mRNA_P-canaliculata_contig9999.24108.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig9999.24108.1
Unique NamemRNA_P-canaliculata_contig9999.24108.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig9999.24108.1 vs. uniprot
Match: D7G5D6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5D6_ECTSI)

HSP 1 Score: 163 bits (413), Expect = 1.190e-39
Identity = 114/317 (35.96%), Postives = 163/317 (51.42%), Query Frame = 3 
Query:  909 KSETYGECQPDTISFDGTPPCTDCPFGDVTISAGQTECVLGALVYLNLPQSVADAIVEDAVGGFAGPGWAVFDDRAWLRVLLAEDANVLSLAGTFHRWEDVDPTIPASAVIFAYIYTDDDPDNFLSSQGTLDTSTGAFTVVVEDVPTGESSLVLSFAILDSADAPPDMGTNTVYDYNVANVGCGNALTLTLEWDPRTILSEYSSSYYVATYMELLVTEPTGAELPIDE--STIGLHSSGDSY---PIVYTVYGD-NPDA---LGTYKIEVYERGVPLGTE-WTLTAKIRDEEVWVESGVHDSSPSNDITELEIVLDD 1829
            + E  G C  ++ S  G PPCT CP G+V+   G T C+   LV L+LP+++A A+  DA+GGFAGPG         ++ L  ED   +SL+GTF R  D    +P+S  +F Y      PD+F+  Q  LD STGAF+ VV D+P G S L+LSF ++D A+A    G +T +  +V+N  C  +LT+TLEW       E S        ++L V EP G  +        +G   + D+Y   P  Y +    +P A   LG Y+  V        TE W LTA++  E VW+E G   SS  +D   + + + D
Sbjct:  133 QEEVAGLCASNSFSSTGAPPCTTCPDGEVS-GTGATACIRQELVGLSLPENIAAAMAADAMGGFAGPGSLTTTPAGTIQ-LTEEDGGSVSLSGTFVR--DDGAALPSSTSVFIYTENTAQPDDFVRGQEALDPSTGAFSTVVTDIPAGSSRLLLSFVVVDPAEALDTAGADTAFALDVSNSACVPSLTITLEWT-----GEISD-------VDLYVVEPGGEVVYFSNRGGDVGFLDNDDTYGFGPENYIIDSALDPAASQVLGEYETYVKLYSGDAATETWRLTARVSGEVVWIEEGDFISSTQSDTFAVSLSVYD 433
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BLAST of mRNA_P-canaliculata_contig9999.24108.1 vs. uniprot
Match: D7G3X5_ECTSI (VWFD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3X5_ECTSI)

HSP 1 Score: 160 bits (405), Expect = 1.110e-37
Identity = 110/305 (36.07%), Postives = 157/305 (51.48%), Query Frame = 3 
Query:  945 ISFDGTPPCTDCPFGDVTISAGQTECVLGALVYLNLPQSVADAIVEDAVGGFAGPGWAVFDDRAWLRVLLAEDANVLSLAGTFHRWEDVDPTIPASAVIFAYIYTDDDPDNFLSSQGTLDTSTGAFTVVVEDVPTGESSLVLSFAILDSADAPPDMGTNTVYDYNVANVGCGNALTLTLEWDPRTILSEYSSSYYVATYMELLVTEPTGAELPIDE--STIGLHSSGDSY---PIVYTVYGD-NPDA---LGTYKIEVYERGVPLGTE-WTLTAKIRDEEVWVESGVHDSSPSNDITELEIVLDD 1829
             S  G PPCT CP G+V+   G T C+   LV L+LP+++A A+  DA+GGFAGPG         ++ L  ED   +SL+GTF R  D    +P+S  +F Y      PD+F+  Q  LD STGAF+ VV D+P G S L+LSF ++D A+A    G +T +  +V+N  C  +LT+TLEW   T            + ++L V EP G  +        +G   + D+Y   P  Y +    +P A   LG Y+  V        TE W LTA++  E VW+E G   SS  +D   + + + D
Sbjct:  271 FSSTGAPPCTTCPDGEVS-GTGATACIRQELVGLSLPENIAAAMAADAMGGFAGPGSLTTTPAGTIQ-LTEEDGGSVSLSGTFVR--DDGAALPSSTSVFIYTENTAQPDDFVRGQEALDPSTGAFSTVVTDIPAGSSRLLLSFVVVDPAEALDTAGADTAFALDVSNSACVPSLTITLEWTGET------------SDVDLYVVEPGGEVVYFSNRGGDVGFLDNDDTYGFGPENYIIDSALDPAASQVLGEYETYVKLYSGDAATETWRLTARVSGEVVWIEEGDFISSTQSDTFAVSLSVYD 559
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BLAST of mRNA_P-canaliculata_contig9999.24108.1 vs. uniprot
Match: A0A6H5JLL4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLL4_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 9.030e-22
Identity = 94/323 (29.10%), Postives = 150/323 (46.44%), Query Frame = 3 
Query:  924 GECQPDTISFDGTPPCTDCPFGDVTISAGQTECVLGALVYLNLP-QSVADAIVEDAVGGFAGPGWAV------------FDDRAWLRVLLAEDANVLSL--AGTFHRWEDVDPTIPASAVIFAYIYTDDDPDNFLSSQGTLDTSTGAFTVVVEDVPTGESSLVLSFAILDSADA----PPDMGTNTVYDYNVANVGCGNALTLTLEWDPRTILSEYSSSYYVATYMELLVTEPTGAELPIDESTIGLHSSGDSYPIVYTVYGDNPDALGTYKIEVYERGVPLGTE--WTLTAKIRDEEVWVESGVHDSSPSNDITELEIVLDD 1829
            G C  +T S  GTPPCTDCP G+V+   G   CV   +  + LP +++  A++ DA GGFAGPG  +             D + W  + L  DAN+ S+  +G F R +     +P S+ +F YI   D PD+       +  ++G F++VV DVP G S L LSF I D A+A       +   +++   ++N+ C  +LT+T EW      + Y  +    T +       +G      ++  G   +   Y +   +  D    LG YK   +   +P  T   W +TA++  E V++     +    +DI E  ++L D
Sbjct:  760 GLCTTNTFSSTGTPPCTDCPAGEVS-GRGAKVCVPQGVPAVALPSEAIVAAMLADATGGFAGPGSLIDGGVMGGFGVTEVDIQPWGEIELT-DANLGSVYVSGKFVRHDSA--PLPFSSAVFFYIENADQPDDIARGSSKIRGTSGDFSMVVMDVPPGNSRLFLSFVIKDPAEALNVAAEVVPATSIFSLQISNMACVPSLTITHEWIGGNF-APYEITEPDLTTIHSGHGNYSGGVGVFQDNWAGSSPAAKRYILYSGLDVDTSQVLGEYKGRKFLPILPSETPPTWRITARVSGEIVYMYK---EEQVQSDIVEFTVLLTD 1074
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BLAST of mRNA_P-canaliculata_contig9999.24108.1 vs. uniprot
Match: A0A6H5KFA6_9PHAE (F5/8 type C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KFA6_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 3.130e-15
Identity = 59/163 (36.20%), Postives = 88/163 (53.99%), Query Frame = 3 
Query:   12 TPVTDLTASANGYDG--RVDGWGCAPSGCLPSNAIDGSLEYPSRWSCVRYLIDGYDSSSDQSEMCELTLDLLEPTNIEEVRVALWKGHQRARSFNIVVDGVVMGVFTSSGTTESFETYELTATLASRVVLQAQHTADDNSWFSLLEIQLMTESEVVTSPPVQP 494
            T  T +T +A+ +D    VD  GC P+GC  +   DG +   SRW+C   L            +C ++ DL     ++EVRVAL+ G  R R+ N+ VDG ++  +TSSGTT  FE+  L  T AS  V++ Q   DD+ W S++E ++M   + V +PP  P
Sbjct:  368 TQDTTVTTTADLFDPDLAVDN-GCDPAGCTGALTRDGDMTDTSRWACAPSL----------GGVCFISYDLGREFGLDEVRVALYNGDIRVRTINVFVDGALVTTWTSSGTTNGFESIALPDT-ASGTVVELQGVLDDSEWLSIIETEIMVWPQNVVTPPPAP 518
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BLAST of mRNA_P-canaliculata_contig9999.24108.1 vs. uniprot
Match: A0A6H5KH45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH45_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 4.850e-15
Identity = 57/158 (36.08%), Postives = 85/158 (53.80%), Query Frame = 3 
Query:   27 LTASANGYDGR--VDGWGCAPSGCLPSNAIDGSLEYPSRWSCVRYLIDGYDSSSDQSEMCELTLDLLEPTNIEEVRVALWKGHQRARSFNIVVDGVVMGVFTSSGTTESFETYELTATLASRVVLQAQHTADDNSWFSLLEIQLMTESEVVTSPPVQP 494
            +TA A+ YD R  VDG GC PSGC+  N  DG L   SRWSC   L             C ++ DL    +++E+R+A++KG +R  S  + VD  ++  +TSSGTT+ FE  +L+ T     VL+     DD+ W S++E ++M   +  +  P  P
Sbjct:  178 VTAGASFYDPRLAVDG-GCDPSGCVVDNTRDGDLSTASRWSCAPTL----------GGECTISYDLGTAYDLDELRLAMFKGTERQVSMKVRVDDALVTTWTSSGTTDGFEAIDLSGTWGQ--VLEITGVLDDSEWLSIIEAEIMVLEDGASPMPTTP 322
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BLAST of mRNA_P-canaliculata_contig9999.24108.1 vs. uniprot
Match: D7FZZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZZ4_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 2.490e-14
Identity = 55/163 (33.74%), Postives = 87/163 (53.37%), Query Frame = 3 
Query:   12 TPVTDLTASANGYDGR--VDGWGCAPSGCLPSNAIDGSLEYPSRWSCVRYLIDGYDSSSDQSEMCELTLDLLEPTNIEEVRVALWKGHQRARSFNIVVDGVVMGVFTSSGTTESFETYELTATLASRVVLQAQHTADDNSWFSLLEIQLMTESEVVTSPPVQP 494
            T  T +T +A+ +D    +D  GC P+GC  +   DG     SRWSC   L         +  +C ++ DL     ++E+RVAL+ G  R R+ ++ VDGV++  +TSSGTT+ FE+      + S  V+  Q   DD+ W S++E ++M   + V +PP  P
Sbjct:  246 TQDTTVTTTADLFDPALAIDN-GCDPAGCTAALTRDGDTGDASRWSCATNL-------GGEGAVCSISYDLGREFGLDELRVALYNGDIRVRTIDVSVDGVLVATWTSSGTTDGFESIAFPDGV-SGTVINLQGVLDDSEWLSIIETEIMVWPQNVVTPPPTP 399
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BLAST of mRNA_P-canaliculata_contig9999.24108.1 vs. uniprot
Match: D7FTH1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTH1_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 3.190e-13
Identity = 53/145 (36.55%), Postives = 80/145 (55.17%), Query Frame = 3 
Query:   27 LTASANGYDGR--VDGWGCAPSGCLPSNAIDGSLEYPSRWSCVRYLIDGYDSSSDQSEMCELTLDLLEPTNIEEVRVALWKGHQRARSFNIVVDGVVMGVFTSSGTTESFETYELTATLASRVVLQAQHTADDNSWFSLLEIQLM 455
            +T  A+ YD    VDG GC PSGC+  N  DG L   SRWSC   L             C ++ DL    +++EVR+A++KG +R  +  + VD  ++  +TSSGTT+ FE  +++ T  S  VL+     DD+ W S++E ++M
Sbjct:  365 VTVGASLYDPSLAVDG-GCDPSGCVADNTRDGDLSAASRWSCAPKL----------GGECSISYDLGTAYDLDEVRLAMFKGTERQVTMEVRVDDALVITWTSSGTTDGFEAIDMSGT--SGQVLEITGVLDDSEWLSIIEAEIM 496
[Close]
BLAST of mRNA_P-canaliculata_contig9999.24108.1 vs. uniprot
Match: D8LKE7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKE7_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 1.120e-10
Identity = 73/281 (25.98%), Postives = 120/281 (42.70%), Query Frame = 3 
Query: 1086 AVGGFAGPGWAV------------FDDRAWLRVLLAEDANVLSL--AGTFHRWEDVDPTIPASAVIFAYIYTDDDPDNFLSSQGTLDTSTGAFTVVVEDVPTGESSLVLSFAILDSADA----PPDMGTNTVYDYNVANVGCGNALTLTLEW-------------DPRTILSEYSSSYYVATYMELLVTEPTGAELPIDESTIGLHSSGDSYPIVYTVYGDNPDALGTYKIEVYERGVPLGTE--WTLTAKIRDEEVWVESGVHDSSPSNDITELEIVLDD 1829
            A GGFAGPG  +             D + W  + L  DAN+ S+  +G F R +     +P S+ +F YI   D PD+F      +  ++G  +++V DVP G S L LSF I D A+A       +   +++  +++N+GC  +LT+T EW             D  TI S++               + +G      ++  G   +   Y +   +  D    LG YK  ++   V   T   W  TA++  E V++     +    +D  E  ++L D
Sbjct:   10 ATGGFAGPGSLIDGGVMGGFGVTEVDIQPWGEIELT-DANLGSVYVSGKFVRHDSA--ALPFSSAVFFYIENADQPDDFARGSFKIRGASGDLSMLVTDVPPGNSRLFLSFVIEDPAEALNVAAEVVPATSIFSLDISNMGCVPSLTITHEWIGGNFAPYEITEPDLNTINSDHG--------------DVSGGVGVFQDNWAGSSPAAKRYILYSGLDVDTSQVLGEYKGRMFLPFVTSETPPTWRSTARVSGEIVYMYK---EEQVQSDTVEFTVLLTD 270
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BLAST of mRNA_P-canaliculata_contig9999.24108.1 vs. uniprot
Match: UPI001061B8BB (polysaccharide lyase family 7 protein n=1 Tax=Paraglaciecola marina TaxID=2500157 RepID=UPI001061B8BB)

HSP 1 Score: 59.3 bits (142), Expect = 3.300e-5
Identity = 47/161 (29.19%), Postives = 78/161 (48.45%), Query Frame = 3 
Query:   24 DLTASANGYDGRVDGW---------GCAPSGCLPSNAIDGSLEYPSRWSCVRYLIDGYDSSSDQSEMCELTLDLLEPTNIEEVRVALWKGHQRARSFNIVVDGVVMGVFT------SSGTTESFETYELTATLASRVVLQAQHTADDNSWFSLLEIQLMTE 461
            + T+++ G D   DG          G + S   PSNAIDGS  + SRW           ++S  S    LTL+L E  N+++V ++  +G  R+ +F I       G +T      SSG +   E Y++T   A +V ++AQ  +  +SW ++ E+++  E
Sbjct:  149 ESTSTSPGSDTGTDGELTISTAFDDGTSHSNYPPSNAIDGSSAWASRW-----------AASLGSNATNLTLELEEVQNVKQVGISWGRGDSRSHTFEIYARPGTSGNWTKIADTVSSGNSTDIELYDVTDFDAQQVRVKAQSNSAGSSWMNITEVKIYGE 298
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9999.24108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7G5D6_ECTSI1.190e-3935.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G3X5_ECTSI1.110e-3736.07VWFD domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JLL4_9PHAE9.030e-2229.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFA6_9PHAE3.130e-1536.20F5/8 type C domain-containing protein n=2 Tax=Ecto... [more]
A0A6H5KH45_9PHAE4.850e-1536.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZZ4_ECTSI2.490e-1433.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FTH1_ECTSI3.190e-1336.55Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LKE7_ECTSI1.120e-1025.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI001061B8BB3.300e-529.19polysaccharide lyase family 7 protein n=1 Tax=Para... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig9999contigP-canaliculata_contig9999:1912..7384 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score164.1
Seed ortholog evalue1.9e-37
Seed eggNOG ortholog2880.D7G3X5
KEGG koko:K22017
EggNOG free text desc.Sushi, nidogen and EGF-like
EggNOG OGsKOG4291@1,KOG4291@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Exons8
Model size3073
Cds size1656
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig9999.24108.1prot_P-canaliculata_contig9999.24108.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig9999 3135..7190 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817358.9172168-UTR-P-canaliculata_contig9999:1911..31341622817358.9172168-UTR-P-canaliculata_contig9999:1911..3134Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9999 1912..3134 -
1693495245.9380264-UTR-P-canaliculata_contig9999:1911..31341693495245.9380264-UTR-P-canaliculata_contig9999:1911..3134Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9999 1912..3134 -
1622817359.033668-UTR-P-canaliculata_contig9999:7190..73841622817359.033668-UTR-P-canaliculata_contig9999:7190..7384Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9999 7191..7384 -
1693495246.0307503-UTR-P-canaliculata_contig9999:7190..73841693495246.0307503-UTR-P-canaliculata_contig9999:7190..7384Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9999 7191..7384 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817358.9324615-CDS-P-canaliculata_contig9999:3134..33891622817358.9324615-CDS-P-canaliculata_contig9999:3134..3389Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9999 3135..3389 -
1693495245.949652-CDS-P-canaliculata_contig9999:3134..33891693495245.949652-CDS-P-canaliculata_contig9999:3134..3389Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9999 3135..3389 -
1622817358.9451678-CDS-P-canaliculata_contig9999:3626..41361622817358.9451678-CDS-P-canaliculata_contig9999:3626..4136Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9999 3627..4136 -
1693495245.9590323-CDS-P-canaliculata_contig9999:3626..41361693495245.9590323-CDS-P-canaliculata_contig9999:3626..4136Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9999 3627..4136 -
1622817358.9576325-CDS-P-canaliculata_contig9999:4493..45461622817358.9576325-CDS-P-canaliculata_contig9999:4493..4546Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9999 4494..4546 -
1693495245.9690473-CDS-P-canaliculata_contig9999:4493..45461693495245.9690473-CDS-P-canaliculata_contig9999:4493..4546Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9999 4494..4546 -
1622817358.971367-CDS-P-canaliculata_contig9999:4974..50821622817358.971367-CDS-P-canaliculata_contig9999:4974..5082Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9999 4975..5082 -
1693495245.979727-CDS-P-canaliculata_contig9999:4974..50821693495245.979727-CDS-P-canaliculata_contig9999:4974..5082Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9999 4975..5082 -
1622817358.9840205-CDS-P-canaliculata_contig9999:5288..55831622817358.9840205-CDS-P-canaliculata_contig9999:5288..5583Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9999 5289..5583 -
1693495245.990219-CDS-P-canaliculata_contig9999:5288..55831693495245.990219-CDS-P-canaliculata_contig9999:5288..5583Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9999 5289..5583 -
1622817358.9974287-CDS-P-canaliculata_contig9999:5897..60221622817358.9974287-CDS-P-canaliculata_contig9999:5897..6022Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9999 5898..6022 -
1693495246.0000408-CDS-P-canaliculata_contig9999:5897..60221693495246.0000408-CDS-P-canaliculata_contig9999:5897..6022Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9999 5898..6022 -
1622817359.008418-CDS-P-canaliculata_contig9999:6361..64221622817359.008418-CDS-P-canaliculata_contig9999:6361..6422Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9999 6362..6422 -
1693495246.0103855-CDS-P-canaliculata_contig9999:6361..64221693495246.0103855-CDS-P-canaliculata_contig9999:6361..6422Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9999 6362..6422 -
1622817359.019455-CDS-P-canaliculata_contig9999:6941..71901622817359.019455-CDS-P-canaliculata_contig9999:6941..7190Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9999 6942..7190 -
1693495246.0210235-CDS-P-canaliculata_contig9999:6941..71901693495246.0210235-CDS-P-canaliculata_contig9999:6941..7190Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9999 6942..7190 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig9999.24108.1

>prot_P-canaliculata_contig9999.24108.1 ID=prot_P-canaliculata_contig9999.24108.1|Name=mRNA_P-canaliculata_contig9999.24108.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=552bp
MCELTLDLLEPTNIEEVRVALWKGHQRARSFNIVVDGVVMGVFTSSGTTE
SFETYELTATLASRVVLQAQHTADDNSWFSLLEIQLMTESEVVTSPPVQP
TDSGCSTGSIRSSLEVQLSYAGAGRYLDLNAEEPSGAVVDQYDKGDVGVL
TSVGFYDDPGMKYTTYTLMNGLDATEDPVLGDYTFWVKGGEEGEEYLLTA
RASGELMWAVEGMVGSDPWDDDQPTYTATITEYEESDCKSETYGECQPDT
ISFDGTPPCTDCPFGDVTISAGQTECVLGALVYLNLPQSVADAIVEDAVG
GFAGPGWAVFDDRAWLRVLLAEDANVLSLAGTFHRWEDVDPTIPASAVIF
AYIYTDDDPDNFLSSQGTLDTSTGAFTVVVEDVPTGESSLVLSFAILDSA
DAPPDMGTNTVYDYNVANVGCGNALTLTLEWDPRTILSEYSSSYYVATYM
ELLVTEPTGAELPIDESTIGLHSSGDSYPIVYTVYGDNPDALGTYKIEVY
ERGVPLGTEWTLTAKIRDEEVWVESGVHDSSPSNDITELEIVLDDISRYE
C*
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mRNA from alignment at P-canaliculata_contig9999:1912..7384-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig9999.24108.1 ID=mRNA_P-canaliculata_contig9999.24108.1|Name=mRNA_P-canaliculata_contig9999.24108.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=5473bp|location=Sequence derived from alignment at P-canaliculata_contig9999:1912..7384- (Pelvetia canaliculata dioecious)
CAGCTGCTCTAACTCCGGTGACCGACCTCACGGCGTCTGCCAACGGGTAC
GACGGAAGGGTGGATGGCTGGGGCTGCGCTCCAAGCGGCTGCCTCCCTTC
CAACGCCATCGATGGCTCCCTTGAGTATCCTTCGCGCTGGTCATGCGTTC
GCTATTTGATCGACGGGTACGACTCCTCAAGCGATCAAAGCGAAATGTGC
GAGCTTACGCTCGACCTCCTCGAACCGACCAATATCGAGGAGGTTAGGGT
TGCCTTATGGAAAGGACATCAGCGTGCCCGGAGCTTCAATATCGTGGTAG
ATGGGGTAGTGATGGGCGTGTTCACGTCAAGCGGGACGACGGAGAGCTTC
GAGACGTACGAGCTGACGGCAACGCTGGCATCCAGGGTCGTCCTCCAGGC
TCAACACACGGCCGATGACAACAGCTGGTTCAGCCTTCTTGAGGTAGGCC
CCAGTGGAAAGTGCGTGAGCTTTTCCTGGTGTTTGAAGTATACTTGCCTG
CACAAAGGGAATTGCGATAATGTCTGGCAGTAGTGCGGTTTTGGCTAAAA
TTGCAGAATCTAAAAACGAAGCTGCTGGCATATTATCGCCCACTTTTTCG
CCCTTCTTGTATTAAGGTGTCTTGTAAAAACATTATGAGCTCGTTCTTAG
TATGTATGTATGTATGTATGTCTAAGGCGAAATAAAATTTGTTTCACCAT
CTGATAAAACATTCGGGCGGCAAAGGTTATCAAGTCAGGATTGATTTTTT
CGCGCAACAACTTTACAAAGCCATCAAAGTTTACTATTTTTTTAGTTAAC
GCTGCCCGACTCAAACAAAGGGGGTTCTATCCTGTGGTTTTTTTTTGCTG
AACGAGAACCTACGTGAAATGTCACCCCGCCCCTATAAAAGGATACGTAG
TAGAATGATCTATGACTGACCTCGTCTTCTCCCCCGCTCAATGTTGTTTT
TTATTCCTCCAGATCCAGCTTATGACTGAGTCTGAGGTTGTCACCTCCCC
GCCTGTTCAGCCCACGGACTCAGGTATGAATAGGTCGACCGCTGCGTGGC
AGGTGTAATTCGTTGACAAGCCATACGAACGGGACGAATGTGGCGCAAAC
TTTAATATATTTATACACCATCTGATTTCTTAAAATAATGGACAGATTCA
GCGAGCCATGTGCTGCCCATCGTCATGCAATCATTTGAAATGAGGGTGTC
ACAGCTCGTCCAATCTCTCCTTTGGTTAGCCCTTTCAGGGGAAACTTGTG
CATAAGTATTGTTCAGGCTGCTGCAACACCTGCACATCGCACACCCCGAA
ACAGCATACCACATCATCGTTTAACGCCTTCCTCGTCCGGCCTACCTCGT
CGTCTTCACTAGGCTGCTCCACCGGGTCCATCCGGTCTTCGTTGGAGGTC
CAGCTGAGCTACGCTGGTGCGGGAAGGTACTTGGACCTCAACGCCGAAGA
ACCGTCTGGAGCGGTAGTGGATCAGTATGATAAGGGGGTGAGGCAAAATA
CATAAGTGCGCTGCGAACGTCGCAAGCCGCAGCTGAAAAATCAAGTTGCG
ACAAACCTGAAAAAGCGTTTGCATCGACTTCACTTGGGGCACCTGGTAAA
TTACCGGCGTACTGTAATAGTAATCTCACCCTGCTCAGTACACAAGAATT
GATTTTTCCGATCGAGAGGTAGAGTCAATGCATGTGGGGATGACCGAGAC
AGCGATGTTGCTCTCGTAACGATATGCGCTTCAATCCCGCGGTAATGCTT
ACAATCTTAGTCGCATCGACTACTACTTCCGATTGGAAATCATTTCGTCA
GGACGTCGGCGTACTCACCAGCGTCGGTTTCTACGATGATCCTGGAATGA
AGTATACAACGTATACCCTTATGAACGGCCTGGACGCTACTGAAGACCCT
GTACTTGGCGACTACACCTTTTGGGTCAAAGGAGGGGAAGAGGGCGAGGA
GTACCTGTTGACCGCTCGCGCTAGCGGCGAACTGATGTGGGCTGTCGAAG
GCATGGTCGGGTCCGACCCCTGGGACGACGACCAACCCACGTATACTGCA
ACGATCACGGAGTACGAGGAGAGCGATTGCAAGAGCGAAACTTATGGTTC
GTTTTCCCTTCCATATAACGCAGCAATCGACTCTTGTCCGTTATCCGTCT
TTGCAGCTCGCCTGATCACACCAAGAATAAAAAGGCCGAACACCCAAGCA
AATGAAAAGGAGAAGTCGCCAAATGAGTGCCCTTCGACAAAACGAACTCA
GCCCTTACGCGATAATGTTGCTTCAAATAATCTACGCCTCGCGTACCTGC
AGGCGAATGTCAGCCCGACACCATCAGCTTCGATGGCACGCCTCCTTGTA
CCGACTGCCCCTTCGGAGACGTGACGATATCAGCAGGACAGACAGAATGC
GTTCTTGGAGGTACGAGATGCGACACTGTCAGCCGCAGAGTTTTGCCTCG
TTCGGGCCGGTGTAGCCGTTGAAAAACAGGGCACCGCCTTTCTTTGTGCC
GTACGGTTTCTAAAGTAACGAATCCTAGAGTGTGGAAGTGAGACAGCGAT
TGGCTACCCAGGTGCACCGGCTTCGAGCCTTCAACCTCGTCGTGCATCAT
TTCACAATCTTCGCAGCTTCGAATTAGAGGAGGGAGGACATGTCTTGTTT
TAGTAGATAAATGTGTAGATGGCTGAAAGTTCTTGCATCTCGGTATATAT
TTATGACTGTGCCTTACTTAGTGCCCTTCAAAAATACGGTCTTCACTTCC
ATTCTGCACGAGACCTTGTGGGGAAGCAACCAAACCAACACCGTCTGATT
TTCCTGCTGTGATATGTGAACCTTTCACCTTGTTACAGCCTTGGTGTACC
TCAATTTGCCCCAGAGCGTGGCTGACGCTATCGTCGAAGATGTGAGTACG
AATCGCACCGAATTCTATCTGGTAGGGAGCAAATTCTTAGGCGACGCGAT
AGAGAGATCAGGCCTTGCGTCAGACTAGGATAGGGCTGAGACCGTTTTGC
TCGTACCTGAATATTTTGCTACCCTAAATCGTCCCGTTCAAGTGAGGGTG
AGCAATTGTTGACGAGCTGGATAGTACATGACCATGTGACGGGGTACCTG
TGTGTTACACTGGGTATTCCAAAACTTTAACCTAACATGTGTGACCGTCA
GTAAAAGTGTAGTCTCAGTCACGTCAAAGCTCTTTGCCAAAGCACAAAAC
TAACCTTGACATCCACACGGTGATATCTACTCCACGACTTTCGAATAGGC
CGTCGGTGGGTTTGCAGGACCAGGATGGGCCGTTTTCGATGACCGCGCCT
GGCTTCGTGTCCTCCTTGCGGAGGACGCCAACGTGCTTTCCCTGGCCGGA
ACATTCCATCGTTGGGAGGATGTCGACCCCACCATCCCCGCCTCTGCCGT
GATCTTTGCCTACATCTACACGGACGACGATCCGGACAATTTTCTCAGCT
CCCAGGGCACCCTCGATACTTCCACTGGCGCGTTCACCGTTGTCGTTGAG
GATGTACCCACTGGCGAGAGCAGTCTCGTTCTGAGCTTTGCCATTTTGGA
TTCCGCCGATGCCCCTCCTGATATGGGCACGAACACAGTGTACGACTACA
ATGTGGCGAATGTCGGTTGTGGCAACGCCCTCACCCTGACCTTGGAGTGG
GATCCTCGGACCATTTTATCCGAATATAGCTCAAGCTACTACGTTGCCAC
CTACATGGAACTCTTGGTCACCGAGCCAACAGGGGCCGAACTGCCTATCG
ACGAGTCGGTGAGGTCTCCAACGCTTTACGTAATACTTTTGCTCAATCTG
CAAAGGCACCTGAGGTCCCCCCTGAAAGCGCTGTCGATGTCTGTAGTTTC
GCCCGCTGTTGATAATACAGTGGGTTTCATAGTTGCTTCACTGTCAGCGT
AAAGTAACCGTCAATCATCCGCCCCCTGTCAAACACCATTCCTGCGTATT
TCGCGGGTCTCCGCGTGTTCGTCTCCCTATCTCCAAACCGTGCAGACCAT
TGGGCTTCACTCTTCCGGAGACTCGTATCCGATTGTCTACACGGTGTATG
GTGACAACCCCGACGCTCTCGGTACCTATAAAATTGAAGTGTACGAAAGG
GGAGTCCCACTTGGAACGGAGTGGACTCTCACTGCCAAAATCCGCGATGA
AGAGGTATGGGTCGAGAGTGGTGTCCACGACTCGAGTCCCAGCAACGATA
TCACAGAGCTAGAAATTGTTCTTGATGATATCTCGAGGTACGAGTGTTAA
GCCTAACTCGGGAAGAGCGACACAAGCCCTAGGAAGAAGCGAGGGCGAAT
GGTTTCGGTTGCCGGGATTACGAACGAAGTACATAGTTGTTCCATCATTT
TGTTTAAATCGTTCAGAGCGCCTTGCGTCGTTGGGAACATCGGAGAACGG
ATTCTCCATCACTTGGAAAACGATGTTGCGGTCGTCAAACGTTGACGCTT
ACTTCCTGCAGTAATAATATTAACAGTACAAAGGAGTGGCGCTGTGTGTT
ACGCATTGGCGGCTTATTCATTCTTGTCGATTGGGTAGAAGGGATCTCCT
GTCCCGAGTGAACTCGTTTGTCGGCTTTCGAATGTGTAATAAGATAAAGA
CAGTTTTTTGTAGAGTGGGTCGAGGTCGTGCATTTCTGGTAAAAGTTGTT
GAATGTGGCACAAAAGGTCGATCAAGTGACGCACGATATCACGATGGGGT
CACTGTTTGCGGGAGCAAGGCGCTCGTCAGGAAGACGCATGCATGCGGAT
CATCTCGAGGACTTCGTGGCTGGGTGGGAAATAGAAGAGGCATTTTTGGT
TTCCTCATGACGCTAGCGTTATTTCTGGAAGAAATTGTCAAGCGTAATTC
AAGAGGGCCAAAAATATACCTTAATATACTCGTATCAAGCCTTCAATCAA
GTTATGTGTTTTCACTTAGGACGCTTCGTTCGAGAGCTTTTCGAAGAACT
ACACGTAATAAAGTAATGTTGTCGTTGTTGAGTCACAATGAGCGTGTTTG
TTGCTTACCCCAGAATATCTACTCTACACAGGGATACGTCCTGCTGGGGT
CTGTTGATCAGGGGGAGGAGATCAGCAATGGAAGCATGCCCCTCCTTCTA
GTCTAAGAGAGTCGGTACTATTGTTTGTAATCAGGTTCAGCATACTCTGG
CTAAATGTGATGCAGCATCGCTGCCGATTCAGAGAGTAAAATATAAACAT
TCACGTAGCGCCTACAACAAAATGAACAAACGGTTAGGGGGTTGCTACAT
TATGCATCCACAGGACTCGACACTGCTGCGGCCTCGGTCCACCTCATGCC
CTAACTGCTGTCTTAGGCTTGTCTACTGGGACTAAGCGCCGTCGCCCCAA
GGGCTCTACATCCTCCCGAGCGGTACCAACATTCTTATCCTTATTATTCT
CGCTCGCTTTTTACAGGGATCTAGCCGCGTGTTTAACCTCTTCTACGAGG
CCACAAACCTGCGCCCTCAAGTT
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Coding sequence (CDS) from alignment at P-canaliculata_contig9999:1912..7384-

>mRNA_P-canaliculata_contig9999.24108.1 ID=mRNA_P-canaliculata_contig9999.24108.1|Name=mRNA_P-canaliculata_contig9999.24108.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=3312bp|location=Sequence derived from alignment at P-canaliculata_contig9999:1912..7384- (Pelvetia canaliculata dioecious)
ATGTGCGAGCTTACGCTCGACCTCCTCGAACCGACCAATATCGAGGAGGT
TAGGGTTGCCTTATGGAAAGGACATCAGCGTGCCCGGAGCTTCAATATCG
TGGTAGATGGGGTAGTGATGGGCGTGTTCACGTCAAGCGGGACGACGGAG
AGCTTCGAGACGTACGAGCTGACGGCAACGCTGGCATCCAGGGTCGTCCT
CCAGGCTCAACACACGGCCGATGACAACAGCTGGTTCAGCCTTCTTGAGA
TGTGCGAGCTTACGCTCGACCTCCTCGAACCGACCAATATCGAGGAGGTT
AGGGTTGCCTTATGGAAAGGACATCAGCGTGCCCGGAGCTTCAATATCGT
GGTAGATGGGGTAGTGATGGGCGTGTTCACGTCAAGCGGGACGACGGAGA
GCTTCGAGACGTACGAGCTGACGGCAACGCTGGCATCCAGGGTCGTCCTC
CAGGCTCAACACACGGCCGATGACAACAGCTGGTTCAGCCTTCTTGAGAT
CCAGCTTATGACTGAGTCTGAGGTTGTCACCTCCCCGCCTGTTCAGCCCA
CGGACTCAGATCCAGCTTATGACTGAGTCTGAGGTTGTCACCTCCCCGCC
TGTTCAGCCCACGGACTCAGGCTGCTCCACCGGGTCCATCCGGTCTTCGT
TGGAGGTCCAGCTGAGCTACGCTGGTGCGGGAAGGTACTTGGACCTCAAC
GCCGAAGAACCGTCTGGAGCGGTAGTGGATCAGTATGATAAGGGGGCTGC
TCCACCGGGTCCATCCGGTCTTCGTTGGAGGTCCAGCTGAGCTACGCTGG
TGCGGGAAGGTACTTGGACCTCAACGCCGAAGAACCGTCTGGAGCGGTAG
TGGATCAGTATGATAAGGGGGACGTCGGCGTACTCACCAGCGTCGGTTTC
TACGATGATCCTGGAATGAAGTATACAACGTATACCCTTATGAACGGCCT
GGACGCTACTGAAGACCCTGTACTTGGCGACTACACCTTTTGGGTCAAAG
GAGGGGAAGAGGGCGAGGAGTACCTGTTGACCGCTCGCGCTAGCGGCGAA
CTGATGTGGGCTGTCGAAGGCATGGTCGGGTCCGACCCCTGGGACGACGA
CCAACCCACGTATACTGCAACGATCACGGAGTACGAGGAGAGCGATTGCA
AGAGCGAAACTTATGGACGTCGGCGTACTCACCAGCGTCGGTTTCTACGA
TGATCCTGGAATGAAGTATACAACGTATACCCTTATGAACGGCCTGGACG
CTACTGAAGACCCTGTACTTGGCGACTACACCTTTTGGGTCAAAGGAGGG
GAAGAGGGCGAGGAGTACCTGTTGACCGCTCGCGCTAGCGGCGAACTGAT
GTGGGCTGTCGAAGGCATGGTCGGGTCCGACCCCTGGGACGACGACCAAC
CCACGTATACTGCAACGATCACGGAGTACGAGGAGAGCGATTGCAAGAGC
GAAACTTATGGCGAATGTCAGCCCGACACCATCAGCTTCGATGGCACGCC
TCCTTGTACCGACTGCCCCTTCGGAGACGTGACGATATCAGCAGGACAGA
CAGAATGCGTTCTTGGAGGCGAATGTCAGCCCGACACCATCAGCTTCGAT
GGCACGCCTCCTTGTACCGACTGCCCCTTCGGAGACGTGACGATATCAGC
AGGACAGACAGAATGCGTTCTTGGAGCCTTGGTGTACCTCAATTTGCCCC
AGAGCGTGGCTGACGCTATCGTCGAAGATCCTTGGTGTACCTCAATTTGC
CCCAGAGCGTGGCTGACGCTATCGTCGAAGATGCCGTCGGTGGGTTTGCA
GGACCAGGATGGGCCGTTTTCGATGACCGCGCCTGGCTTCGTGTCCTCCT
TGCGGAGGACGCCAACGTGCTTTCCCTGGCCGGAACATTCCATCGTTGGG
AGGATGTCGACCCCACCATCCCCGCCTCTGCCGTGATCTTTGCCTACATC
TACACGGACGACGATCCGGACAATTTTCTCAGCTCCCAGGGCACCCTCGA
TACTTCCACTGGCGCGTTCACCGTTGTCGTTGAGGATGTACCCACTGGCG
AGAGCAGTCTCGTTCTGAGCTTTGCCATTTTGGATTCCGCCGATGCCCCT
CCTGATATGGGCACGAACACAGTGTACGACTACAATGTGGCGAATGTCGG
TTGTGGCAACGCCCTCACCCTGACCTTGGAGTGGGATCCTCGGACCATTT
TATCCGAATATAGCTCAAGCTACTACGTTGCCACCTACATGGAACTCTTG
GTCACCGAGCCAACAGGGGCCGAACTGCCTATCGACGAGTCGGCCGTCGG
TGGGTTTGCAGGACCAGGATGGGCCGTTTTCGATGACCGCGCCTGGCTTC
GTGTCCTCCTTGCGGAGGACGCCAACGTGCTTTCCCTGGCCGGAACATTC
CATCGTTGGGAGGATGTCGACCCCACCATCCCCGCCTCTGCCGTGATCTT
TGCCTACATCTACACGGACGACGATCCGGACAATTTTCTCAGCTCCCAGG
GCACCCTCGATACTTCCACTGGCGCGTTCACCGTTGTCGTTGAGGATGTA
CCCACTGGCGAGAGCAGTCTCGTTCTGAGCTTTGCCATTTTGGATTCCGC
CGATGCCCCTCCTGATATGGGCACGAACACAGTGTACGACTACAATGTGG
CGAATGTCGGTTGTGGCAACGCCCTCACCCTGACCTTGGAGTGGGATCCT
CGGACCATTTTATCCGAATATAGCTCAAGCTACTACGTTGCCACCTACAT
GGAACTCTTGGTCACCGAGCCAACAGGGGCCGAACTGCCTATCGACGAGT
CGACCATTGGGCTTCACTCTTCCGGAGACTCGTATCCGATTGTCTACACG
GTGTATGGTGACAACCCCGACGCTCTCGGTACCTATAAAATTGAAGTGTA
CGAAAGGGGAGTCCCACTTGGAACGGAGTGGACTCTCACTGCCAAAATCC
GCGATGAAGAGGTATGGGTCGAGAGTGGTGTCCACGACTCGAGTCCCAGC
AACGATATCACAGAGCTAGAAATTGTTCTTGATGATATCTCGAGGTACGA
GTGTTAAACCATTGGGCTTCACTCTTCCGGAGACTCGTATCCGATTGTCT
ACACGGTGTATGGTGACAACCCCGACGCTCTCGGTACCTATAAAATTGAA
GTGTACGAAAGGGGAGTCCCACTTGGAACGGAGTGGACTCTCACTGCCAA
AATCCGCGATGAAGAGGTATGGGTCGAGAGTGGTGTCCACGACTCGAGTC
CCAGCAACGATATCACAGAGCTAGAAATTGTTCTTGATGATATCTCGAGG
TACGAGTGTTAA
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