mRNA_P-canaliculata_contig101582.247.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig101582.247.1
Unique NamemRNA_P-canaliculata_contig101582.247.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig101582.247.1 vs. uniprot
Match: A0A353ZWR9_ARTSP (Glycosyltransferase (Fragment) n=1 Tax=Arthrobacter sp. TaxID=1667 RepID=A0A353ZWR9_ARTSP)

HSP 1 Score: 55.1 bits (131), Expect = 3.690e-8
Identity = 28/47 (59.57%), Postives = 37/47 (78.72%), Query Frame = 1
Query:   16 SVGVIICAYTERRWDLLVRAIDSVLVGQGA-DDIVVVIDHNDDLLQR 153
            SV ++ICAYTERRWDLL+  I+SV     A ++I+VVIDHN+DL +R
Sbjct:    9 SVSIVICAYTERRWDLLLDVIESVRAQTVAPEEILVVIDHNEDLYER 55          
BLAST of mRNA_P-canaliculata_contig101582.247.1 vs. uniprot
Match: UPI001F4A67A0 (glycosyltransferase n=1 Tax=Rhodococcus sp. CH91 TaxID=2910256 RepID=UPI001F4A67A0)

HSP 1 Score: 56.6 bits (135), Expect = 5.230e-8
Identity = 31/52 (59.62%), Postives = 39/52 (75.00%), Query Frame = 1
Query:    1 QTVTQSVGVIICAYTERRWDLLVRAIDSVLVG-QGADDIVVVIDHNDDLLQR 153
            QT+T SV  +ICAYT+RRWD L RA+DSV    +  D+I+VVIDHN+ LL R
Sbjct:  854 QTITASV--VICAYTDRRWDSLSRAVDSVRAQIRSVDEIIVVIDHNEPLLTR 903          
BLAST of mRNA_P-canaliculata_contig101582.247.1 vs. uniprot
Match: A0A378TDY6_9MYCO (Glycosyl transferase family protein n=1 Tax=Mycolicibacterium tokaiense TaxID=39695 RepID=A0A378TDY6_9MYCO)

HSP 1 Score: 56.2 bits (134), Expect = 6.820e-8
Identity = 27/51 (52.94%), Postives = 37/51 (72.55%), Query Frame = 1
Query:    4 TVTQSVGVIICAYTERRWDLLVRAIDSVLVGQGA-DDIVVVIDHNDDLLQR 153
            T+ +S  V+IC YTE RWDLLVR++ SVLV   A + ++VV+DHN DL  +
Sbjct:    2 TINRSADVVICTYTEARWDLLVRSVSSVLVQSVAPEQVIVVVDHNSDLAAK 52          
BLAST of mRNA_P-canaliculata_contig101582.247.1 vs. uniprot
Match: K0UN44_MYCVA (Glycosyl transferase family protein (Fragment) n=3 Tax=Mycolicibacterium vaccae TaxID=1810 RepID=K0UN44_MYCVA)

HSP 1 Score: 53.9 bits (128), Expect = 1.770e-7
Identity = 27/48 (56.25%), Postives = 35/48 (72.92%), Query Frame = 1
Query:   13 QSVGVIICAYTERRWDLLVRAIDSVLVGQGAD-DIVVVIDHNDDLLQR 153
            +S+ V+ICAYT  RWD L R+++SVL  +G    +VVVIDHNDDL  R
Sbjct:   24 ESLSVVICAYTTERWDDLCRSVESVLADRGPQLQVVVVIDHNDDLYVR 71          
BLAST of mRNA_P-canaliculata_contig101582.247.1 vs. uniprot
Match: UPI001964A02A (Glycosyltransferase family 2 protein n=2 Tax=Nakamurella leprariae TaxID=2803911 RepID=UPI001964A02A)

HSP 1 Score: 54.3 bits (129), Expect = 3.370e-7
Identity = 28/47 (59.57%), Postives = 37/47 (78.72%), Query Frame = 1
Query:   16 SVGVIICAYTERRWDLLVRAIDSVLVG-QGADDIVVVIDHNDDLLQR 153
            +  V++CAYTERRWD L+ AIDSV+   +  D++VVVIDHND LL+R
Sbjct:   31 TAAVVVCAYTERRWDDLLDAIDSVVPQLRTGDELVVVIDHNDVLLER 77          
BLAST of mRNA_P-canaliculata_contig101582.247.1 vs. uniprot
Match: A0A5C7PW78_9BURK (Glycosyltransferase family 2 protein n=1 Tax=Burkholderiaceae bacterium TaxID=2030806 RepID=A0A5C7PW78_9BURK)

HSP 1 Score: 53.9 bits (128), Expect = 4.510e-7
Identity = 28/49 (57.14%), Postives = 37/49 (75.51%), Query Frame = 1
Query:   10 TQSVGVIICAYTERRWDLLVRAIDSVLVG-QGADDIVVVIDHNDDLLQR 153
            T ++ V++CAYTE RWD LV AI S+    + AD+IV+VIDH+DDLL R
Sbjct:    7 TATIAVVVCAYTEARWDELVEAISSLDTQMRPADEIVLVIDHHDDLLAR 55          
BLAST of mRNA_P-canaliculata_contig101582.247.1 vs. uniprot
Match: A0A0B4DTS0_PSEPS (Glycosyltransferase n=1 Tax=Pseudarthrobacter phenanthrenivorans TaxID=361575 RepID=A0A0B4DTS0_PSEPS)

HSP 1 Score: 52.8 bits (125), Expect = 1.160e-6
Identity = 27/47 (57.45%), Postives = 35/47 (74.47%), Query Frame = 1
Query:   16 SVGVIICAYTERRWDLLVRAIDSVLVGQGA-DDIVVVIDHNDDLLQR 153
            SV ++ICAYTERRWDLL+  I+SV     A  +I+VV+DHN+DL  R
Sbjct:    6 SVSIVICAYTERRWDLLLDVIESVRAQTLAPQEIIVVVDHNEDLYGR 52          
BLAST of mRNA_P-canaliculata_contig101582.247.1 vs. uniprot
Match: UPI001785A6D2 (glycosyltransferase n=1 Tax=Microbacterium sp. Sa4CUA7 TaxID=2762236 RepID=UPI001785A6D2)

HSP 1 Score: 52.4 bits (124), Expect = 1.560e-6
Identity = 27/46 (58.70%), Postives = 33/46 (71.74%), Query Frame = 1
Query:   16 SVGVIICAYTERRWDLLVRAIDSVLVGQGADDIVVVIDHNDDLLQR 153
            SV V+ICAYT  RWD LV A+ SV     AD+ ++VIDHND+LL R
Sbjct:    2 SVSVVICAYTLDRWDQLVLAMASVAAQGSADETLLVIDHNDELLAR 47          
BLAST of mRNA_P-canaliculata_contig101582.247.1 vs. uniprot
Match: A0A7G6WQG4_9MICC (Glycosyltransferase family 2 protein n=2 Tax=unclassified Pseudarthrobacter TaxID=2647000 RepID=A0A7G6WQG4_9MICC)

HSP 1 Score: 52.4 bits (124), Expect = 1.580e-6
Identity = 25/47 (53.19%), Postives = 36/47 (76.60%), Query Frame = 1
Query:   16 SVGVIICAYTERRWDLLVRAIDSVLVGQ-GADDIVVVIDHNDDLLQR 153
            +V ++ICAYT+RRWDLL+  I+SV      A +I+VVIDHN++L +R
Sbjct:    5 TVSIVICAYTQRRWDLLLDVIESVRAQSVAAQEILVVIDHNEELFER 51          
BLAST of mRNA_P-canaliculata_contig101582.247.1 vs. uniprot
Match: A0A166PR67_9ACTN (Putative glycosyltransferase n=1 Tax=Frankia sp. EI5c TaxID=683316 RepID=A0A166PR67_9ACTN)

HSP 1 Score: 52.4 bits (124), Expect = 1.630e-6
Identity = 27/47 (57.45%), Postives = 36/47 (76.60%), Query Frame = 1
Query:   16 SVGVIICAYTERRWDLLVRAIDSVL-VGQGADDIVVVIDHNDDLLQR 153
            SV V+ICAYTE RW+ L RA+DS+L   + AD+I+VV DHN+ L +R
Sbjct:   10 SVSVVICAYTEERWEDLRRAVDSILRQRRPADEIIVVTDHNEPLRER 56          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig101582.247.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A353ZWR9_ARTSP3.690e-859.57Glycosyltransferase (Fragment) n=1 Tax=Arthrobacte... [more]
UPI001F4A67A05.230e-859.62glycosyltransferase n=1 Tax=Rhodococcus sp. CH91 T... [more]
A0A378TDY6_9MYCO6.820e-852.94Glycosyl transferase family protein n=1 Tax=Mycoli... [more]
K0UN44_MYCVA1.770e-756.25Glycosyl transferase family protein (Fragment) n=3... [more]
UPI001964A02A3.370e-759.57Glycosyltransferase family 2 protein n=2 Tax=Nakam... [more]
A0A5C7PW78_9BURK4.510e-757.14Glycosyltransferase family 2 protein n=1 Tax=Burkh... [more]
A0A0B4DTS0_PSEPS1.160e-657.45Glycosyltransferase n=1 Tax=Pseudarthrobacter phen... [more]
UPI001785A6D21.560e-658.70glycosyltransferase n=1 Tax=Microbacterium sp. Sa4... [more]
A0A7G6WQG4_9MICC1.580e-653.19Glycosyltransferase family 2 protein n=2 Tax=uncla... [more]
A0A166PR67_9ACTN1.630e-657.45Putative glycosyltransferase n=1 Tax=Frankia sp. E... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig101582contigP-canaliculata_contig101582:7..159 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size153
Cds size153
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815589.017584-CDS-P-canaliculata_contig101582:6..1591622815589.017584-CDS-P-canaliculata_contig101582:6..159Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101582 7..159 -
1693494153.2786322-CDS-P-canaliculata_contig101582:6..1591693494153.2786322-CDS-P-canaliculata_contig101582:6..159Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101582 7..159 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig101582.247.1prot_P-canaliculata_contig101582.247.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig101582 7..159 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig101582.247.1

>prot_P-canaliculata_contig101582.247.1 ID=prot_P-canaliculata_contig101582.247.1|Name=mRNA_P-canaliculata_contig101582.247.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=51bp
QTVTQSVGVIICAYTERRWDLLVRAIDSVLVGQGADDIVVVIDHNDDLLQ
R
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mRNA from alignment at P-canaliculata_contig101582:7..159-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig101582.247.1 ID=mRNA_P-canaliculata_contig101582.247.1|Name=mRNA_P-canaliculata_contig101582.247.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=153bp|location=Sequence derived from alignment at P-canaliculata_contig101582:7..159- (Pelvetia canaliculata dioecious)
CAAACAGTGACGCAGTCGGTCGGCGTCATCATCTGTGCCTACACGGAGCG CCGCTGGGACCTGCTGGTCCGGGCGATCGACTCCGTGCTCGTGGGGCAGG GGGCCGACGACATCGTCGTCGTGATCGACCACAACGATGACCTGCTCCAA CGG
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Coding sequence (CDS) from alignment at P-canaliculata_contig101582:7..159-

>mRNA_P-canaliculata_contig101582.247.1 ID=mRNA_P-canaliculata_contig101582.247.1|Name=mRNA_P-canaliculata_contig101582.247.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=306bp|location=Sequence derived from alignment at P-canaliculata_contig101582:7..159- (Pelvetia canaliculata dioecious)
CAAACAGTGACGCAGTCGGTCGGCGTCATCATCTGTGCCTACACGGAGCG
CCGCTGGGACCTGCTGGTCCGGGCGATCGACTCCGTGCTCGTGGGGCAGG
GGGCCGACGACATCGTCGTCGTGATCGACCACAACGATGACCTGCTCCAA
CGGCAAACAGTGACGCAGTCGGTCGGCGTCATCATCTGTGCCTACACGGA
GCGCCGCTGGGACCTGCTGGTCCGGGCGATCGACTCCGTGCTCGTGGGGC
AGGGGGCCGACGACATCGTCGTCGTGATCGACCACAACGATGACCTGCTC
CAACGG
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