mRNA_P-canaliculata_contig101557.244.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig101557.244.1
Unique NamemRNA_P-canaliculata_contig101557.244.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig101557.244.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig101557contigP-canaliculata_contig101557:507..790 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size275
Cds size174
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig101557.244.1prot_P-canaliculata_contig101557.244.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig101557 607..790 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815588.775991-UTR-P-canaliculata_contig101557:506..6061622815588.775991-UTR-P-canaliculata_contig101557:506..606Pelvetia canaliculata dioeciousUTRP-canaliculata_contig101557 507..606 -
1693494153.1780398-UTR-P-canaliculata_contig101557:506..6061693494153.1780398-UTR-P-canaliculata_contig101557:506..606Pelvetia canaliculata dioeciousUTRP-canaliculata_contig101557 507..606 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815588.7872694-CDS-P-canaliculata_contig101557:606..6691622815588.7872694-CDS-P-canaliculata_contig101557:606..669Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101557 607..669 -
1693494153.1858683-CDS-P-canaliculata_contig101557:606..6691693494153.1858683-CDS-P-canaliculata_contig101557:606..669Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101557 607..669 -
1622815588.8025224-CDS-P-canaliculata_contig101557:679..7901622815588.8025224-CDS-P-canaliculata_contig101557:679..790Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101557 680..790 -
1693494153.193938-CDS-P-canaliculata_contig101557:679..7901693494153.193938-CDS-P-canaliculata_contig101557:679..790Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101557 680..790 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig101557.244.1

>prot_P-canaliculata_contig101557.244.1 ID=prot_P-canaliculata_contig101557.244.1|Name=mRNA_P-canaliculata_contig101557.244.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=58bp
SFSEQATLAQFVPPGESKLPSESVVWDVTVPGSYLHSCSRAEMRMMFGLP
TAARRAT*
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mRNA from alignment at P-canaliculata_contig101557:507..790-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig101557.244.1 ID=mRNA_P-canaliculata_contig101557.244.1|Name=mRNA_P-canaliculata_contig101557.244.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=284bp|location=Sequence derived from alignment at P-canaliculata_contig101557:507..790- (Pelvetia canaliculata dioecious)
TCCTTCAGCGAACAGGCCACCCTGGCGCAGTTCGTGCCACCAGGCGAGTC
GAAATTGCCGAGTGAAAGCGTGGTGTGGGATGTTACTGTACCCGGTAGCT
ACCTACACAGTGCATTCGTAGTGCAGTCGGGCAGAAATGAGGATGATGTT
TGGATTGCCGACAGCGGCGCGTCGTGCCACATGACGCACAATAGCTCGAG
AATGTATAACATGAGGCCCCCTCCGCCCGGTCGCGAAACCATCACGATCG
GGGACCGTCGAAAAATTAACGTAGAGTGTATCGG
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Coding sequence (CDS) from alignment at P-canaliculata_contig101557:507..790-

>mRNA_P-canaliculata_contig101557.244.1 ID=mRNA_P-canaliculata_contig101557.244.1|Name=mRNA_P-canaliculata_contig101557.244.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=348bp|location=Sequence derived from alignment at P-canaliculata_contig101557:507..790- (Pelvetia canaliculata dioecious)
TCCTTCAGCGAACAGGCCACCCTGGCGCAGTTCGTGCCACCAGGCGAGTC
GAAATTGCCGAGTGAAAGCGTGGTGTGGGATGTTACTGTACCCGGTAGCT
ACCTACACAGTTCCTTCAGCGAACAGGCCACCCTGGCGCAGTTCGTGCCA
CCAGGCGAGTCGAAATTGCCGAGTGAAAGCGTGGTGTGGGATGTTACTGT
ACCCGGTAGCTACCTACACAGTTGCAGTCGGGCAGAAATGAGGATGATGT
TTGGATTGCCGACAGCGGCGCGTCGTGCCACATGATGCAGTCGGGCAGAA
ATGAGGATGATGTTTGGATTGCCGACAGCGGCGCGTCGTGCCACATGA
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