mRNA_P-canaliculata_contig101577.246.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig101577.246.1
Unique NamemRNA_P-canaliculata_contig101577.246.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig101577.246.1 vs. uniprot
Match: A0A5C6DFK5_9BACT (PEP-CTERM domain-containing protein n=1 Tax=Novipirellula aureliae TaxID=2527966 RepID=A0A5C6DFK5_9BACT)

HSP 1 Score: 62.8 bits (151), Expect = 2.480e-9
Identity = 50/122 (40.98%), Postives = 67/122 (54.92%), Query Frame = 1 
Query:   10 ESSNINFNEFLTFSFDTDVVFDEIDFFGISGTETVVG-TVDGSS--FDFTNNQDGGSDLVLDPFESLVIGAGTDVSFAFADGTGNANAFGINDFTVT--AVPEPSSLALLGFCGLAIAGRRR 360
            ES + N  E     FD +V+  E +F  I G +     TV+G+   F FT+   G  D   DP   LV+ AGTDV+FA A GT       I++ +VT  A+PEPSSLA+LG  G+ +  RRR
Sbjct:  120 ESGDFNPGEAWVIEFDKNVMITEFNFSSIDGVDEFFDVTVEGNPTVFSFTDGTSG--DDFADPLSGLVVAAGTDVTFA-ARGTIGGTNIRISEISVTVVAIPEPSSLAVLGLGGMMMFVRRR 238
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BLAST of mRNA_P-canaliculata_contig101577.246.1 vs. uniprot
Match: A0A1M6SA19_9BACT (PEP-CTERM protein-sorting domain-containing protein n=1 Tax=Rubritalea squalenifaciens DSM 18772 TaxID=1123071 RepID=A0A1M6SA19_9BACT)

HSP 1 Score: 51.6 bits (122), Expect = 3.280e-5
Identity = 28/63 (44.44%), Postives = 38/63 (60.32%), Query Frame = 1 
Query:  181 LDPFESLVIGAGTDVSFAF--ADGTGNANAFGINDFTVTAVPEPSSLALLGFCGLAIAGRRRR 363
            LD ++SL++ AG  ++ A   +DG      + + D  VTAVPEPSS AL+G  GL    RRRR
Sbjct:  196 LDGYDSLILNAGDTLTLATDTSDGLATQGGWALTDIEVTAVPEPSSTALIGLAGLGFILRRRR 258
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig101577.246.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A5C6DFK5_9BACT2.480e-940.98PEP-CTERM domain-containing protein n=1 Tax=Novipi... [more]
A0A1M6SA19_9BACT3.280e-544.44PEP-CTERM protein-sorting domain-containing protei... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig101577contigP-canaliculata_contig101577:210..578 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size369
Cds size369
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815588.9701922-CDS-P-canaliculata_contig101577:209..5781622815588.9701922-CDS-P-canaliculata_contig101577:209..578Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101577 210..578 -
1693494153.2685432-CDS-P-canaliculata_contig101577:209..5781693494153.2685432-CDS-P-canaliculata_contig101577:209..578Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101577 210..578 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig101577.246.1prot_P-canaliculata_contig101577.246.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig101577 210..578 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig101577.246.1

>prot_P-canaliculata_contig101577.246.1 ID=prot_P-canaliculata_contig101577.246.1|Name=mRNA_P-canaliculata_contig101577.246.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=123bp
VDFESSNINFNEFLTFSFDTDVVFDEIDFFGISGTETVVGTVDGSSFDFT
NNQDGGSDLVLDPFESLVIGAGTDVSFAFADGTGNANAFGINDFTVTAVP
EPSSLALLGFCGLAIAGRRRRV*
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mRNA from alignment at P-canaliculata_contig101577:210..578-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig101577.246.1 ID=mRNA_P-canaliculata_contig101577.246.1|Name=mRNA_P-canaliculata_contig101577.246.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=369bp|location=Sequence derived from alignment at P-canaliculata_contig101577:210..578- (Pelvetia canaliculata dioecious)
GTTGACTTTGAAAGCTCAAATATTAATTTTAATGAGTTTTTAACTTTCTC
GTTCGATACAGATGTTGTTTTCGACGAAATCGACTTTTTTGGCATCAGTG
GTACTGAAACTGTGGTGGGTACAGTTGACGGATCGAGCTTTGACTTCACA
AACAATCAAGATGGTGGCAGCGACCTAGTCTTGGATCCGTTCGAGTCCCT
AGTGATCGGTGCTGGAACCGACGTCAGCTTTGCCTTCGCAGATGGAACAG
GTAATGCTAACGCTTTCGGCATTAACGACTTTACCGTAACCGCTGTTCCT
GAGCCATCGTCGCTCGCTCTGTTAGGCTTCTGCGGTCTTGCAATCGCTGG
TCGCCGTCGCCGCGTTTAG
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Coding sequence (CDS) from alignment at P-canaliculata_contig101577:210..578-

>mRNA_P-canaliculata_contig101577.246.1 ID=mRNA_P-canaliculata_contig101577.246.1|Name=mRNA_P-canaliculata_contig101577.246.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=738bp|location=Sequence derived from alignment at P-canaliculata_contig101577:210..578- (Pelvetia canaliculata dioecious)
GTTGACTTTGAAAGCTCAAATATTAATTTTAATGAGTTTTTAACTTTCTC
GTTCGATACAGATGTTGTTTTCGACGAAATCGACTTTTTTGGCATCAGTG
GTACTGAAACTGTGGTGGGTACAGTTGACGGATCGAGCTTTGACTTCACA
AACAATCAAGATGGTGGCAGCGACCTAGTCTTGGATCCGTTCGAGTCCCT
AGTGATCGGTGCTGGAACCGACGTCAGCTTTGCCTTCGCAGATGGAACAG
GTAATGCTAACGCTTTCGGCATTAACGACTTTACCGTAACCGCTGTTCCT
GAGCCATCGTCGCTCGCTCTGTTAGGCTTCTGCGGTCTTGCAATCGCTGG
TCGCCGTCGCCGCGTTTAGGTTGACTTTGAAAGCTCAAATATTAATTTTA
ATGAGTTTTTAACTTTCTCGTTCGATACAGATGTTGTTTTCGACGAAATC
GACTTTTTTGGCATCAGTGGTACTGAAACTGTGGTGGGTACAGTTGACGG
ATCGAGCTTTGACTTCACAAACAATCAAGATGGTGGCAGCGACCTAGTCT
TGGATCCGTTCGAGTCCCTAGTGATCGGTGCTGGAACCGACGTCAGCTTT
GCCTTCGCAGATGGAACAGGTAATGCTAACGCTTTCGGCATTAACGACTT
TACCGTAACCGCTGTTCCTGAGCCATCGTCGCTCGCTCTGTTAGGCTTCT
GCGGTCTTGCAATCGCTGGTCGCCGTCGCCGCGTTTAG
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