mRNA_P-canaliculata_contig101631.251.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig101631.251.1
Unique NamemRNA_P-canaliculata_contig101631.251.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig101631.251.1 vs. uniprot
Match: A0A2D6AIZ9_9BACT (Uncharacterized protein n=1 Tax=Flammeovirgaceae bacterium TaxID=2026740 RepID=A0A2D6AIZ9_9BACT)

HSP 1 Score: 99.0 bits (245), Expect = 1.890e-24
Identity = 45/67 (67.16%), Postives = 54/67 (80.60%), Query Frame = 1 
Query:   34 VSHLGMHCSEEELLYWKFFFANRKIRIAQEVFTETHSNPFVAGKSWYNYVIFDTYDILGVDIKFIVR 234
            VSHLGMHC+ EEL+ W+ FF  R I +AQEV T++H+NP +AGK  YNYVIFDT  ILGVD+KFIVR
Sbjct:   89 VSHLGMHCTSEELISWRKFFEERDIAVAQEVLTDSHTNPVIAGKRSYNYVIFDTRYILGVDLKFIVR 155
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BLAST of mRNA_P-canaliculata_contig101631.251.1 vs. uniprot
Match: A0A5B9NI12_9CAUD (Uncharacterized protein n=2 Tax=Myosmarvirus TaxID=2843428 RepID=A0A5B9NI12_9CAUD)

HSP 1 Score: 99.0 bits (245), Expect = 2.510e-24
Identity = 46/73 (63.01%), Postives = 57/73 (78.08%), Query Frame = 1 
Query:   22 HEPRVSHLGMHCSEEELLYWKFFFANRKIRIAQEVFTETHSNPFVAGKSWYNYVIFDTYDILGVDIKFIVRKD 240
            H+ +VSHLGMH S EEL+ W+ FFA   I++AQEV TE+H+NP +     YNYVIFDT DI+GVD+KFIVRKD
Sbjct:  103 HDNQVSHLGMHVSAEELVQWRDFFAAEGIQVAQEVNTESHTNPAIKDTRRYNYVIFDTRDIIGVDLKFIVRKD 175
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BLAST of mRNA_P-canaliculata_contig101631.251.1 vs. uniprot
Match: A0A482MII6_9CAUD (Glyoxalase/bleomycin resistance protein/dihydroxybiphenyl dioxygenase-like superfamily protein n=2 Tax=Myosmarvirus TaxID=2843428 RepID=A0A482MII6_9CAUD)

HSP 1 Score: 96.7 bits (239), Expect = 2.010e-23
Identity = 45/73 (61.64%), Postives = 55/73 (75.34%), Query Frame = 1 
Query:   22 HEPRVSHLGMHCSEEELLYWKFFFANRKIRIAQEVFTETHSNPFVAGKSWYNYVIFDTYDILGVDIKFIVRKD 240
            H  +VSHLGMH S EEL+ W+ FFA   I++AQEV TE+H+NP +     YNYVIFDT  I+GVD+KFIVRKD
Sbjct:  103 HNNQVSHLGMHVSAEELVQWRAFFAAEDIQVAQEVNTESHTNPAIKDSRRYNYVIFDTRGIIGVDLKFIVRKD 175
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BLAST of mRNA_P-canaliculata_contig101631.251.1 vs. uniprot
Match: A0A514A8N1_9CAUD (Uncharacterized protein n=1 Tax=Panteoa phage Kyle TaxID=2589665 RepID=A0A514A8N1_9CAUD)

HSP 1 Score: 94.4 bits (233), Expect = 1.820e-22
Identity = 43/78 (55.13%), Postives = 58/78 (74.36%), Query Frame = 1 
Query:    1 GNAWMHFHEPRVSHLGMHCSEEELLYWKFFFANRKIRIAQEVFTETHSNPFVAGKSWYNYVIFDTYDILGVDIKFIVR 234
            GN W+      VSHLGMH + +ELL ++ +FA++ + IAQEV T+TH+N  +  +  YNYVIFDTYD+LGVD+KFIVR
Sbjct:   86 GNNWLENRPHCVSHLGMHVTNDELLSYRAYFASKGVAIAQEVMTQTHTNEAIKDERRYNYVIFDTYDLLGVDLKFIVR 163
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BLAST of mRNA_P-canaliculata_contig101631.251.1 vs. uniprot
Match: A0A3S7L8V4_9CAUD (Uncharacterized protein n=4 Tax=Carpasinavirus TaxID=2733099 RepID=A0A3S7L8V4_9CAUD)

HSP 1 Score: 93.6 bits (231), Expect = 2.710e-22
Identity = 43/78 (55.13%), Postives = 56/78 (71.79%), Query Frame = 1 
Query:    1 GNAWMHFHEPRVSHLGMHCSEEELLYWKFFFANRKIRIAQEVFTETHSNPFVAGKSWYNYVIFDTYDILGVDIKFIVR 234
            GN WM       SHLGMH + E+L  ++ FFA+  I +AQEVFT++H+NP +     YNYVIFDT+DILG+D+KFIVR
Sbjct:   88 GNNWMAHRPHCASHLGMHVTAEKLADFRAFFASEGIAVAQEVFTDSHTNPHIKDSRRYNYVIFDTFDILGIDLKFIVR 165
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BLAST of mRNA_P-canaliculata_contig101631.251.1 vs. uniprot
Match: UPI001B800992 (hypothetical protein n=1 Tax=Xanthomonas pisi TaxID=56457 RepID=UPI001B800992)

HSP 1 Score: 90.5 bits (223), Expect = 3.860e-22
Identity = 43/75 (57.33%), Postives = 56/75 (74.67%), Query Frame = 1 
Query:   31 RVSHLGMHCSEEELLYWKFFFANRKIRIAQEVFTETHSNPFVAGKSWYNYVIFDTYDILGVDIKFIVR--KDAAP 249
            +VSHLGMH +  EL  W+ FF    I++AQEV T++H+NP +AGK  YNYVIFDT +I+GVD+KFIVR  +D  P
Sbjct:    1 QVSHLGMHVTAAELAEWRQFFNEEGIQVAQEVVTDSHTNPNIAGKRRYNYVIFDTREIIGVDLKFIVRLNQDGPP 75
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BLAST of mRNA_P-canaliculata_contig101631.251.1 vs. uniprot
Match: I6ZXZ1_9CAUD (Uncharacterized protein n=7 Tax=Wifcevirus TaxID=2733141 RepID=I6ZXZ1_9CAUD)

HSP 1 Score: 92.8 bits (229), Expect = 7.630e-22
Identity = 43/78 (55.13%), Postives = 58/78 (74.36%), Query Frame = 1 
Query:   22 HEPRVSHLGMHCSEEELLYWKFFFANRKIRIAQEVFTETHSNPFVAGKSWYNYVIFDTYDILGVDIKFIVR--KDAAP 249
            H+ +VSHLGMH +  EL  W+ FF    I++AQEV T++H+NP +AG+  YNYVIFDT +I+GVD+KFIVR  +D  P
Sbjct:  103 HDNQVSHLGMHVTAAELAEWRKFFKEEGIQVAQEVVTDSHTNPNIAGQRRYNYVIFDTREIIGVDLKFIVRLNQDGTP 180
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig101631.251.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A2D6AIZ9_9BACT1.890e-2467.16Uncharacterized protein n=1 Tax=Flammeovirgaceae b... [more]
A0A5B9NI12_9CAUD2.510e-2463.01Uncharacterized protein n=2 Tax=Myosmarvirus TaxID... [more]
A0A482MII6_9CAUD2.010e-2361.64Glyoxalase/bleomycin resistance protein/dihydroxyb... [more]
A0A514A8N1_9CAUD1.820e-2255.13Uncharacterized protein n=1 Tax=Panteoa phage Kyle... [more]
A0A3S7L8V4_9CAUD2.710e-2255.13Uncharacterized protein n=4 Tax=Carpasinavirus Tax... [more]
UPI001B8009923.860e-2257.33hypothetical protein n=1 Tax=Xanthomonas pisi TaxI... [more]
I6ZXZ1_9CAUD7.630e-2255.13Uncharacterized protein n=7 Tax=Wifcevirus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig101631contigP-canaliculata_contig101631:6..260 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size255
Cds size243
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815589.4518647-UTR-P-canaliculata_contig101631:5..171622815589.4518647-UTR-P-canaliculata_contig101631:5..17Pelvetia canaliculata dioeciousUTRP-canaliculata_contig101631 6..17 +
1693494153.5511596-UTR-P-canaliculata_contig101631:5..171693494153.5511596-UTR-P-canaliculata_contig101631:5..17Pelvetia canaliculata dioeciousUTRP-canaliculata_contig101631 6..17 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815589.4652936-CDS-P-canaliculata_contig101631:17..2601622815589.4652936-CDS-P-canaliculata_contig101631:17..260Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101631 18..260 +
1693494153.561086-CDS-P-canaliculata_contig101631:17..2601693494153.561086-CDS-P-canaliculata_contig101631:17..260Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101631 18..260 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig101631.251.1prot_P-canaliculata_contig101631.251.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig101631 18..260 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig101631.251.1

>prot_P-canaliculata_contig101631.251.1 ID=prot_P-canaliculata_contig101631.251.1|Name=mRNA_P-canaliculata_contig101631.251.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=81bp
MHFHEPRVSHLGMHCSEEELLYWKFFFANRKIRIAQEVFTETHSNPFVAG
KSWYNYVIFDTYDILGVDIKFIVRKDAAPE*
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mRNA from alignment at P-canaliculata_contig101631:6..260+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig101631.251.1 ID=mRNA_P-canaliculata_contig101631.251.1|Name=mRNA_P-canaliculata_contig101631.251.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=255bp|location=Sequence derived from alignment at P-canaliculata_contig101631:6..260+ (Pelvetia canaliculata dioecious)
GGTAACGCGTGGATGCACTTTCACGAGCCGCGCGTTAGTCACCTCGGCAT
GCATTGTTCGGAAGAGGAGTTGTTGTATTGGAAATTCTTTTTTGCTAATC
GGAAAATCAGAATTGCGCAAGAGGTCTTTACCGAAACGCACTCGAATCCG
TTTGTCGCCGGGAAGAGCTGGTACAACTATGTTATATTCGACACTTACGA
TATTCTCGGCGTCGACATAAAGTTTATCGTCCGTAAAGACGCTGCGCCGG
AGTAG
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Coding sequence (CDS) from alignment at P-canaliculata_contig101631:6..260+

>mRNA_P-canaliculata_contig101631.251.1 ID=mRNA_P-canaliculata_contig101631.251.1|Name=mRNA_P-canaliculata_contig101631.251.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at P-canaliculata_contig101631:6..260+ (Pelvetia canaliculata dioecious)
ATGCACTTTCACGAGCCGCGCGTTAGTCACCTCGGCATGCATTGTTCGGA
AGAGGAGTTGTTGTATTGGAAATTCTTTTTTGCTAATCGGAAAATCAGAA
TTGCGCAAGAGGTCTTTACCGAAACGCACTCGAATCCGTTTGTCGCCGGG
AAGAGCTGGTACAACTATGTTATATTCGACACTTACGATATTCTCGGCGT
CGACATAAAGTTTATCGTCCGTAAAGACGCTGCGCCGGAGTAGATGCACT
TTCACGAGCCGCGCGTTAGTCACCTCGGCATGCATTGTTCGGAAGAGGAG
TTGTTGTATTGGAAATTCTTTTTTGCTAATCGGAAAATCAGAATTGCGCA
AGAGGTCTTTACCGAAACGCACTCGAATCCGTTTGTCGCCGGGAAGAGCT
GGTACAACTATGTTATATTCGACACTTACGATATTCTCGGCGTCGACATA
AAGTTTATCGTCCGTAAAGACGCTGCGCCGGAGTAG
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