mRNA_P-canaliculata_contig1016.248.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig1016.248.1
Unique NamemRNA_P-canaliculata_contig1016.248.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
[Close]
BLAST of mRNA_P-canaliculata_contig1016.248.1 vs. uniprot
Match: A0A6H5KBQ9_9PHAE (PHB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KBQ9_9PHAE)

HSP 1 Score: 488 bits (1255), Expect = 3.860e-170
Identity = 252/288 (87.50%), Postives = 270/288 (93.75%), Query Frame = 2 
Query:    8 MAFCLQCVPNAEVGVIERLGKFQDLAQPGLNCVFWPIDVIVARISTRVQQLDVRMETKTRDNVFVTAVVSVQYQPIKEKVYDAYYRLTDPQAQIRSYVYDVVRSTLPKLDLDQAFDSKEDIAIAVKNQLEQVMAEYGYQILQALVTDMDPDRRVKEAMNEINASKRLREAATNKAEADKIMQVKAAEAEAESKYLSGVGVSRQRKAIVDGLRDSVVTFSEKISGTSPKDVMDLLLLTQYFDMLRDVGQSSRSSTVFLPHAPQSVEALQSAMRNGFMQGNAGQAGIAGA 871
            MA C QC+PNAE+GVIERLGK+Q LAQPG  C+ WP+D IVA++STRVQQLDVRMETKT+DNVFVTAVVSVQYQPIK K+YDA+YRLTDP+AQIRSYVYDVVRSTLPKLDLDQAFDSKEDIAIAVKNQLE+VM EYGYQILQALVTDMDPD RVK AMNEINASKRLREAATNKAEADKIMQVKAAEAEAESKYLSGVGVSRQRKAIVDGLRDSV TFSE I GTSPKDVMDLLLLTQYFDMLRDVGQSSR++TVFLPHAPQSV +LQSAMR+GFMQG+AG  G+A A
Sbjct:   72 MACCFQCIPNAEIGVIERLGKYQGLAQPGFTCIMWPLDSIVAKLSTRVQQLDVRMETKTKDNVFVTAVVSVQYQPIKSKIYDAFYRLTDPKAQIRSYVYDVVRSTLPKLDLDQAFDSKEDIAIAVKNQLEEVMQEYGYQILQALVTDMDPDARVKGAMNEINASKRLREAATNKAEADKIMQVKAAEAEAESKYLSGVGVSRQRKAIVDGLRDSVQTFSETIDGTSPKDVMDLLLLTQYFDMLRDVGQSSRAATVFLPHAPQSVASLQSAMRDGFMQGHAGSEGLASA 359
[Close]
BLAST of mRNA_P-canaliculata_contig1016.248.1 vs. uniprot
Match: D8LDT1_ECTSI (PHB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDT1_ECTSI)

HSP 1 Score: 486 bits (1250), Expect = 1.090e-168
Identity = 252/292 (86.30%), Postives = 270/292 (92.47%), Query Frame = 2 
Query:    8 MAFCLQCVPNAEVGVIERLGKFQDLAQPGLNCVFWPIDVIVARISTRVQQLDVRMETKTRDNVFVTAVVSVQYQPIKEKVYDAYYRLTDPQAQIRSYVYDVVRSTLPKLDLDQAFDSKEDIAIAVKNQLEQVMAEYGYQILQALVTDMDPDRRVKEAMNEINASKRLREAATNKAEADKIMQVKAAEAEAESKYLSGVGVSRQRKAIVDGLRDSVVTFSEKISGTSPKDVMDLLLLTQYFDMLRDVGQSSRSSTVFLPHAPQSVEALQSAMRNGFMQGNAGQAGIAGASQQQ 883
            MAFC QCV N+EVGV+ERLGKF  LA PGLNC+ WPIDVIVA+ISTRVQQLDVRMETKT+DNVFVTAVVSVQYQPIKEK+YDA+YRLTDPQAQIRSYV+DVVRSTLPKLDLDQAFDSKEDIA+AVKNQLE+VM EYGYQILQALVTDMDPD RVKEAMNEINASKR+REAATNKAEADKIMQVKAAEAEAESKYLSGVGVSRQRKAIVDGLRDSV  F+E I GTSPKDVMDLLLLTQYFDMLRDVGQSSR++TVFLPHAPQSV A+Q+AMR+GFMQG AG       + QQ
Sbjct:  113 MAFCFQCVSNSEVGVVERLGKFTGLAAPGLNCILWPIDVIVAKISTRVQQLDVRMETKTKDNVFVTAVVSVQYQPIKEKIYDAFYRLTDPQAQIRSYVFDVVRSTLPKLDLDQAFDSKEDIAVAVKNQLEEVMKEYGYQILQALVTDMDPDPRVKEAMNEINASKRMREAATNKAEADKIMQVKAAEAEAESKYLSGVGVSRQRKAIVDGLRDSVQNFAEAIDGTSPKDVMDLLLLTQYFDMLRDVGQSSRAATVFLPHAPQSVAAIQAAMRDGFMQGQAGSTETPPPNMQQ 404
[Close]
BLAST of mRNA_P-canaliculata_contig1016.248.1 vs. uniprot
Match: A0A835YL74_9STRA (Flagellar associated protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL74_9STRA)

HSP 1 Score: 408 bits (1049), Expect = 6.070e-140
Identity = 210/280 (75.00%), Postives = 245/280 (87.50%), Query Frame = 2 
Query:   17 CLQCVPNAEVGVIERLGKFQDLAQPGLNCVFWPIDVIVARISTRVQQLDVRMETKTRDNVFVTAVVSVQYQPIKEKVYDAYYRLTDPQAQIRSYVYDVVRSTLPKLDLDQAFDSKEDIAIAVKNQLEQVMAEYGYQILQALVTDMDPDRRVKEAMNEINASKRLREAATNKAEADKIMQVKAAEAEAESKYLSGVGVSRQRKAIVDGLRDSVVTFSEKISGTSPKDVMDLLLLTQYFDMLRDVGQSSRSSTVFLPHAPQSVEALQSAMRNGFMQGNAGQA 856
            C  CV  +EVGV+ER G+F+ LA+PGL+ VFWP+  +V  ISTRVQQLDV+ ETKT DNVF+T  V VQYQ + +KVYDA+YRLTDP++QIRSYVYDV+RST+PKL+LDQAF +KE++A AVK QL  VM EYGYQILQALVTD++PDRRVK+AMNEINASKRLREAATNKAEADKIMQVKAAEAEAESKYLSGVGVSRQR+AIV GLRDS+  FS  I GT+PKDVMDLLLLTQYFDMLRD+GQS++SST+FLPHAP+SV +LQ AMR+GFMQ  A +A
Sbjct:    7 CCICVQTSEVGVVERFGQFEKLAKPGLSLVFWPLSQVVGTISTRVQQLDVQAETKTSDNVFITVNVCVQYQVLYDKVYDAFYRLTDPKSQIRSYVYDVIRSTMPKLELDQAFAAKEEVAHAVKEQLTVVMQEYGYQILQALVTDLEPDRRVKDAMNEINASKRLREAATNKAEADKIMQVKAAEAEAESKYLSGVGVSRQRQAIVAGLRDSIHDFSSSIEGTTPKDVMDLLLLTQYFDMLRDIGQSTKSSTIFLPHAPESVASLQGAMRDGFMQAAAAKA 286
[Close]
BLAST of mRNA_P-canaliculata_contig1016.248.1 vs. uniprot
Match: A0A6S8S5L6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8S5L6_9STRA)

HSP 1 Score: 344 bits (882), Expect = 1.090e-114
Identity = 173/275 (62.91%), Postives = 222/275 (80.73%), Query Frame = 2 
Query:   14 FCLQCVPNAEVGVIERLGKFQDLAQPGLNCVFWPIDVIVARISTRVQQLDVRMETKTRDNVFVTAVVSVQYQPIKEKVYDAYYRLTDPQAQIRSYVYDVVRSTLPKLDLDQAFDSKEDIAIAVKNQLEQVMAEYGYQILQALVTDMDPDRRVKEAMNEINASKRLREAATNKAEADKIMQVKAAEAEAESKYLSGVGVSRQRKAIVDGLRDSVVTFSEKISGTSPKDVMDLLLLTQYFDMLRDVGQS-SRSSTVFLPHAPQSVEALQSAMRNGFM 835
            FCL CV    V ++ER GKFQ +  PG  C+ WP+D IV R+S RV+QLDV  ETKT+DNVFV  V+SVQYQ + EK +DA+Y+L +P+ QI++YV+DVVRS LPK++LD++F +KE +A  VK+ L++ M  +GY I++ALVTD+ PD RVK +MNEINAS+RLREAA  KAEADKI+QVKAAEA+AESKYLSGVGV+RQR+AIV GL+DS++ FS +I+GT+PKDVMDLLLLTQYFDML+DVG S S   T+FLPHAP +V  LQ +++NG M
Sbjct:    7 FCLACVRTNTVALVERCGKFQAIKGPGCQCLVWPVDSIVGRVSLRVRQLDVNCETKTKDNVFVNVVISVQYQVVLEKAFDAFYKLANPEIQIQAYVFDVVRSELPKMELDESFSNKEQLANEVKHHLDETMMSFGYSIIKALVTDISPDARVKMSMNEINASRRLREAAKEKAEADKIVQVKAAEADAESKYLSGVGVARQRQAIVGGLQDSIIEFSGEIAGTTPKDVMDLLLLTQYFDMLKDVGSSGSGGKTLFLPHAPSAVGDLQDSLKNGLM 281
[Close]
BLAST of mRNA_P-canaliculata_contig1016.248.1 vs. uniprot
Match: A0A7S1V9W2_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V9W2_9STRA)

HSP 1 Score: 338 bits (866), Expect = 2.440e-112
Identity = 171/268 (63.81%), Postives = 218/268 (81.34%), Query Frame = 2 
Query:   17 CLQCVPNAEVGVIERLGKFQDLAQPGLNCVFWPIDVIVARISTRVQQLDVRMETKTRDNVFVTAVVSVQYQPIKEKVYDAYYRLTDPQAQIRSYVYDVVRSTLPKLDLDQAFDSKEDIAIAVKNQLEQVMAEYGYQILQALVTDMDPDRRVKEAMNEINASKRLREAATNKAEADKIMQVKAAEAEAESKYLSGVGVSRQRKAIVDGLRDSVVTFSEKISGTSPKDVMDLLLLTQYFDMLRDVGQSSRSSTVFLPHAPQSVEALQSAM 820
            C   V  AEVGV+ER GKF  L QPGLNCV  P++V+V R+S RVQQLDVR+ETKT DNVF+TAVVSVQYQ ++EKVYDA+Y LT+P  QI ++VYDVVRS LP L+LD  F++KE++A+AVKN L + M  YGYQILQ L+TD+DPD RVK AMNEIN+SKRL+ A   +AE DKI+QVKAAEAE+E+KYLSGVGV++QRKAIVDGL++S+V FS+++ G+S K VMDLLLLTQYFDM+RDVG ++   T F+P +  S + +++A+
Sbjct:    5 CFFTVSTAEVGVVERFGKFSRLVQPGLNCVVCPVEVLVGRLSFRVQQLDVRVETKTLDNVFITAVVSVQYQILREKVYDAFYALTNPTQQITAHVYDVVRSELPLLELDAVFEAKEELALAVKNALSETMGAYGYQILQTLITDLDPDNRVKAAMNEINSSKRLKFAVAERAEGDKILQVKAAEAESEAKYLSGVGVAKQRKAIVDGLKNSIVDFSQEVEGSSTKQVMDLLLLTQYFDMVRDVGAANHCRTTFVPSSKSSGDDVRNAL 272
[Close]
BLAST of mRNA_P-canaliculata_contig1016.248.1 vs. uniprot
Match: A0A7S4NF76_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NF76_9STRA)

HSP 1 Score: 329 bits (844), Expect = 4.910e-109
Identity = 169/277 (61.01%), Postives = 216/277 (77.98%), Query Frame = 2 
Query:   17 CLQCVPNAEVGVIERLGKFQDLAQPGLNCVFWPIDVIVARISTRVQQLDVRMETKTRDNVFVTAVVSVQYQPIKEKVYDAYYRLTDPQAQIRSYVYDVVRSTLPKLDLDQAFDSKEDIAIAVKNQLEQVMAEYGYQILQALVTDMDPDRRVKEAMNEINASKRLREAATNKAEADKIMQVKAAEAEAESKYLSGVGVSRQRKAIVDGLRDSVVTFSEKISGTSPKDVMDLLLLTQYFDMLRDVGQSSRSSTVFLPHAPQSVEALQSAMRNGFMQGNA 847
            C   +  +EVG+IER GK+  LA PGL CV  P DV+V R+S RVQQ+DVR+ETKT DNVF+TA VSVQYQ ++EKV++A+Y LT+   QI S++YDV+R+ LP L+LD  F++KED+A+AVKN L + M+ YGYQILQAL+TD+DPD+RVK AMNEIN+SKRL+ A   +AE DKI++VK+AEAEAE+KYLSGVGV++QRKAIVDGLR S+V FS+ + GTS KD+MDLLLLTQYFD +RDVGQ S   T F+P    S  +    MRN  +Q +A
Sbjct:    5 CFFTISTSEVGIIERFGKYSRLAHPGLGCVACPADVLVGRMSFRVQQIDVRVETKTLDNVFITATVSVQYQVLREKVFEAFYALTNAHQQITSHIYDVMRAQLPTLELDAVFEAKEDLALAVKNALSETMSLYGYQILQALITDLDPDQRVKNAMNEINSSKRLKFAVAERAEGDKILKVKSAEAEAEAKYLSGVGVAKQRKAIVDGLRTSIVDFSDGVKGTSSKDIMDLLLLTQYFDCIRDVGQESHCKTTFVP----SSRSAGDDMRNALLQADA 277
[Close]
BLAST of mRNA_P-canaliculata_contig1016.248.1 vs. uniprot
Match: A0A7S2BRL8_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BRL8_9STRA)

HSP 1 Score: 325 bits (834), Expect = 1.970e-107
Identity = 168/280 (60.00%), Postives = 218/280 (77.86%), Query Frame = 2 
Query:   17 CLQCVPNAEVGVIERLGKFQDLAQPGLNCVFWPIDVIVARISTRVQQLDVRMETKTRDNVFVTAVVSVQYQPIKEKVYDAYYRLTDPQAQIRSYVYDVVRSTLPKLDLDQAFDSKEDIAIAVKNQLEQVMAEYGYQILQALVTDMDPDRRVKEAMNEINASKRLREAATNKAEADKIMQVKAAEAEAESKYLSGVGVSRQRKAIVDGLRDSVVTFSEKISGTSPKDVMDLLLLTQYFDMLRDVGQSSRSSTVFLPHAPQSVEALQSAMRNGFMQGNAGQA 856
            C+QC+  +E+G++ERLGK+  L   G+N    PI+ +  ++S RVQ LDVR ETKT DNVFV   VSVQYQ  K+K+YDA+YRL++P  QIR+YV+D+VRS LP + LD+AF++KE +A+ VK  L  VM EYG+ I+QALVTD+ PD +VK AMNEINASKR++EAA+ KAEADK++ VKAAEA+AESKYLSGVGV+RQRKAIVDGLRDS+  FS  + GT+PKDV+DLLLLTQYFDML++VG    ++TVFLP    S  A  ++MR+  +Q  AGQ+
Sbjct:    7 CVQCIQTSEIGIVERLGKYDRLQNAGINFFCCPIEYLAGKVSLRVQALDVRCETKTEDNVFVEVNVSVQYQVQKDKIYDAFYRLSNPTQQIRAYVFDIVRSVLPAMPLDEAFEAKEHVALEVKKALSAVMDEYGFVIVQALVTDIAPDAKVKNAMNEINASKRMKEAASEKAEADKVLLVKAAEADAESKYLSGVGVARQRKAIVDGLRDSIKQFSGNVQGTTPKDVIDLLLLTQYFDMLKEVGNHEYTATVFLP----SESANGTSMRDSLLQAQAGQS 282
[Close]
BLAST of mRNA_P-canaliculata_contig1016.248.1 vs. uniprot
Match: W7TM34_9STRA (Hypersensitive-induced response protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TM34_9STRA)

HSP 1 Score: 325 bits (833), Expect = 2.610e-107
Identity = 165/277 (59.57%), Postives = 210/277 (75.81%), Query Frame = 2 
Query:   17 CLQCVPNAEVGVIERLGKFQDLAQPGLNCVFWPIDVIVARISTRVQQLDVRMETKTRDNVFVTAVVSVQYQPIKEKVYDAYYRLTDPQAQIRSYVYDVVRSTLPKLDLDQAFDSKEDIAIAVKNQLEQVMAEYGYQILQALVTDMDPDRRVKEAMNEINASKRLREAATNKAEADKIMQVKAAEAEAESKYLSGVGVSRQRKAIVDGLRDSVVTFSEKISGTSPKDVMDLLLLTQYFDMLRDVGQSSRSSTVFLPHAPQSVEALQSAMRNGFMQGNA 847
            CLQC+  + +G+ ER G F  +  PG+N + WPID +V R+S RVQQL     TKT+DNVFV   V VQYQ I  + YDAYY+LTDP  QIRSYV D+VRST+PK++LD AF++KE++A A+++ L+Q M  YGY I+Q+LV D+  D +VK AMNEINASKRLREAA  KAEADKI+QVKAAEA AESKYL+G+G++R+RKAIVDGLR SV  FSE + G +PKDVMDL+LLTQYFDML+DVG +   +T+F+ H P +V  L+  +R G MQ  A
Sbjct:    7 CLQCIDTSTLGIQERFGNFVRILPPGMNLICWPIDNVVGRVSARVQQLVCDCGTKTKDNVFVAVQVIVQYQVIVSQAYDAYYKLTDPNLQIRSYVEDIVRSTVPKMELDMAFEAKEELAHAIRDSLQQTMGTYGYTIIQSLVLDIRVDEKVKTAMNEINASKRLREAAAEKAEADKIVQVKAAEASAESKYLNGMGIARERKAIVDGLRGSVEEFSETVEGATPKDVMDLILLTQYFDMLKDVGNNPTPTTLFMTHGPSAVTELKEQLRAGIMQNAA 283
[Close]
BLAST of mRNA_P-canaliculata_contig1016.248.1 vs. uniprot
Match: B7FXB1_PHATC (Predicted protein n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FXB1_PHATC)

HSP 1 Score: 325 bits (832), Expect = 3.230e-107
Identity = 167/281 (59.43%), Postives = 216/281 (76.87%), Query Frame = 2 
Query:    8 MAFCLQCVPNAEVGVIERLGKFQDLAQPGLNCVFWPIDVIVARISTRVQQLDVRMETKTRDNVFVTAVVSVQYQPIKEKVYDAYYRLTDPQAQIRSYVYDVVRSTLPKLDLDQAFDSKEDIAIAVKNQLEQVMAEYGYQILQALVTDMDPDRRVKEAMNEINASKRLREAATNKAEADKIMQVKAAEAEAESKYLSGVGVSRQRKAIVDGLRDSVVTFSEKISGTSPKDVMDLLLLTQYFDMLRDVGQSSRSSTVFLPHAPQSVEALQSAMRNGFMQGNAG 850
            M  C   +  AEVGVIER GK+  L QPGLN +  P++ +V ++S RVQQL+VR+ETKT DNVF+T+VVSVQYQ +++KVY+A+Y L++P  QI ++VYDV+RS LP L+LD  F++KED+A+AVKN L ++M  YGYQI+Q L+TD+DPD+RVK AMNEIN+SKRL+ A   +AE DKI++VK AEAEAE+KYLSGVGV++QRKAIVDGLR S+V FS+ + G+S K+VMDLLLLTQYFDM+RDVG  S   T F+P    S       MRN  +Q  AG
Sbjct:    1 MCLCCFTISTAEVGVIERWGKYSRLVQPGLNVICCPMESLVGKLSFRVQQLNVRVETKTLDNVFITSVVSVQYQVLRDKVYEAFYALSNPARQITAHVYDVMRSQLPTLELDAVFEAKEDLALAVKNALSEIMTTYGYQIVQTLITDLDPDQRVKNAMNEINSSKRLKYAVAERAEGDKILKVKGAEAEAEAKYLSGVGVAKQRKAIVDGLRTSIVDFSDHVEGSSTKEVMDLLLLTQYFDMIRDVGAESHCKTTFVP----SSRGAPDDMRNALLQSAAG 277
[Close]
BLAST of mRNA_P-canaliculata_contig1016.248.1 vs. uniprot
Match: A0A4D9D845_9STRA (PHB domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D845_9STRA)

HSP 1 Score: 322 bits (825), Expect = 6.600e-106
Identity = 166/278 (59.71%), Postives = 212/278 (76.26%), Query Frame = 2 
Query:   17 CLQCVPNAEVGVIERLGKFQDLAQPGLNCVFWPIDVIVARISTRVQQLDVRMETKTRDNVFVTAVVSVQYQPIKEKVYDAYYRLTDPQAQIRSYVYDVVRSTLPKLDLDQAFDSKEDIAIAVKNQLEQVMAEYGYQILQALVTDMDPDRRVKEAMNEINASKRLREAATNKAEADKIMQVKAAEAEAESKYLSGVGVSRQRKAIVDGLRDSVVTFSEKISGTSPKDVMDLLLLTQYFDMLRDVGQSSRSSTVFLPHAP----QSVEALQSAMRNGFMQ 838
            C  CV   EVGV+ER  K+  L  PG+  + WP + + +R+S R+ QLD+R ETKT+DNVFV   +S+QYQ I+EKV+DA YRLT+PQ QIR+YVYDVVR+TLP++ LD+AF++K+DIA AVK  L+  M  YGY IL ALVTD++PD RVK AMNEINASKRL+EAA  +AE +KI+QVK AEA AESKYLSGVGV++QRKAIVDGLR+S++ FS  + GT+ KDVMDL+LLTQYFDML  VG +  ++TVF+PH P       E +   +RNG +Q
Sbjct:    7 CCACVSTGEVGVVERNCKYNRLGLPGITLMCWPFEAMQSRVSLRIMQLDIRAETKTKDNVFVMVYISIQYQVIREKVFDAVYRLTNPQEQIRAYVYDVVRATLPRMFLDEAFEAKDDIAHAVKASLQTCMGTYGYSILNALVTDLEPDLRVKAAMNEINASKRLKEAARERAEGEKIVQVKIAEANAESKYLSGVGVAKQRKAIVDGLRESILGFSGNVPGTTAKDVMDLMLLTQYFDMLNLVGNNPSTNTVFVPHKPALAQNGEEEVGDQVRNGMLQ 284
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig1016.248.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KBQ9_9PHAE3.860e-17087.50PHB domain-containing protein n=2 Tax=Ectocarpus T... [more]
D8LDT1_ECTSI1.090e-16886.30PHB domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835YL74_9STRA6.070e-14075.00Flagellar associated protein n=1 Tax=Tribonema min... [more]
A0A6S8S5L6_9STRA1.090e-11462.91Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S1V9W2_9STRA2.440e-11263.81Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S4NF76_9STRA4.910e-10961.01Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A7S2BRL8_9STRA1.970e-10760.00Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
W7TM34_9STRA2.610e-10759.57Hypersensitive-induced response protein n=1 Tax=Na... [more]
B7FXB1_PHATC3.230e-10759.43Predicted protein n=3 Tax=Phaeodactylum tricornutu... [more]
A0A4D9D845_9STRA6.600e-10659.71PHB domain-containing protein n=3 Tax=Monodopsidac... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig1016contigP-canaliculata_contig1016:1234..9035 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score493.0
Seed ortholog evalue9.5e-137
Seed eggNOG ortholog2880.D8LDT0
Preferred nameHIR1
KEGG koko:K03129
KEGG Pathwayko03022,ko05016,ko05168,map03022,map05016,map05168
GOsGO:0002239,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005773,GO:0005774,GO:0005794,GO:0005886,GO:0005911,GO:0008150,GO:0009506,GO:0009507,GO:0009536,GO:0009605,GO:0009607,GO:0012505,GO:0016020,GO:0019899,GO:0019900,GO:0019901,GO:0030054,GO:0031090,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043424,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0051704,GO:0051707,GO:0055044,GO:0071944,GO:0098588,GO:0098805
EggNOG free text desc.stress-induced mitochondrial fusion
EggNOG OGsCOG0330@1,KOG2620@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03021,ko03036
Hectar predicted targeting categoryother localisation
Exons10
Model size1122
Cds size888
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig1016.248.1prot_P-canaliculata_contig1016.248.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig1016 1241..8808 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815589.064072-UTR-P-canaliculata_contig1016:1233..12401622815589.064072-UTR-P-canaliculata_contig1016:1233..1240Pelvetia canaliculata dioeciousUTRP-canaliculata_contig1016 1234..1240 +
1693494153.2878602-UTR-P-canaliculata_contig1016:1233..12401693494153.2878602-UTR-P-canaliculata_contig1016:1233..1240Pelvetia canaliculata dioeciousUTRP-canaliculata_contig1016 1234..1240 +
1622815589.2021477-UTR-P-canaliculata_contig1016:8808..90351622815589.2021477-UTR-P-canaliculata_contig1016:8808..9035Pelvetia canaliculata dioeciousUTRP-canaliculata_contig1016 8809..9035 +
1693494153.4026394-UTR-P-canaliculata_contig1016:8808..90351693494153.4026394-UTR-P-canaliculata_contig1016:8808..9035Pelvetia canaliculata dioeciousUTRP-canaliculata_contig1016 8809..9035 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815589.0782945-CDS-P-canaliculata_contig1016:1240..13571622815589.0782945-CDS-P-canaliculata_contig1016:1240..1357Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1016 1241..1357 +
1693494153.2983782-CDS-P-canaliculata_contig1016:1240..13571693494153.2983782-CDS-P-canaliculata_contig1016:1240..1357Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1016 1241..1357 +
1622815589.0911124-CDS-P-canaliculata_contig1016:1907..19641622815589.0911124-CDS-P-canaliculata_contig1016:1907..1964Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1016 1908..1964 +
1693494153.3070538-CDS-P-canaliculata_contig1016:1907..19641693494153.3070538-CDS-P-canaliculata_contig1016:1907..1964Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1016 1908..1964 +
1622815589.1047704-CDS-P-canaliculata_contig1016:2758..28211622815589.1047704-CDS-P-canaliculata_contig1016:2758..2821Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1016 2759..2821 +
1693494153.3213212-CDS-P-canaliculata_contig1016:2758..28211693494153.3213212-CDS-P-canaliculata_contig1016:2758..2821Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1016 2759..2821 +
1622815589.1172068-CDS-P-canaliculata_contig1016:3376..34491622815589.1172068-CDS-P-canaliculata_contig1016:3376..3449Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1016 3377..3449 +
1693494153.3299413-CDS-P-canaliculata_contig1016:3376..34491693494153.3299413-CDS-P-canaliculata_contig1016:3376..3449Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1016 3377..3449 +
1622815589.131442-CDS-P-canaliculata_contig1016:4145..41921622815589.131442-CDS-P-canaliculata_contig1016:4145..4192Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1016 4146..4192 +
1693494153.3406262-CDS-P-canaliculata_contig1016:4145..41921693494153.3406262-CDS-P-canaliculata_contig1016:4145..4192Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1016 4146..4192 +
1622815589.142753-CDS-P-canaliculata_contig1016:5167..53561622815589.142753-CDS-P-canaliculata_contig1016:5167..5356Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1016 5168..5356 +
1693494153.3536024-CDS-P-canaliculata_contig1016:5167..53561693494153.3536024-CDS-P-canaliculata_contig1016:5167..5356Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1016 5168..5356 +
1622815589.1535368-CDS-P-canaliculata_contig1016:6666..67901622815589.1535368-CDS-P-canaliculata_contig1016:6666..6790Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1016 6667..6790 +
1693494153.3631465-CDS-P-canaliculata_contig1016:6666..67901693494153.3631465-CDS-P-canaliculata_contig1016:6666..6790Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1016 6667..6790 +
1622815589.1648643-CDS-P-canaliculata_contig1016:7207..72511622815589.1648643-CDS-P-canaliculata_contig1016:7207..7251Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1016 7208..7251 +
1693494153.3706262-CDS-P-canaliculata_contig1016:7207..72511693494153.3706262-CDS-P-canaliculata_contig1016:7207..7251Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1016 7208..7251 +
1622815589.181912-CDS-P-canaliculata_contig1016:7878..79951622815589.181912-CDS-P-canaliculata_contig1016:7878..7995Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1016 7879..7995 +
1693494153.3791556-CDS-P-canaliculata_contig1016:7878..79951693494153.3791556-CDS-P-canaliculata_contig1016:7878..7995Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1016 7879..7995 +
1622815589.19254-CDS-P-canaliculata_contig1016:8751..88081622815589.19254-CDS-P-canaliculata_contig1016:8751..8808Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1016 8752..8808 +
1693494153.3925529-CDS-P-canaliculata_contig1016:8751..88081693494153.3925529-CDS-P-canaliculata_contig1016:8751..8808Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1016 8752..8808 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig1016.248.1

>prot_P-canaliculata_contig1016.248.1 ID=prot_P-canaliculata_contig1016.248.1|Name=mRNA_P-canaliculata_contig1016.248.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=296bp
MAFCLQCVPNAEVGVIERLGKFQDLAQPGLNCVFWPIDVIVARISTRVQQ
LDVRMETKTRDNVFVTAVVSVQYQPIKEKVYDAYYRLTDPQAQIRSYVYD
VVRSTLPKLDLDQAFDSKEDIAIAVKNQLEQVMAEYGYQILQALVTDMDP
DRRVKEAMNEINASKRLREAATNKAEADKIMQVKAAEAEAESKYLSGVGV
SRQRKAIVDGLRDSVVTFSEKISGTSPKDVMDLLLLTQYFDMLRDVGQSS
RSSTVFLPHAPQSVEALQSAMRNGFMQGNAGQAGIAGASQQQIMR*
back to top

mRNA from alignment at P-canaliculata_contig1016:1234..9035+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig1016.248.1 ID=mRNA_P-canaliculata_contig1016.248.1|Name=mRNA_P-canaliculata_contig1016.248.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=7802bp|location=Sequence derived from alignment at P-canaliculata_contig1016:1234..9035+ (Pelvetia canaliculata dioecious)
CAGGACCATGGCTTTCTGCCTCCAGTGTGTACCCAACGCCGAGGTCGGCG
TCATCGAGAGGCTTGGAAAGTTTCAAGATCTCGCCCAACCGGGTTTGAAC
TGTGTCTTCTGGCCGATCGACGTTGTGAGTTCCCTCTCTCTTGTCTTAAG
CTTTCATAACTGTGTCGGGGGCGGTTTTCGTTTTGATTCCAAGTACACAT
TGAGATAACAGGTGATTACCGAGTGACGTGAGCTCAGCTGTGTGTGTATT
TGTACCCATATTATGTGCGAGAGAGATACAGGGAATGAGGGGAGGGGGGC
GTAGCTGCGGACCGAGCAACGCGGCAAGCGTGTCATACGAGAGTCGTGTA
CATGAGTGGTACTTCTTTAGGTGAAGAGGTGGCCTGGGCCAGAGGGGCGC
AGCGATACTCTGGTACGGAAGATCATGGCGTGTTTCGTATATAATATACC
ACTCAGCGGCCCTTATTCTTGATTGCGTCTGGACGTGTCACGGCAACGAT
TGCACTATCCCACGTGGCCGAGACGAAGTGTGCATTTCCTCATCTGCTAC
ATATGCGTGCTCGACTGTCACATCTTTACATTTATTAGCTTTTTTGCCTC
CTCTGCTTCCCCCCATACATGTATCATATCTCGACGCTATATCTTGATAA
CCGATCGATATTCCATTCCCTCAGATCGTCGCCAGAATCTCGACACGTGT
TCAGCAGCTCGACGTACGCATGGAGACCAAGGTCAGCCCCTCTAGCGAGA
GAGGCCCAAGTCTTCTAACGTTGTGAAGATGTTCTAATTCAAACAAAGGC
TTCGTAGTGAATAGAAACACTACAAAAAATCCAAGCCTTCTAACACTGGG
AAGATATTCGAATTCACACAAGTGCTTCGTAGTGAATAGAAACACTCCAA
AAAATCCGCCTCAATTCGAGCTTGTGGATAGAAATATTTATACAATCGAT
CGGGGATGGTGCTTTTTTATTTCCTTGGAAACTCAGAGAAGAGCTCGAGT
CATTTAAAATGCTCATACATTGGTGTTGTTTTTTCCATCAGTCATTAGAG
ATCATTTATATCTGGGAAGATTACGTACACATGAATATATATGTAGGATA
TATATAGATTATACGTCAAGAATATGTTTTCAAAATAACACAGAAAGACC
AAGACAGTTACTAAATTGCGCGAGTTTCTGTTTCCCCTTACACACCTGGA
TATGAATGTACCGAAAAAGCACATCGAGACACGACAATCTTTGTCGTTCG
ATCGAATTGTACGTGGCGAGGAAAGAGGTTGTTCTATTTCGAGATGCAGG
CAATAATTATACTTCCATCATTGTGGGCATGAATCCCCCCCCGAAATATT
AATGCCTTATCTAGGGTACGGTATACTCGTATGTAGTGCTGAGTCCTAGC
CTCCTTCACGGCGTGATATCATGGTGTTCGCTCTCTCTTCATTTGTCGCA
CTTTGCTTTGACTACGGTTCCGTTTTTTTCTCTTCCGGCTCTGGCCCTTT
TCTATGCTGCTACACTTTTAAACAGACGAGGGATAACGTGTTCGTGACCG
CCGTCGTCTCGGTGCAGTACCAGCCCATCAAGGAGAAAGTACGAAACTCT
CCCTGTTTCTGAGACGATATCCTACTACAATATTTCGAATTCCAACCGGC
TGCTACTGCTGCTGCTGCTGCTACTACTGCTGGGGGAACCCCTCTACCCC
CCCTCTCTCCTTCTCCCTCCTCCTCGACCAGTGTCTTGCTTCATTGTGTC
GTCCCATGTGGTAGTATCCAGTACTGTGCCATTTTATGTCGCGTCGCACC
TCATCACAACACTTCTACACTTCTTGTGCCATTATCTCCCGTCCCGGGCC
GTGCGGTACTGTGCAATACGGTTCAGCATATCACTGCACCGTACCGTATC
TTTCACCTATCACGTGCGGCGATGCGTACTATTAATATTACAGTACATTC
TGCAACGCCGATTACCTTGAGTATGGGTCCCCCTCTTTTAAAAACAGACC
GCCGGCATGGTCTATGTGCTGTCTGGAGGCCGCAATCGCCATCTCTCCCC
CCCCCCCCCTTCCCCCCTTCCCAACAAAACGTCCGTAATATTTCTCGACG
AAACCCTTCGTAACAACAACGCCGACGGTGGCGGTGGAGACAGGTCTACG
ACGCCTACTACAGGCTCACTGATCCCCAGGCGCAGATTCGATCCTACGTG
TACGACGTTGTCCGAAGTGAGTATCATCGCGAACGCCTGCACGGAGGAAG
GACAATGAGTGTTGTAGAGCTGCGGTTGGTGGCGTGTTTGCGGTTTTAGG
CGGGATAAACTCTAGCTCTAGAAAATGAGAAGTACTCTTGACTAGACTGG
CGGATTTTTTTCTTCTGCGCTTGCGAGGTAGTATGGATAGTACCTAGTAA
TTCGTAGCTAATTGGTGCTTTTCTCCCTCACCGACTTTTCTTTCTATTTT
TATTGATATTAATTTGTGTTAAAATTGGCTACGCCAAAACCAGGGGACGC
ACCTATGGATCGTGTTCACCGTGAGCAACGCTAAGTCCAACCAACCCCTG
TCAATCGTTACCTCACAGCAACACCATATCCTGACACGCCCTCCCCCCTT
TCGACGCTTAATAACACCATGTGTTGACATGTCTTCAAAACGTTATGTGC
GTATTTGAGTTATTTCGTCATTTTATTTGGCGGCGAATCTCTTGCGGCGG
CGGATGTCATCTTTCTTTTTCTCGTTCTTTTTTTTCCTTGTTTTTGTCCG
TTAGTTCTTTTTTACCGTTGACACTTTGTCGATAGGGTCATTCAACGTGT
GAAGTTGCAACCTTCACCGCAATCATTTTTTTGCTGGAACATATTTTTGC
CTATCCCAAATGTTTGCAATCTCCTTTTGTTTCCTTTAATTTCCCTTCTT
TTATTCTGCAAGGTACTCTGCCCAAGCTCGACCTTGACCAAGCTTTCGAT
TCCAAGGAGGTTAGAGGGAAGAAAACGTGATTTCGTTTCTTAACGTGGCG
TAGTCGCTCTCTCTTTGCATTGCCTTCCGCTCTCAGCTTCCGTTGATTAG
GAATCTTACTTGTTCAAGAATTTGCAAAAAAACATTCGGGAGATAATTAT
ATTCGAGAATCTCATTTAAAAAAACGTTGATTATTTTTGTTGTTGTTCAA
GAATCTCGTAAAAAAAACTGAAGAATGTTTTTTATTCAATAATTTTGTAA
AAAGACGGTTGGGAGTTTTTTTTTTGTTACAGAATCTCGTAAAAAACGGT
GTCAAAGTGCCTTTCGATAGATAGTACTATAAAAGGTGCATCTGTAGAGA
GAGTCATGGTATTTTATCACGCGGTTTCACTGCGTATTCTTCGGTGGAAA
TGCTATAGCCTGGATCGGAGAGGAAAAGGGTGGCCATTTCGTTTGACTGA
TCGTTGACTGGATTCGGGTGGAACGTTGAGTCAGAACCATATTATTGCTG
TGATACAAACAACAGCGTATTCATTGACGGCTGTGGAGTGTCTAAATTGA
GCAATTTCTGTACATGCTATTATCAGGATGTTTTTACTGAAAAATCGTCA
CCCGAAGAAAGCCGATCTAAGATTCCCACTTGATCTGCGGCTGATGGGCC
TTACGGTATTTCCAGACGTCTCGCGGTCAACCCCTTTCCCCCCGCCCGCC
CCCGCTCAAAACTCCCAACTACACGCTATCGATAAAAAGGGTTTTCTCAT
GTTCCTAGTATGAAATATATTACTATCAATAAGTGTACCATGGGTGAAGT
AGACCCAACTCAGCCCGACCTTTATTTTTTGCCCAAAAATCTCGGGAGAC
ATCTATACGAGTAGAAGCAATCAACCGTCCTTATCTACCAAAAAAGTGAA
GTTTGGAGCTTTTTAAAAAATCTATATTTACCCCCTCCAAAAAAAACATT
TGCCGTGCCGTTCAACACCGATCGGTCTCGGCAGGACATTGCCATCGCCG
TGAAGAACCAGCTCGAGCAGGTTATGGCGGAGTACGGTTACCAGATCCTC
CAGGCCCTCGTGACCGACATGGATCCCGACCGCCGCGTGAAAGAGGCCAT
GAACGAGATCAACGCCTCTAAGCGTCTTCGAGAGGCCGCCACTAACAAGG
CCGAGGCAGACAAGATCATGCAGGCGAGCACCGAGTGTTGCTCACGGCTA
CTATGGCCGCAGGCGGCAGTACTCTGGCGAATGCATTTGTGATCTGAGTT
CGTGACTTCGAAATGTATTTTGTGGATATTTGCGAGTGCCGACTTTTTTT
ACGGTCATTATCCCGACAGACGCACCGCCCTTGCAATAACTCACGTGCAC
ATACACACTTCTACATTCTATTATATACTTGGTACAAAACATATAGCTAC
AAGACCGCGTAATGTTCGCGGAGGAAAATCGCAACCTCAACTTATTAGGA
ACAATCGTGGGATTTCGCCATAAGAAATTATTAAGAATTTCGGCCGGAAA
ACCGGCCTGGTTCGGACGAAGAAGAAGGGGGATATTACTCGCGCCAACTG
GGCTGATATAAATCGTACGTCATATATTTTACTGTTACATTAGGAGTCGA
TGTTGGGATTTTCACTGTACAATAAATCATAGGACAGACAACGGTAGATC
AGTATAAAACAGAGGTGGCGGTGAAGACTCCTGAAAGGGCAGCGATACAG
CACCTGGCCCGGCCATCTTCTTCTCGACAGCTGCAGCTACTCTCGATTAC
AAGTCTACTGTTATTCGAGGACGCGAGCAAGGAGGACTCGGGTGACGCTG
CGAGGCAAAACCGGGAAGGTTTTGACCGAGGCGCTATAGCGGGGTGTTGT
CATGCCCCGACCAGGCTACAAATATAAAACGACTGTACTCTATTACGACC
CTGTACTGTATGCTTGCTATCAACGCACTCAAGGATTGGGGCCCTCGGGA
AAAGCGAAGGAGTTCAGGCAGCGAGTAAGCGCCTCAAACGAATTCATCTG
CGGGGGGGGGGCGCTCATCACATCTTTCATACGAAGTAGCCAGCGTAGGT
AATCAGGGCGGCCTGGATCTAACGGCAGGGCATCCGGGTTTTGTCCCCGC
CTGGTGGAGCTTACATAGCATGCTGCTTCTGCAGCAGACGTTGGCTTGAC
GTACGTCAGGAACACAAAATGAGGCGCTGGGCTTGGGAAGGGAATGGTAC
CAGGCATGCTGGAGTTGTTGCTAAGATCTTCCATGATGATTGTTGGTTCC
TCGGTAAGTAATGCGCCCATAGACTCTACAGGGTGCAACATTGAAGTGGT
GTTGATTCTGGACGAAATCGAAAAAAAAATGTGCTGACATGCCAAAAAAG
CGGATAATATTTTTTTCGCCGGCATTTTTTTTCTTCATTTTTGCTTCCCA
TCGTGTCTTACTTAAAAACTTGTCATTTGGAACCGTGTCTTACTTCAAAA
CTTCAACTTGTTCGAATAACTGTGAATTTACAGGTGAAAGCTGCCGAAGC
CGAGGCGGAGTCGAAGTACCTCTCCGGCGTGGGTGTCTCCAGGCAGCGTA
AAGCAATCGTCGATGGCCTCCGCGATTCCGTGGTAACGTTCTCGGAGAAA
ATCAGTGGTGAGTGGCCCGCATCGTGCGGCGAAGGTGACTTTTATTCTCT
TTTTATTTTTCATTTTTTCCTGAGAGTGCTTTTACTTTCTACCGTTCTTA
CTATATTTTACTTTACTTGTTAGTCGATTTGCCGTGGTGTAAGTTTTCTG
AGGCTTTAAAACAAAACAAAACGATGAGGCACTTGGAAGACTCTTGGTTA
AACATTTTCATGATGAGCACACAACGCTTCTCGGAATTAATACCCCGTTT
TCCATCGAGGAAGGACACGTTTGGAGAGACTACGACGGAGTTTCTGGAAA
GTTCCGGGAGGAATAAATGAAACGAAGCTGGCCGATAAGCGCATTTCTCT
CTTTCGTTGTTGATTTTTCTCCTTTGTTTTCTCATTCTCTTTCCATTTGT
GTCATACACCTCGTATCTAATCAGGCACTTCGCCGAAGGACGTGATGGAT
CTCCTTCTCCTCACGCAGGTGATAGTTTATAATTCAAGAACATAATATCA
GTTTTAGATCTGGAGGGCGTTTTTTTGTTGTTTTTTTGGGGGGGTAACAG
ATGTAATATGCCAACTGTGGTGAAAACTAAAACCTAAAAGTCTCGCGTCA
CCTAAACACGGTCATTTAGATTTGTCCCATTTGCATTTGACGGAAACAGC
CCTCTTTCGCTCAAGCTTGTCGTGCGGTACAGCGATACTTAGCATCGGGT
TAGAAAGTAAAATCATTGCTGCAACACAAACAGTAGGTTGTTTTATTACA
CATAGATAGATGGAGAGAGATGGAGAGATAGTGCTGACGTTTGTCGTACT
TGGTATTTTCCCAGCTGTGTCGATTTCCCATCATCTGGAAGACCCCCGCT
ACGTGTACGATATCTTACTGCCGACTACCCTGTCAATAGAAGCTACGACG
TGCAACTTGTCACCTCTTTCCATCCCCCTCTATATACACCTTCCCTCGTG
TCTGTAACCCCGCGTCCCGCACGCCTCCATCGTGGAAAACCCCACGCACG
TGCTGTACGGAACCCTTCTAATCGAGCCCTCTATCATAGTGCTCCTTTGA
AGCCGTACTTCGCTGTTTTCGACCGTTCAAACATGCTCTCAACAGTACTT
CGACATGCTCCGCGACGTGGGCCAGTCTTCGAGATCCTCGACGGTGTTCC
TGCCCCACGCACCCCAGTCGGTGGAGGCCTTGCAGTCCGCCATGCGCAAC
GGTTTCATGCAGGTAAAAGCGAAAGTAAAAGCCCACGTCGTCCGAGAACA
CTAGGGGGCGATTTCATTCGGTTTCCTTTTGTCACCGATCGAGTGGATTC
CTGGCAAACCTTACTCTACGTATCATCGTCTCGTTACACCTTTTTTTGTC
CCAATGGTATGCTGGTGGATAGGGACCGATGCGGTCGGAGGTGGGCGGGT
TGATGTTTCATATTTGTATAGCATGTTTCAGTTTTTGTTTTTGTTTTCCG
AAGGAAGGACGTCCTAAGGAATGCAGCGAATTGATGTGTCCAAGTACTAC
ATGGGTACTTTACAAAGCAGATACCCGCGTTTAGCTACGGAGTCGAGTAT
GTCACATTGTCTTACAACAGCGACCACCGCGCTTTGCTGCTTTTTGTTGA
TTTGCTTTTGCAAACGTTTTAACGGTTACGTAGCTCGAGATTTTTTCCAA
GTATATAACAGTTACAGATCAAAGTACTAACAGTATCGGGGCACAGCATC
AAGCGAGTGCCTTTTGGGGACTTTTTTGCAAATCTCTAGTGGGCGGGCTC
TAATCAACGCTAATCGCCTGATGTCATCAAAGTGTCGAGAGACTCGACGG
GAGCGCAAACGCCGCCCTCGTAACCTCCCCCCCCTCCTCCCTCCCGGACT
TTTTATCTTTTTACCAGTATTTGCTTGCGCTCTGCTGAACAGAACGTCTC
AGCCGTTATTTTCCCCTGACTCTCGTTTCTTCCAAACGGACACCTGTTTT
TACGATTGATTTGAACAGGGAAATGCCGGGCAGGCAGGCATCGCCGGCGC
TTCGCAGCAGCAGATTATGCGTTAATCCCCGAGGTTTAGTCTCCTCGACA
TTACCAAGAACTCCTGGCGTACCACCACACACTTCCAAGTGCAGTGTACA
TGTTTTATTTTTGTTTTTGTTTTTTACCGCCAGCTGCGTTCTACGTACAA
GTGCGTGGTGAAGTGTCAGCATGGGCTTTAGCTACAACAGTTTGTTGTGT
CCAAACCAGCGCTACATACGAGCACGAGCTTATTCCGCTTTTTATGTCGA
GA
back to top

Coding sequence (CDS) from alignment at P-canaliculata_contig1016:1234..9035+

>mRNA_P-canaliculata_contig1016.248.1 ID=mRNA_P-canaliculata_contig1016.248.1|Name=mRNA_P-canaliculata_contig1016.248.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1776bp|location=Sequence derived from alignment at P-canaliculata_contig1016:1234..9035+ (Pelvetia canaliculata dioecious)
ATGGCTTTCTGCCTCCAGTGTGTACCCAACGCCGAGGTCGGCGTCATCGA
GAGGCTTGGAAAGTTTCAAGATCTCGCCCAACCGGGTTTGAACTGTGTCT
TCTGGCCGATCGACGTTATGGCTTTCTGCCTCCAGTGTGTACCCAACGCC
GAGGTCGGCGTCATCGAGAGGCTTGGAAAGTTTCAAGATCTCGCCCAACC
GGGTTTGAACTGTGTCTTCTGGCCGATCGACGTTATCGTCGCCAGAATCT
CGACACGTGTTCAGCAGCTCGACGTACGCATGGAGACCAAGATCGTCGCC
AGAATCTCGACACGTGTTCAGCAGCTCGACGTACGCATGGAGACCAAGAC
GAGGGATAACGTGTTCGTGACCGCCGTCGTCTCGGTGCAGTACCAGCCCA
TCAAGGAGAAAACGAGGGATAACGTGTTCGTGACCGCCGTCGTCTCGGTG
CAGTACCAGCCCATCAAGGAGAAAGTCTACGACGCCTACTACAGGCTCAC
TGATCCCCAGGCGCAGATTCGATCCTACGTGTACGACGTTGTCCGAAGTC
TACGACGCCTACTACAGGCTCACTGATCCCCAGGCGCAGATTCGATCCTA
CGTGTACGACGTTGTCCGAAGTACTCTGCCCAAGCTCGACCTTGACCAAG
CTTTCGATTCCAAGGAGGTACTCTGCCCAAGCTCGACCTTGACCAAGCTT
TCGATTCCAAGGAGGACATTGCCATCGCCGTGAAGAACCAGCTCGAGCAG
GTTATGGCGGAGTACGGTTACCAGATCCTCCAGGCCCTCGTGACCGACAT
GGATCCCGACCGCCGCGTGAAAGAGGCCATGAACGAGATCAACGCCTCTA
AGCGTCTTCGAGAGGCCGCCACTAACAAGGCCGAGGCAGACAAGATCATG
CAGGACATTGCCATCGCCGTGAAGAACCAGCTCGAGCAGGTTATGGCGGA
GTACGGTTACCAGATCCTCCAGGCCCTCGTGACCGACATGGATCCCGACC
GCCGCGTGAAAGAGGCCATGAACGAGATCAACGCCTCTAAGCGTCTTCGA
GAGGCCGCCACTAACAAGGCCGAGGCAGACAAGATCATGCAGGTGAAAGC
TGCCGAAGCCGAGGCGGAGTCGAAGTACCTCTCCGGCGTGGGTGTCTCCA
GGCAGCGTAAAGCAATCGTCGATGGCCTCCGCGATTCCGTGGTAACGTTC
TCGGAGAAAATCAGTGGTGAAAGCTGCCGAAGCCGAGGCGGAGTCGAAGT
ACCTCTCCGGCGTGGGTGTCTCCAGGCAGCGTAAAGCAATCGTCGATGGC
CTCCGCGATTCCGTGGTAACGTTCTCGGAGAAAATCAGTGGCACTTCGCC
GAAGGACGTGATGGATCTCCTTCTCCTCACGCAGGCACTTCGCCGAAGGA
CGTGATGGATCTCCTTCTCCTCACGCAGTACTTCGACATGCTCCGCGACG
TGGGCCAGTCTTCGAGATCCTCGACGGTGTTCCTGCCCCACGCACCCCAG
TCGGTGGAGGCCTTGCAGTCCGCCATGCGCAACGGTTTCATGCAGTACTT
CGACATGCTCCGCGACGTGGGCCAGTCTTCGAGATCCTCGACGGTGTTCC
TGCCCCACGCACCCCAGTCGGTGGAGGCCTTGCAGTCCGCCATGCGCAAC
GGTTTCATGCAGGGAAATGCCGGGCAGGCAGGCATCGCCGGCGCTTCGCA
GCAGCAGATTATGCGTTAAGGAAATGCCGGGCAGGCAGGCATCGCCGGCG
CTTCGCAGCAGCAGATTATGCGTTAA
back to top