mRNA_P-canaliculata_contig99983.24107.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig99983.24107.1
Unique NamemRNA_P-canaliculata_contig99983.24107.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig99983.24107.1 vs. uniprot
Match: A0A6A6Q6J1_9PEZI (Got1/Sft2-like family-domain-containing protein n=1 Tax=Neohortaea acidophila TaxID=245834 RepID=A0A6A6Q6J1_9PEZI)

HSP 1 Score: 213 bits (543), Expect = 3.510e-69
Identity = 104/133 (78.20%), Postives = 122/133 (91.73%), Query Frame = 2
Query:    2 IGVAFCPGGSIFLLLGLLLLFDRALLAMGNILFLLGITLLLGPRRTLIFFARRQKWRGSAAFWRGVALVLLRWTVLGFALEWVGIFYLFGEFFKTLAGFAGGVPVVGPYLARGLRAAGDRAGAADRAHKDLPV 400
            IGVAFC GG++FLLLGL+ LFDRALLAMGNILFL+GITLLLGP+RT +FFAR+QKWRGSAAFW GV L+L+RWT +G  +E VGIFYLFGEFFKTLAGFA G+P++GPYLARGL+ AGD+AGA++RAHKDLPV
Sbjct:   12 IGVAFCSGGALFLLLGLIFLFDRALLAMGNILFLIGITLLLGPQRTFLFFARKQKWRGSAAFWAGVLLILIRWTFVGILVEAVGIFYLFGEFFKTLAGFAYGIPIIGPYLARGLQVAGDKAGASERAHKDLPV 144          
BLAST of mRNA_P-canaliculata_contig99983.24107.1 vs. uniprot
Match: A0A2D3US27_9PEZI (Probable protein GOT1 n=1 Tax=Ramularia collo-cygni TaxID=112498 RepID=A0A2D3US27_9PEZI)

HSP 1 Score: 197 bits (501), Expect = 8.790e-63
Identity = 97/133 (72.93%), Postives = 115/133 (86.47%), Query Frame = 2
Query:    2 IGVAFCPGGSIFLLLGLLLLFDRALLAMGNILFLLGITLLLGPRRTLIFFARRQKWRGSAAFWRGVALVLLRWTVLGFALEWVGIFYLFGEFFKTLAGFAGGVPVVGPYLARGLRAAGDRAGAADRAHKDLPV 400
            IGVAFC GG  FLL GL+LLFDRALLAMGNILFL+GITLLLGP+RT IFFAR+QKW+G+ AFW G+ L+LLRW ++GF ++  G+F LFGEFFKT+AGFA  VPVVGP+LA+GL AAGD+AGA +R HKDLPV
Sbjct:   12 IGVAFCTGGGFFLLFGLILLFDRALLAMGNILFLIGITLLLGPQRTFIFFARKQKWKGTLAFWSGILLILLRWPLVGFVVQCYGMFILFGEFFKTIAGFAYNVPVVGPFLAKGLNAAGDKAGAEERRHKDLPV 144          
BLAST of mRNA_P-canaliculata_contig99983.24107.1 vs. uniprot
Match: UPI000CE200FB (protein transport protein GOT1-like n=1 Tax=Quercus suber TaxID=58331 RepID=UPI000CE200FB)

HSP 1 Score: 197 bits (501), Expect = 8.790e-63
Identity = 97/133 (72.93%), Postives = 115/133 (86.47%), Query Frame = 2
Query:    2 IGVAFCPGGSIFLLLGLLLLFDRALLAMGNILFLLGITLLLGPRRTLIFFARRQKWRGSAAFWRGVALVLLRWTVLGFALEWVGIFYLFGEFFKTLAGFAGGVPVVGPYLARGLRAAGDRAGAADRAHKDLPV 400
            IGVAFC GG  FL+ GL+L FDRALLAMGNILFL+GITLLLG +RT +FFARRQKWRGS AFW G+AL+L+RWT +GFA+E  G+F LFGEFFKT+A FA  +P+VGPYLA+GL+ AGD+AGA +RAHKDLPV
Sbjct:   12 IGVAFCSGGGFFLIAGLILFFDRALLAMGNILFLVGITLLLGLQRTFVFFARRQKWRGSLAFWLGIALILMRWTFVGFAVECYGMFVLFGEFFKTMASFAYNIPIVGPYLAKGLQVAGDKAGANERAHKDLPV 144          
BLAST of mRNA_P-canaliculata_contig99983.24107.1 vs. uniprot
Match: A0A4U0WU69_9PEZI (Uncharacterized protein n=3 Tax=Friedmanniomyces TaxID=329881 RepID=A0A4U0WU69_9PEZI)

HSP 1 Score: 196 bits (498), Expect = 2.520e-62
Identity = 97/133 (72.93%), Postives = 113/133 (84.96%), Query Frame = 2
Query:    2 IGVAFCPGGSIFLLLGLLLLFDRALLAMGNILFLLGITLLLGPRRTLIFFARRQKWRGSAAFWRGVALVLLRWTVLGFALEWVGIFYLFGEFFKTLAGFAGGVPVVGPYLARGLRAAGDRAGAADRAHKDLPV 400
            +GVAFC GG  FL+ GL+L FDRALLAMGNILFL+GITLLLGP RT  FFAR+ KWRGSAAFW G+ L+L+RWT++GF +E  GIF LFGEFFKT+AGFA  +PVVGPYLA+ L+ AGD+AGA DRAHKDLPV
Sbjct:   12 VGVAFCTGGFSFLIFGLILFFDRALLAMGNILFLIGITLLLGPARTFAFFARKNKWRGSAAFWAGIVLILVRWTLVGFVVECYGIFVLFGEFFKTIAGFAYNIPVVGPYLAKVLQVAGDKAGANDRAHKDLPV 144          
BLAST of mRNA_P-canaliculata_contig99983.24107.1 vs. uniprot
Match: UPI001D66E0E4 (uncharacterized protein n=1 Tax=Passalora fulva TaxID=5499 RepID=UPI001D66E0E4)

HSP 1 Score: 196 bits (497), Expect = 3.580e-62
Identity = 97/133 (72.93%), Postives = 113/133 (84.96%), Query Frame = 2
Query:    2 IGVAFCPGGSIFLLLGLLLLFDRALLAMGNILFLLGITLLLGPRRTLIFFARRQKWRGSAAFWRGVALVLLRWTVLGFALEWVGIFYLFGEFFKTLAGFAGGVPVVGPYLARGLRAAGDRAGAADRAHKDLPV 400
            IGVAFC GG  FLL GL+LLFDRALLAMG+ILFL+GITLLLGP RT +FFAR+QKWRG+AAFW G+ L+L+RW  +GF ++  G+F LFGEFFKT+AGFA  VPVVGPYLAR L  AGD+AGA +RAHKDLPV
Sbjct:   12 IGVAFCTGGGFFLLFGLILLFDRALLAMGDILFLIGITLLLGPSRTFLFFARKQKWRGTAAFWAGIGLILVRWPFVGFVVQCYGMFILFGEFFKTIAGFAYNVPVVGPYLARALSVAGDKAGAEERAHKDLPV 144          
BLAST of mRNA_P-canaliculata_contig99983.24107.1 vs. uniprot
Match: A0A0F4GFK4_9PEZI (Got1 family protein n=5 Tax=Zymoseptoria TaxID=1047167 RepID=A0A0F4GFK4_9PEZI)

HSP 1 Score: 195 bits (496), Expect = 5.080e-62
Identity = 100/132 (75.76%), Postives = 115/132 (87.12%), Query Frame = 2
Query:    5 GVAFCPGGSIFLLLGLLLLFDRALLAMGNILFLLGITLLLGPRRTLIFFARRQKWRGSAAFWRGVALVLLRWTVLGFALEWVGIFYLFGEFFKTLAGFAGGVPVVGPYLARGLRAAGDRAGAADRAHKDLPV 400
            GVAFC GG+ FLLLGL+LLFDR+LLAMGNILFL+GITLLLGP RTL FF+RRQKWRG+ AFW GV+L+LLRW ++GF ++  G+F LFGEFFKTLAGF  GVPVVGP LAR L AAGD+AGA +RAHKDLPV
Sbjct:   13 GVAFCTGGTAFLLLGLILLFDRSLLAMGNILFLIGITLLLGPYRTLAFFSRRQKWRGTLAFWTGVSLILLRWPLVGFLVQIYGMFILFGEFFKTLAGFVYGVPVVGPVLARVLSAAGDKAGADERAHKDLPV 144          
BLAST of mRNA_P-canaliculata_contig99983.24107.1 vs. uniprot
Match: A0A1V8TGZ8_9PEZI (Uncharacterized protein n=3 Tax=Rachicladosporium TaxID=470018 RepID=A0A1V8TGZ8_9PEZI)

HSP 1 Score: 195 bits (495), Expect = 7.210e-62
Identity = 94/133 (70.68%), Postives = 114/133 (85.71%), Query Frame = 2
Query:    2 IGVAFCPGGSIFLLLGLLLLFDRALLAMGNILFLLGITLLLGPRRTLIFFARRQKWRGSAAFWRGVALVLLRWTVLGFALEWVGIFYLFGEFFKTLAGFAGGVPVVGPYLARGLRAAGDRAGAADRAHKDLPV 400
            IGVAFC GG  FL+ GL+L FDRALLAMGNILFL+GITLLLGP+RT +FFAR+ KW+GS AFW G+ L+L++WT++G  +E  G+F LFGEFFKT+AGFA  +PVVGPYLA+GL+ AGDRAGA +RAHKDLPV
Sbjct:   12 IGVAFCSGGIFFLIFGLILFFDRALLAMGNILFLIGITLLLGPQRTFVFFARKNKWKGSLAFWAGIVLILVKWTLVGMVVEGYGMFVLFGEFFKTIAGFAYNIPVVGPYLAKGLQVAGDRAGANERAHKDLPV 144          
BLAST of mRNA_P-canaliculata_contig99983.24107.1 vs. uniprot
Match: A0A6J3MGG8_9PEZI (Got1-domain-containing protein n=1 Tax=Dissoconium aciculare CBS 342.82 TaxID=1314786 RepID=A0A6J3MGG8_9PEZI)

HSP 1 Score: 194 bits (494), Expect = 1.020e-61
Identity = 96/133 (72.18%), Postives = 113/133 (84.96%), Query Frame = 2
Query:    2 IGVAFCPGGSIFLLLGLLLLFDRALLAMGNILFLLGITLLLGPRRTLIFFARRQKWRGSAAFWRGVALVLLRWTVLGFALEWVGIFYLFGEFFKTLAGFAGGVPVVGPYLARGLRAAGDRAGAADRAHKDLPV 400
            +GVAFC GG  FLL GL+L FDRALL+MGNILFL+GITLLLGP+RT  FF R+QKWRG+ AFW GV L+L RWT +GFA++  G+F LFGEFFKT+AGFA  +PVVGPYLARGL+ AG++AGA DRAHKDLPV
Sbjct:   12 VGVAFCSGGVFFLLFGLILFFDRALLSMGNILFLVGITLLLGPQRTAAFFLRKQKWRGTTAFWLGVVLILSRWTFIGFAVQCYGMFILFGEFFKTIAGFAYNIPVVGPYLARGLQVAGEKAGANDRAHKDLPV 144          
BLAST of mRNA_P-canaliculata_contig99983.24107.1 vs. uniprot
Match: N1QAB2_PSEFD (Uncharacterized protein n=4 Tax=Mycosphaerellaceae TaxID=93133 RepID=N1QAB2_PSEFD)

HSP 1 Score: 192 bits (488), Expect = 8.400e-61
Identity = 94/133 (70.68%), Postives = 112/133 (84.21%), Query Frame = 2
Query:    2 IGVAFCPGGSIFLLLGLLLLFDRALLAMGNILFLLGITLLLGPRRTLIFFARRQKWRGSAAFWRGVALVLLRWTVLGFALEWVGIFYLFGEFFKTLAGFAGGVPVVGPYLARGLRAAGDRAGAADRAHKDLPV 400
            IGVAFC GG  FLL GL+LLFDRALLAMG+ILFL+GITLLLGP+RT  FFAR+QKWRGS AFW G+ L+L+RW  +GF ++  G+F LFGEFFKTLA FA  +PV+GPY+A+GL  AGD+AGA +RAHKDLPV
Sbjct:   12 IGVAFCTGGGFFLLFGLILLFDRALLAMGDILFLIGITLLLGPQRTFAFFARKQKWRGSLAFWAGILLILIRWPFIGFLVQTYGMFILFGEFFKTLASFAYNIPVIGPYVAKGLSVAGDKAGAEERAHKDLPV 144          
BLAST of mRNA_P-canaliculata_contig99983.24107.1 vs. uniprot
Match: A0A150UVA8_9PEZI (Uncharacterized protein (Fragment) n=1 Tax=Acidomyces richmondensis BFW TaxID=766039 RepID=A0A150UVA8_9PEZI)

HSP 1 Score: 188 bits (478), Expect = 1.900e-59
Identity = 93/121 (76.86%), Postives = 108/121 (89.26%), Query Frame = 2
Query:    2 IGVAFCPGGSIFLLLGLLLLFDRALLAMGNILFLLGITLLLGPRRTLIFFARRQKWRGSAAFWRGVALVLLRWTVLGFALEWVGIFYLFGEFFKTLAGFAGGVPVVGPYLARGLRAAGDRA 364
            IGVAFC GG  FL+ GL+L FDRALLAMGNILFL+GITLLLGP+RT +FFAR+QKWRGSAAFW G+ L+L+RWT++GFA+E  GIF LFGEFFKT+AGFA  +PVVGPYLARGL+AAGDRA
Sbjct:   12 IGVAFCSGGFFFLVFGLILFFDRALLAMGNILFLVGITLLLGPQRTFLFFARKQKWRGSAAFWAGIFLILMRWTLIGFAIECYGIFVLFGEFFKTIAGFAYNIPVVGPYLARGLQAAGDRA 132          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig99983.24107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A6Q6J1_9PEZI3.510e-6978.20Got1/Sft2-like family-domain-containing protein n=... [more]
A0A2D3US27_9PEZI8.790e-6372.93Probable protein GOT1 n=1 Tax=Ramularia collo-cygn... [more]
UPI000CE200FB8.790e-6372.93protein transport protein GOT1-like n=1 Tax=Quercu... [more]
A0A4U0WU69_9PEZI2.520e-6272.93Uncharacterized protein n=3 Tax=Friedmanniomyces T... [more]
UPI001D66E0E43.580e-6272.93uncharacterized protein n=1 Tax=Passalora fulva Ta... [more]
A0A0F4GFK4_9PEZI5.080e-6275.76Got1 family protein n=5 Tax=Zymoseptoria TaxID=104... [more]
A0A1V8TGZ8_9PEZI7.210e-6270.68Uncharacterized protein n=3 Tax=Rachicladosporium ... [more]
A0A6J3MGG8_9PEZI1.020e-6172.18Got1-domain-containing protein n=1 Tax=Dissoconium... [more]
N1QAB2_PSEFD8.400e-6170.68Uncharacterized protein n=4 Tax=Mycosphaerellaceae... [more]
A0A150UVA8_9PEZI1.900e-5976.86Uncharacterized protein (Fragment) n=1 Tax=Acidomy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig99983contigP-canaliculata_contig99983:514..1018 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons3
Model size402
Cds size360
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig99983.24107.1prot_P-canaliculata_contig99983.24107.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig99983 554..1018 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817358.82287-UTR-P-canaliculata_contig99983:513..5531622817358.82287-UTR-P-canaliculata_contig99983:513..553Pelvetia canaliculata dioeciousUTRP-canaliculata_contig99983 514..553 -
1693495245.8982189-UTR-P-canaliculata_contig99983:513..5531693495245.8982189-UTR-P-canaliculata_contig99983:513..553Pelvetia canaliculata dioeciousUTRP-canaliculata_contig99983 514..553 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817358.843047-CDS-P-canaliculata_contig99983:553..6401622817358.843047-CDS-P-canaliculata_contig99983:553..640Pelvetia canaliculata dioeciousCDSP-canaliculata_contig99983 554..640 -
1693495245.9077892-CDS-P-canaliculata_contig99983:553..6401693495245.9077892-CDS-P-canaliculata_contig99983:553..640Pelvetia canaliculata dioeciousCDSP-canaliculata_contig99983 554..640 -
1622817358.8607774-CDS-P-canaliculata_contig99983:694..9411622817358.8607774-CDS-P-canaliculata_contig99983:694..941Pelvetia canaliculata dioeciousCDSP-canaliculata_contig99983 695..941 -
1693495245.919233-CDS-P-canaliculata_contig99983:694..9411693495245.919233-CDS-P-canaliculata_contig99983:694..941Pelvetia canaliculata dioeciousCDSP-canaliculata_contig99983 695..941 -
1622817358.8798308-CDS-P-canaliculata_contig99983:992..10181622817358.8798308-CDS-P-canaliculata_contig99983:992..1018Pelvetia canaliculata dioeciousCDSP-canaliculata_contig99983 993..1018 -
1693495245.9286864-CDS-P-canaliculata_contig99983:992..10181693495245.9286864-CDS-P-canaliculata_contig99983:992..1018Pelvetia canaliculata dioeciousCDSP-canaliculata_contig99983 993..1018 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig99983.24107.1

>prot_P-canaliculata_contig99983.24107.1 ID=prot_P-canaliculata_contig99983.24107.1|Name=mRNA_P-canaliculata_contig99983.24107.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=120bp
NRRRILPRRIHLPPPRPPPPLRPRPARHGKHPLPARHNPPPRPAPHAHLL
RAPPKVARQRGLLARRGTRPPALDGAGLRAGVGGDFLPVWGVLQDARGLR
GRRAGRGTVFGARPARCGR*
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mRNA from alignment at P-canaliculata_contig99983:514..1018-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig99983.24107.1 ID=mRNA_P-canaliculata_contig99983.24107.1|Name=mRNA_P-canaliculata_contig99983.24107.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=505bp|location=Sequence derived from alignment at P-canaliculata_contig99983:514..1018- (Pelvetia canaliculata dioecious)
AATCGGCGTCGCATTCTGCCCCGGCGGTGCCCCCCCCCCCCCCCCCTTCC CCCCCCCCCCGCCCCTAACCCCCCTAGGATCCATCTTCCTCCTCCTCGGC CTCCTCCTCCTCTTCGACCGCGCCCTGCTCGCCATGGGAAACATCCTCTT CCTGCTCGGCATAACCCTCCTCCTCGGCCCGCGCCGCACGCTCATCTTCT TCGCGCGCCGCCAAAAGTGGCGCGGCAGCGCGGCCTTCTGGCGCGGCGTG GCACTCGTCCTCCTGCGCTGGACGGTGCTGGGCTTCGCGCTGGAGTGGGT GGGGATTTTTTACCTGTTTGGGGAGTACGTCACCGTCGCTTTGCGGGGGG GTTCGGGGGGGCTGCTGATGCTGCGCAGGTTCTTCAAGACGCTCGCGGGC TTCGCGGGCGGCGTGCCGGTCGTGGGACCGTATTTGGCGCGCGGCCTGCG CGCTGCGGGCGATAGGGCGGGCGCCGCGGATCGCGCGCACAAGGATCTAC CGGTG
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Coding sequence (CDS) from alignment at P-canaliculata_contig99983:514..1018-

>mRNA_P-canaliculata_contig99983.24107.1 ID=mRNA_P-canaliculata_contig99983.24107.1|Name=mRNA_P-canaliculata_contig99983.24107.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=720bp|location=Sequence derived from alignment at P-canaliculata_contig99983:514..1018- (Pelvetia canaliculata dioecious)
AATCGGCGTCGCATTCTGCCCCGGCGAATCGGCGTCGCATTCTGCCCCGG
CGGATCCATCTTCCTCCTCCTCGGCCTCCTCCTCCTCTTCGACCGCGCCC
TGCTCGCCATGGGAAACATCCTCTTCCTGCTCGGCATAACCCTCCTCCTC
GGCCCGCGCCGCACGCTCATCTTCTTCGCGCGCCGCCAAAAGTGGCGCGG
CAGCGCGGCCTTCTGGCGCGGCGTGGCACTCGTCCTCCTGCGCTGGACGG
TGCTGGGCTTCGCGCTGGAGTGGGTGGGGATTTTTTACCTGTTTGGGGAG
ATCCATCTTCCTCCTCCTCGGCCTCCTCCTCCTCTTCGACCGCGCCCTGC
TCGCCATGGGAAACATCCTCTTCCTGCTCGGCATAACCCTCCTCCTCGGC
CCGCGCCGCACGCTCATCTTCTTCGCGCGCCGCCAAAAGTGGCGCGGCAG
CGCGGCCTTCTGGCGCGGCGTGGCACTCGTCCTCCTGCGCTGGACGGTGC
TGGGCTTCGCGCTGGAGTGGGTGGGGATTTTTTACCTGTTTGGGGAGTTC
TTCAAGACGCTCGCGGGCTTCGCGGGCGGCGTGCCGGTCGTGGGACCGTA
TTTGGCGCGCGGCCTGCGCGCTGCGGGCGATAGGTTCTTCAAGACGCTCG
CGGGCTTCGCGGGCGGCGTGCCGGTCGTGGGACCGTATTTGGCGCGCGGC
CTGCGCGCTGCGGGCGATAG
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