mRNA_P-canaliculata_contig101631.253.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig101631.253.1
Unique NamemRNA_P-canaliculata_contig101631.253.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig101631.253.1 vs. uniprot
Match: X5HZS3_BPKP2 (Uncharacterized protein n=1 Tax=Pseudomonas phage KPP25 TaxID=1462608 RepID=X5HZS3_BPKP2)

HSP 1 Score: 76.6 bits (187), Expect = 5.830e-16
Identity = 44/91 (48.35%), Postives = 52/91 (57.14%), Query Frame = 1
Query:    1 SFTRNQLRAREYYLQLYKATPRW-ETRARLATIYDRATRLRNFGARVHVDHIVPLNSPIVCGLHCLENLQIITERENYAKSNRDFPGSPFE 270
            S  +N  R+  YY QL+ A P+W         IYD A R R+ G  VHVDHIVP+ S +VCGLH   NLQII    N  KSN  +P  PFE
Sbjct:   22 SLNKNYRRSVRYYRQLFLAWPKWCADHPGFKKIYDEAARRRSAGEDVHVDHIVPICSKLVCGLHVPWNLQIIGAGPNLKKSNLWWPDHPFE 112          
BLAST of mRNA_P-canaliculata_contig101631.253.1 vs. uniprot
Match: UPI0011AF68F8 (hypothetical protein n=1 Tax=Ralstonia mannitolilytica TaxID=105219 RepID=UPI0011AF68F8)

HSP 1 Score: 72.4 bits (176), Expect = 1.170e-13
Identity = 39/85 (45.88%), Postives = 50/85 (58.82%), Query Frame = 1
Query:   13 NQLRAREYYLQLYKATPRWETRARLATIYDRATRLRNF-GARVHVDHIVPLNSPIVCGLHCLENLQIITERENYAKSNRDFPGSP 264
            N+ R R + L   +ATP W +R  +  IY  A  L    G ++HVDHIVPL  P+VCGLHC  NLQI+ +  N  K NR +P  P
Sbjct:  120 NRARRRAHEL---RATPGWASREAILAIYVAARSLEEASGKKMHVDHIVPLQHPLVCGLHCESNLQIVDDLTNRKKGNRHWPDMP 201          
BLAST of mRNA_P-canaliculata_contig101631.253.1 vs. uniprot
Match: UPI00117B1259 (hypothetical protein n=1 Tax=Fimbriiglobus ruber TaxID=1908690 RepID=UPI00117B1259)

HSP 1 Score: 72.0 bits (175), Expect = 2.010e-13
Identity = 34/72 (47.22%), Postives = 44/72 (61.11%), Query Frame = 1
Query:   52 KATPRWETRARLATIYDRATRLR-NFGARVHVDHIVPLNSPIVCGLHCLENLQIITERENYAKSNRDFPGSP 264
            +ATP W     +   Y++  R+    G + HVDHIVPL+SP+VCGLHC  NLQI+ E  N  K NR +P  P
Sbjct:  142 QATPTWADFTLITAFYEQCARITAETGVKHHVDHIVPLSSPVVCGLHCQNNLQILPEAANKRKGNRIWPDMP 213          
BLAST of mRNA_P-canaliculata_contig101631.253.1 vs. uniprot
Match: UPI001D8F42D8 (hypothetical protein n=1 Tax=Paraburkholderia gardini TaxID=2823469 RepID=UPI001D8F42D8)

HSP 1 Score: 70.9 bits (172), Expect = 4.790e-13
Identity = 36/72 (50.00%), Postives = 46/72 (63.89%), Query Frame = 1
Query:   52 KATPRWETRARLATIYDRATRL-RNFGARVHVDHIVPLNSPIVCGLHCLENLQIITERENYAKSNRDFPGSP 264
            KATP W  +  +  IY  + RL R  G + HVDHIVPL S +VCG+HC  NLQ++   EN +KSNR +P  P
Sbjct:  133 KATPGWANKEAMHAIYAESLRLTRETGIQHHVDHIVPLVSKVVCGMHCEFNLQVLPGLENQSKSNRWWPDMP 204          
BLAST of mRNA_P-canaliculata_contig101631.253.1 vs. uniprot
Match: A0A1Y0FK34_RALSL (Uncharacterized protein n=1 Tax=Ralstonia solanacearum TaxID=305 RepID=A0A1Y0FK34_RALSL)

HSP 1 Score: 67.8 bits (164), Expect = 4.960e-13
Identity = 33/72 (45.83%), Postives = 46/72 (63.89%), Query Frame = 1
Query:   52 KATPRWETRARLATIYDRATRL-RNFGARVHVDHIVPLNSPIVCGLHCLENLQIITERENYAKSNRDFPGSP 264
            +A P+W    ++  +Y+ A  L ++ G + HVDH+VPL S +VCGLH   NLQIIT  EN +K NR +P  P
Sbjct:    9 QAIPKWADPKKIKLVYEEALALYKSNGVKYHVDHVVPLISDLVCGLHWEGNLQIITASENRSKGNRHWPDMP 80          
BLAST of mRNA_P-canaliculata_contig101631.253.1 vs. uniprot
Match: A0A6M3M5T4_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6M3M5T4_9ZZZZ)

HSP 1 Score: 67.8 bits (164), Expect = 1.080e-12
Identity = 33/72 (45.83%), Postives = 45/72 (62.50%), Query Frame = 1
Query:   52 KATPRWETRARLATIYDRATRLR-NFGARVHVDHIVPLNSPIVCGLHCLENLQIITERENYAKSNRDFPGSP 264
            +A P W    ++A+IY+ A +L    G   HVDHIVPL S +VCGLHC  NLQ++T   N +K+N  +P  P
Sbjct:   38 QAVPGWADHGKIASIYEHARQLTLETGEVHHVDHIVPLTSDLVCGLHCEHNLQVLTAFANLSKANHVWPDMP 109          
BLAST of mRNA_P-canaliculata_contig101631.253.1 vs. uniprot
Match: UPI0012FCAECB (hypothetical protein n=1 Tax=Curvibacter lanceolatus TaxID=86182 RepID=UPI0012FCAECB)

HSP 1 Score: 69.3 bits (168), Expect = 1.980e-12
Identity = 34/72 (47.22%), Postives = 44/72 (61.11%), Query Frame = 1
Query:   52 KATPRWETRARLATIYDRATRLRNF-GARVHVDHIVPLNSPIVCGLHCLENLQIITERENYAKSNRDFPGSP 264
            ++TP W  +  +  IY ++  L    G   HVDHIVPL S +VCGLHC  NLQII  +EN  K+NR +P  P
Sbjct:  137 RSTPLWANKEAIIDIYKKSRELSQATGVEHHVDHIVPLQSDVVCGLHCEANLQIIDAKENIRKNNRWWPDMP 208          
BLAST of mRNA_P-canaliculata_contig101631.253.1 vs. uniprot
Match: UPI00114EC397 (HNH endonuclease n=1 Tax=Bordetella hinzii TaxID=103855 RepID=UPI00114EC397)

HSP 1 Score: 68.9 bits (167), Expect = 2.860e-12
Identity = 35/72 (48.61%), Postives = 43/72 (59.72%), Query Frame = 1
Query:   52 KATPRWETRARLATIYDRATRLRNF-GARVHVDHIVPLNSPIVCGLHCLENLQIITERENYAKSNRDFPGSP 264
            +ATP W   AR+   Y     +R+  G    VDHIVPL S IVCGLHC ENLQ++T +EN  K N  +P  P
Sbjct:  139 RATPPWADLARINQFYADVAFMRSATGIAYEVDHIVPLQSDIVCGLHCEENLQVLTAKENKVKHNTQWPDMP 210          
BLAST of mRNA_P-canaliculata_contig101631.253.1 vs. uniprot
Match: A0A4R6FM78_9SPHN (Uncharacterized protein n=1 Tax=Stakelama pacifica TaxID=517720 RepID=A0A4R6FM78_9SPHN)

HSP 1 Score: 68.2 bits (165), Expect = 4.060e-12
Identity = 35/76 (46.05%), Postives = 47/76 (61.84%), Query Frame = 1
Query:   31 EYYLQLYKATPRWETRARLATIYDRATRLRNF-GARVHVDHIVPLNSPIVCGLHCLENLQIITERENYAKSNRDFP 255
            +Y     +ATP W   +++A IY+RA+ ++   G R+HVDHIVPL   +VCGLHC  NLQI+    N AK N   P
Sbjct:  100 KYKASKLRATPPWANLSKIAAIYERASAIQAATGQRMHVDHIVPLQHELVCGLHCETNLQILPGSLNEAKRNNWSP 175          
BLAST of mRNA_P-canaliculata_contig101631.253.1 vs. uniprot
Match: UPI0012D8F65E (hypothetical protein n=1 Tax=Burkholderia territorii TaxID=1503055 RepID=UPI0012D8F65E)

HSP 1 Score: 67.8 bits (164), Expect = 5.510e-12
Identity = 34/72 (47.22%), Postives = 42/72 (58.33%), Query Frame = 1
Query:   52 KATPRWETRARLATIYDRATRLRNFGAR-VHVDHIVPLNSPIVCGLHCLENLQIITERENYAKSNRDFPGSP 264
            +ATP+W  + ++   Y  A RL     R  HVDH+VPL S IVCGLH   NLQ+I   EN  K NR +P  P
Sbjct:  117 RATPKWANQDKIEEFYKEAERLSKIHYRHYHVDHVVPLRSKIVCGLHWEGNLQVIPAEENIRKGNRHWPDMP 188          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig101631.253.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
X5HZS3_BPKP25.830e-1648.35Uncharacterized protein n=1 Tax=Pseudomonas phage ... [more]
UPI0011AF68F81.170e-1345.88hypothetical protein n=1 Tax=Ralstonia mannitolily... [more]
UPI00117B12592.010e-1347.22hypothetical protein n=1 Tax=Fimbriiglobus ruber T... [more]
UPI001D8F42D84.790e-1350.00hypothetical protein n=1 Tax=Paraburkholderia gard... [more]
A0A1Y0FK34_RALSL4.960e-1345.83Uncharacterized protein n=1 Tax=Ralstonia solanace... [more]
A0A6M3M5T4_9ZZZZ1.080e-1245.83Uncharacterized protein n=1 Tax=viral metagenome T... [more]
UPI0012FCAECB1.980e-1247.22hypothetical protein n=1 Tax=Curvibacter lanceolat... [more]
UPI00114EC3972.860e-1248.61HNH endonuclease n=1 Tax=Bordetella hinzii TaxID=1... [more]
A0A4R6FM78_9SPHN4.060e-1246.05Uncharacterized protein n=1 Tax=Stakelama pacifica... [more]
UPI0012D8F65E5.510e-1247.22hypothetical protein n=1 Tax=Burkholderia territor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig101631contigP-canaliculata_contig101631:733..1008 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score64.7
Seed ortholog evalue2.6e-08
Seed eggNOG ortholog292.DM42_4055
EggNOG OGs1KB80@119060,1NBJS@1224,29F88@1,2VWHK@28216,3025X@2
Best tax levelBurkholderiaceae
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size276
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815589.5417445-CDS-P-canaliculata_contig101631:732..10081622815589.5417445-CDS-P-canaliculata_contig101631:732..1008Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101631 733..1008 +
1693494153.597327-CDS-P-canaliculata_contig101631:732..10081693494153.597327-CDS-P-canaliculata_contig101631:732..1008Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101631 733..1008 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig101631.253.1prot_P-canaliculata_contig101631.253.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig101631 733..1008 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig101631.253.1

>prot_P-canaliculata_contig101631.253.1 ID=prot_P-canaliculata_contig101631.253.1|Name=mRNA_P-canaliculata_contig101631.253.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=92bp
SFTRNQLRAREYYLQLYKATPRWETRARLATIYDRATRLRNFGARVHVDH
IVPLNSPIVCGLHCLENLQIITERENYAKSNRDFPGSPFEQL
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mRNA from alignment at P-canaliculata_contig101631:733..1008+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig101631.253.1 ID=mRNA_P-canaliculata_contig101631.253.1|Name=mRNA_P-canaliculata_contig101631.253.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=276bp|location=Sequence derived from alignment at P-canaliculata_contig101631:733..1008+ (Pelvetia canaliculata dioecious)
AGCTTTACCCGGAACCAGCTTCGGGCGCGGGAATACTATTTACAACTTTA TAAGGCAACGCCGCGGTGGGAGACGCGCGCTCGGTTAGCGACGATTTACG ACCGGGCGACGCGTTTAAGGAACTTCGGCGCGCGGGTACACGTCGACCAT ATCGTGCCGTTAAATAGCCCGATAGTTTGCGGGTTGCATTGTTTAGAGAA TTTACAAATTATTACCGAGCGCGAGAACTACGCGAAGAGTAACCGGGATT TCCCCGGCTCGCCCTTCGAGCAACTT
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Coding sequence (CDS) from alignment at P-canaliculata_contig101631:733..1008+

>mRNA_P-canaliculata_contig101631.253.1 ID=mRNA_P-canaliculata_contig101631.253.1|Name=mRNA_P-canaliculata_contig101631.253.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=552bp|location=Sequence derived from alignment at P-canaliculata_contig101631:733..1008+ (Pelvetia canaliculata dioecious)
AGCTTTACCCGGAACCAGCTTCGGGCGCGGGAATACTATTTACAACTTTA
TAAGGCAACGCCGCGGTGGGAGACGCGCGCTCGGTTAGCGACGATTTACG
ACCGGGCGACGCGTTTAAGGAACTTCGGCGCGCGGGTACACGTCGACCAT
ATCGTGCCGTTAAATAGCCCGATAGTTTGCGGGTTGCATTGTTTAGAGAA
TTTACAAATTATTACCGAGCGCGAGAACTACGCGAAGAGTAACCGGGATT
TCCCCGGCTCGCCCTTCGAGCAACTTAGCTTTACCCGGAACCAGCTTCGG
GCGCGGGAATACTATTTACAACTTTATAAGGCAACGCCGCGGTGGGAGAC
GCGCGCTCGGTTAGCGACGATTTACGACCGGGCGACGCGTTTAAGGAACT
TCGGCGCGCGGGTACACGTCGACCATATCGTGCCGTTAAATAGCCCGATA
GTTTGCGGGTTGCATTGTTTAGAGAATTTACAAATTATTACCGAGCGCGA
GAACTACGCGAAGAGTAACCGGGATTTCCCCGGCTCGCCCTTCGAGCAAC
TT
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