ACCGTACCCCACCGGTCATTGAATCCAGCTCTCCCTCGAGGCGTTCGTGC ACGATATCACTCCTTCGCCTTGCTACCTTGGTTTATCGCGCAGTTCGACG ATATAGAGAGCGCCCTCGTGGCCAGCGTGGACCATATGGAGGAGTCGCAC CTGAGCTCACTCAAGGCTGCCTCGAGAGACAGCGAGCTCGTCGTGCTTCA GGTGATGAATAATCTTTGCAACCTCGTTAATTGCGACCAAAATTCGATTT TGTGAGGTGGTTCTTTTTCACTCTTTCCTCGAGCGGTCGACTCTGACCTG AATCCTGACTTCGGCTTGCGCACACCATTCTCGTTTGTCTTGTGAGGTTT ACCCCCCTTCGGCGAGTAAGGGGGTTCAGTACAAAAAATATCACCAGCAA GTGATAACTTGCCCCGAATGCAGCCCGTGAAGATTCCCCCCTATTTTTGT TGTTGAGATTTCACACTTTTTTGTTGACCTGTCGCCGTCCCTGCAGGAGG AGATGCTTCTCACCGCGCAGGCTCAGAGCGAAGAAGAGCAGCTCCGCAAA GCCCTCGAAGCGTCGCGCTGTACCGCGGCAGCAGCAGCCGCAGAGGCGGA AATGGTCAGCCAGGCTATTGCGGAATCTATGGCCTTGACGAGCGGGGGAT TGACAGAGAAGGCTGGAATGGTAGAAGGGAAACCATCACCCGGTGCCGAT GGGCAAGATAATCAAGTCCTCGGGGCCGCGGCGGCAGGCACCGCGGCGGC TGGCGAGGACGAGGACGAGGACTTCAAAAGGGCTCTTTTGTTATCAGGGA TGGTGGAGGAATGGGAGGCGCCACCGGAGGGCGTTGGTACCGGCCAAGAT TTTGATCTCGACGAGCTGCAAGAGGACCCCGAGTTGAAATTTGCCATTGA CGCTTCTCTGGCGGGCGACTGAAATTTCAATGGCACGGATTCGCGTCGTG TGGCTTGTTAAATGAAGAGTCTCGTCTTCCTCTTTTTCTGGTCGGCTGCG GCACTGCGTTTTTTTTCTTCTTCTGAACTAAAAGCGCGAAGCGGGAGGTT CTACGAACAGCTTACTCGCGCCACTGTCGGCCACGTGTTGTTCACGTGCC GTTCCTGCAGCATGGGTGCGTGTGCGAAAATGTAGTCTGGATTCATTCGG CTAGATTGGGGCTCTCCGCACCTTGTGCGGGTGCTTCCCTAGCTTCTCAC ACTTGTCGTCGAAAAAAAGAGAGAGTTGTGGGCTGCCGGGCGAATGAGGC TTCGTACTGTAAGCAGGTGCGATCACTCAAGTTTTCGTCTCGACTAATGT GTCAATCATCAGTGATGGCTCGCTGTTCTTGGCTGGTGGGCAATCAAAGT TTTCACCTCGGTAGCTTGAGTATAACACAAGACATATATGACACCCAGGG AGTGTGAATGTACATTGCATATAGGAAGCTCTATGGAAACCAGATGAGAA GGGGAGGAAGAAGTCAGATTACCCGCATCCTTTGGTATCCTCAAGGACAA CATACAGGACTTGATCTACATCAATGGTTGCGTCTACCTAACTCTTACAT GTCATGACTGTCAGTCAATCCATTGATTGGCCATTCAAGGAGGATAACTA TCAGTCAATCCATTGATTGGCCAGTCAAGGAGGATAAGGCTGTGCTTTTT TGCTTTGGTACCGACACCACCGGGGGGGAAATTATGTTGGTACTGAAATT CTGCACCACCAGCTGAATGTGTCGAAACGTTTAGTTTAATATGACTTGCT TTTGACATTAAAAGACTTCAGAATTATCCAACTGCATCAGGTTCGGACTT GAACGTTTGATTTCAGAAGAATGAAGAAAGGGAGCACTGAAC
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Coding sequence (CDS) from alignment at P-canaliculata_contig10166:2791..6982-

>mRNA_P-canaliculata_contig10166.258.1 ID=mRNA_P-canaliculata_contig10166.258.1|Name=mRNA_P-canaliculata_contig10166.258.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=2034bp|location=Sequence derived from alignment at P-canaliculata_contig10166:2791..6982- (Pelvetia canaliculata dioecious)
ATGGCCGCGTTCGTGAGATACGTGGCCATCAAGCGCCAGAACGCGGTCTG
GGGGGACGACCCGGAGGTCCAAGCGCTGTGCGAAATCTACGATAGACCGG
CAGAAATATGGGCGTACGACCCTCAGATGGCCGCGTTCGTGAGATACGTG
GCCATCAAGCGCCAGAACGCGGTCTGGGGGGACGACCCGGAGGTCCAAGC
GCTGTGCGAAATCTACGATAGACCGGCAGAAATATGGGCGTACGACCCTC
AGCTCGGCGCGAAGACACTGCGCACGTTTCACGAAGCCGCCGGCCGCGCC
GGGGGGCAGATCGAGGCCCGTCGCCCTCCCATGCGCCTCAGCTACTACGG
CGGCGGGCATTACGATTCCGTGTCTCCCATCGACGACCGTGCACCCCTCG
GAGAAGAGTCACAGGCATCCGCATCCACCCCCGAACCCGGTGTTTTGGAG
GAGTCGGCGCTGGAGAGATCGAGAAGGAGAAAAGCGGAGGCTGGGAGTGG
CAGCTCGGCGCGAAGACACTGCGCACGTTTCACGAAGCCGCCGGCCGCGC
CGGGGGGCAGATCGAGGCCCGTCGCCCTCCCATGCGCCTCAGCTACTACG
GCGGCGGGCATTACGATTCCGTGTCTCCCATCGACGACCGTGCACCCCTC
GGAGAAGAGTCACAGGCATCCGCATCCACCCCCGAACCCGGTGTTTTGGA
GGAGTCGGCGCTGGAGAGATCGAGAAGGAGAAAAGCGGAGGCTGGGAGTG
GCAGGTGGGATCCGGAGGAAATGAAGCTGCGGCAGGAAGATGAGAGCCCG
TCGGAACAGAATATCATGGACTACGCGCTGGCGTGGAGTAGGAACGTGTT
CGAGACGCAGGTGGGATCCGGAGGAAATGAAGCTGCGGCAGGAAGATGAG
AGCCCGTCGGAACAGAATATCATGGACTACGCGCTGGCGTGGAGTAGGAA
CGTGTTCGAGACGCAGTTCGACGATATAGAGAGCGCCCTCGTGGCCAGCG
TGGACCATATGGAGGAGTCGCACCTGAGCTCACTCAAGGCTGCCTCGAGA
GACAGCGAGCTCGTCGTGCTTCAGTTCGACGATATAGAGAGCGCCCTCGT
GGCCAGCGTGGACCATATGGAGGAGTCGCACCTGAGCTCACTCAAGGCTG
CCTCGAGAGACAGCGAGCTCGTCGTGCTTCAGGAGGAGATGCTTCTCACC
GCGCAGGCTCAGAGCGAAGAAGAGCAGCTCCGCAAAGCCCTCGAAGCGTC
GCGCTGTACCGCGGCAGCAGCAGCCGCAGAGGCGGAAATGGTCAGCCAGG
CTATTGCGGAATCTATGGCCTTGACGAGCGGGGGATTGACAGAGAAGGCT
GGAATGGTAGAAGGGAAACCATCACCCGGTGCCGATGGGCAAGATAATCA
AGTCCTCGGGGCCGCGGCGGCAGGCACCGCGGCGGCTGGCGAGGACGAGG
ACGAGGACTTCAAAAGGGCTCTTTTGTTATCAGGGATGGTGGAGGAATGG
GAGGCGCCACCGGAGGGCGTTGGTACCGGCCAAGATTTTGATCTCGACGA
GCTGCAAGAGGACCCCGAGTTGAAATTTGCCATTGACGCTTCTCTGGCGG
GCGACTGAGAGGAGATGCTTCTCACCGCGCAGGCTCAGAGCGAAGAAGAG
CAGCTCCGCAAAGCCCTCGAAGCGTCGCGCTGTACCGCGGCAGCAGCAGC
CGCAGAGGCGGAAATGGTCAGCCAGGCTATTGCGGAATCTATGGCCTTGA
CGAGCGGGGGATTGACAGAGAAGGCTGGAATGGTAGAAGGGAAACCATCA
CCCGGTGCCGATGGGCAAGATAATCAAGTCCTCGGGGCCGCGGCGGCAGG
CACCGCGGCGGCTGGCGAGGACGAGGACGAGGACTTCAAAAGGGCTCTTT
TGTTATCAGGGATGGTGGAGGAATGGGAGGCGCCACCGGAGGGCGTTGGT
ACCGGCCAAGATTTTGATCTCGACGAGCTGCAAGAGGACCCCGAGTTGAA
ATTTGCCATTGACGCTTCTCTGGCGGGCGACTGA
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