mRNA_P-canaliculata_contig9979.24096.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig9979.24096.1
Unique NamemRNA_P-canaliculata_contig9979.24096.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
[Close]
BLAST of mRNA_P-canaliculata_contig9979.24096.1 vs. uniprot
Match: D7FWI0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWI0_ECTSI)

HSP 1 Score: 353 bits (905), Expect = 3.650e-110
Identity = 220/422 (52.13%), Postives = 254/422 (60.19%), Query Frame = 1 
Query:    4 RKEMTDTIKADLERLYPTGCGEHFLAPARQQLLLSVLSLWADLHTDTGYRQGMHELYGMKWARLMFGREFRVEGVLQLWDHIFASSLLEGRPDLPECIEEVAVAMVLSVRDELLAEDSTGCLQLLMRYPPDQSVSTVIDLSIALGQPGGY----RHAPPSMYLGGLSDTAEDDHLRAGSSESGPAWLMDGGKTGGESGNGFSRRIPRSNSNHSREQQQRLRAEEEYGRGLGGA-------------GFGREGGIEARGGDMRNNWQQGLDEFTRRALSAAQDVAKRAVQTVERTQHGG--------GSAPGA----LARRLREVCAAMEAGKTSVHAAAEDIREVARLLEGRKEFNSGRRSSASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGVTRGFSTYSEDDGCADGLYTRDL 1182
            RKEMTDTIKADLERL+PTGCG+HFLAPARQ+LLLSVLS+WADL+T+T YRQ    LYGMKWARLMFGREFRVEGVL LWDHIFASS +EG+PD+PECIE VAVAMV+S+R +LLAED TGCLQLLMRYPPDQ VST I LS++L +        R   PS +    S  A          E  P WL  GG+  G      S R P +  +          A  E+ R  GG               FGR+  +E    + +NNWQQGLDEFTRRA+SAAQ VAK AVQTVERTQ GG        G  P +    L+RRLR  CA ME G+  V  AA++I+EVAR+LE R    S R    S                                 +GVTR FSTYSEDDGCAD LYT+DL
Sbjct:   90 RKEMTDTIKADLERLFPTGCGDHFLAPARQELLLSVLSVWADLNTETAYRQ----LYGMKWARLMFGREFRVEGVLVLWDHIFASSWIEGQPDVPECIENVAVAMVVSIRHQLLAEDCTGCLQLLMRYPPDQGVSTAISLSLSLAKGQSLAAFERSTEPSSFAAASSGRAAPSSSSEIQQEPAPVWLNRGGRDHGS----VSGRSPSATGSAGH-------APSEWRRDDGGGXXVXXXXXXGRARAFGRDERLETER-EAKNNWQQGLDEFTRRAMSAAQGVAKLAVQTVERTQGGGDPRHLRTAGGVPASEALSLSRRLRTACAKMETGEAPVSLAAQEIKEVARILEARSGAPSVREPLRSTNSMGGGGGG-----------------------QGVTRAFSTYSEDDGCADALYTQDL 472
[Close]
BLAST of mRNA_P-canaliculata_contig9979.24096.1 vs. uniprot
Match: A0A6H5KGW7_9PHAE (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGW7_9PHAE)

HSP 1 Score: 294 bits (753), Expect = 2.440e-85
Identity = 225/597 (37.69%), Postives = 259/597 (43.38%), Query Frame = 1 
Query:    4 RKEMTDTIKADLERLYPTGCGEHFLAPARQQLLLSVLSLWADLHTDTGYRQGMHE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LYGMKWARLMFGREFRVEGVLQLWDHIFASSLLEGRPDLPECIEEVAVAMVLSVRDELLAEDSTGCLQLLMRYPPDQSVSTVIDLSIALGQPGGY----RHAPPSMYLGGLSDTAEDDHLRAGSSESGPAWLMDGGKTGGESGNGF-SRRIPRSNSNHSREQQQRLRAEEEYGRGLGGA-------------GFGREGGIEARGGDMRNNWQQGLDEFTRRALSAAQDVAKRAVQTVERTQHGG--------GSAPGA----LARRLREVCAAMEAGKTSVHAAAEDIREVARLLEGRKEFNSGRRSSASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGVTRGFSTYSEDDGCADGLYTRDL 1182
            RKEMTDTIKADLERL+PTGCG+HFLAPARQ+LLLSVLS+WADL+T T YRQGMHE                                                                                                                                                                              LYGMKWARLMFGREFRVEGVL LWDHIFASS +EG+PD+PECIE VAVAMV+S+R +LLAED TGCLQLLMRYPPDQ VST I LS++L +        R   PS +    S  A          E  P WL  GG+     G+G  S R P +             A  E+ R  GG               FGR+  +E    + +NNWQQGLDEFTRRA+SAAQ VAK AVQTVERTQ GG        G  P +    L+RRLR  CA +E G+T V  AA++I+EVAR+LE R    S R    S                                 +GVTR FSTYSEDDGCAD LYT+DL
Sbjct:  130 RKEMTDTIKADLERLFPTGCGDHFLAPARQELLLSVLSVWADLNTGTAYRQGMHEVLAPLILVLEKEVAAATRAEAIAGDSTXXXXXXXXXXXXXXXXXXXXXXXXXXVKASPWVGKSIVNGEPLNAGTHPAFAAILGHGSTPEDLEADAFWLFSAVMSGLERFYEHGEKATSTSALGAGRGGGEGGSVDSPVVEMCKRLQGVRMRAADPELQQHLSHLDISPQAGYLKLYGMKWARLMFGREFRVEGVLVLWDHIFASSWIEGQPDVPECIENVAVAMVVSIRHQLLAEDCTGCLQLLMRYPPDQDVSTAISLSLSLAKGQSLAAFERSTEPSSFSAASSGRAAPSSSSEIQQEPAPVWLNRGGR-----GHGIISGRSPSATGRAGH-------APSEWRRDDGGGXXVXXXXXXGRARAFGRDERLETER-EAKNNWQQGLDEFTRRAMSAAQGVAKLAVQTVERTQGGGDPRHLRTAGGVPASEALSLSRRLRTACAKLETGETPVSLAAQEIKEVARILEARSGAPSVREPLRSTNSMGSGGGG-----------------------QGVTRAFSTYSEDDGCADALYTQDL 690
[Close]
BLAST of mRNA_P-canaliculata_contig9979.24096.1 vs. uniprot
Match: A0A444TDY5_ARMVU (TBC1 domain family member 5 n=1 Tax=Armadillidium vulgare TaxID=13347 RepID=A0A444TDY5_ARMVU)

HSP 1 Score: 87.0 bits (214), Expect = 5.040e-14
Identity = 49/128 (38.28%), Postives = 70/128 (54.69%), Query Frame = 1 
Query:  166 ELYGMKWARLMFGREFRVEGVLQLWDHIFASSLLEGRPDLPECIEEVAVAMVLSVRDELLAEDSTGCLQLLMRYPPDQSVSTVIDLSIALGQPGG------YRHAPPSMY-LGGLSDTAEDDHLRAGS 528
            ++YG++W RLMFGREF    +L +WD IFA S           IE + VAM+  ++D+LL  D T CL LLMRYPP   V ++I  ++   +P G      Y++ P S+  +GG  +       R GS
Sbjct:  406 QVYGIRWVRLMFGREFSFTDLLMVWDAIFADSYSNFL-----LIEYLMVAMLSYIKDQLLEADYTSCLSLLMRYPPSSDVQSIIQTALYFRKPDGSNIPRKYKNVPASLATVGGQQNIHRSPQTRHGS 528
[Close]
BLAST of mRNA_P-canaliculata_contig9979.24096.1 vs. uniprot
Match: A0A1B6M3J3_9HEMI (Rab-GAP TBC domain-containing protein (Fragment) n=1 Tax=Graphocephala atropunctata TaxID=36148 RepID=A0A1B6M3J3_9HEMI)

HSP 1 Score: 80.1 bits (196), Expect = 5.770e-14
Identity = 48/129 (37.21%), Postives = 71/129 (55.04%), Query Frame = 1 
Query:   67 EHFLAPARQQLLLSVLSLWADLHTDTGYRQGMHELYGMKWARLMFGREFRVEGVLQLWDHIFASSLLEGRPDLPECIEEVAVAMVLSVRDELLAEDSTGCLQLLMRYPPDQSVSTVIDLSIALGQPGGY 453
            EH LAP           L  +LH           L+G++W RL+FGREF ++ +L +WD IFA    EG   + + +  V +AM++++R +LL  D TGCL +LM+YP    VS +ID ++ L  P  Y
Sbjct:    1 EHLLAP-----------LDPELHQHLQQMNVTLPLFGIRWLRLLFGREFPLQDLLVMWDAIFA----EG--SMFQLVNYVVIAMLMAIRRQLLISDHTGCLTILMKYPA-MDVSKIIDRALFLKNPQTY 111
[Close]
BLAST of mRNA_P-canaliculata_contig9979.24096.1 vs. uniprot
Match: A0A5N5TGS9_9CRUS (TBC1 domain family member 5 n=1 Tax=Armadillidium nasatum TaxID=96803 RepID=A0A5N5TGS9_9CRUS)

HSP 1 Score: 87.0 bits (214), Expect = 6.300e-14
Identity = 49/128 (38.28%), Postives = 70/128 (54.69%), Query Frame = 1 
Query:  166 ELYGMKWARLMFGREFRVEGVLQLWDHIFASSLLEGRPDLPECIEEVAVAMVLSVRDELLAEDSTGCLQLLMRYPPDQSVSTVIDLSIALGQPGG------YRHAPPSMY-LGGLSDTAEDDHLRAGS 528
            ++YG++W RLMFGREF    +L +WD IFA S           IE + VAM+  ++D+LL  D T CL LLMRYPP   V ++I  ++   +P G      Y++ P S+  +GG  +       R GS
Sbjct:  358 QVYGIRWVRLMFGREFSFTDLLMVWDAIFADSYSNFL-----LIEYLMVAMLSYIKDQLLEADYTSCLSLLMRYPPSSDVQSIIQTALYFRKPDGSNIPRKYKNVPASLATVGGQQNIHRSPQTRHGS 480
[Close]
BLAST of mRNA_P-canaliculata_contig9979.24096.1 vs. uniprot
Match: A0A2Z6QHF3_9GLOM (Rab-GAP TBC domain-containing protein n=2 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6QHF3_9GLOM)

HSP 1 Score: 87.0 bits (214), Expect = 7.550e-14
Identity = 46/103 (44.66%), Postives = 62/103 (60.19%), Query Frame = 1 
Query:  127 DLHTDTGYRQGMHELYGMKWARLMFGREFRVEGVLQLWDHIFASSLLEGRPDLPECIEEVAVAMVLSVRDELLAEDSTGCLQLLMRYPPDQSVSTVIDLSIAL 435
            +LH      +   +LYG++W RL+FGREF ++ VL LWD IFA       P L   ++ V VAM+L +RD+LL  D TGCL +LMRYPP      +I  +I L
Sbjct:  279 ELHERLNELEIEPQLYGIRWIRLLFGREFPLDKVLTLWDGIFAED-----PTL-RIVDHVCVAMMLLIRDDLLKSDYTGCLSMLMRYPPTSDTGVLIKQAIYL 375
[Close]
BLAST of mRNA_P-canaliculata_contig9979.24096.1 vs. uniprot
Match: A0A812ASD9_SEPPH (TBC1D5 n=6 Tax=Sepia pharaonis TaxID=158019 RepID=A0A812ASD9_SEPPH)

HSP 1 Score: 86.7 bits (213), Expect = 1.170e-13
Identity = 45/118 (38.14%), Postives = 67/118 (56.78%), Query Frame = 1 
Query:  124 ADLHTDTGYRQGMHELYGMKWARLMFGREFRVEGVLQLWDHIFASSLLEGRPDLPECIEEVAVAMVLSVRDELLAEDSTGCLQLLMRYPPDQSVSTVIDLSIALGQPGGYRHAPPSMY 477
            A+LH      + + ++YG++W RL+FGREF ++ +L LWD IFA  +  G     + ++ V V M+L +RD LL  D   C+  LMRYPP   V   +D ++ L +P  Y   PP  Y
Sbjct:  783 AELHLHLERLEIVPQIYGIRWVRLLFGREFPMQDLLMLWDAIFADGI--GF----DLVDYVFVGMLLYIRDLLLTSDYPNCMNTLMRYPPVGDVHYFVDKALYLREPNQYPRPPPYSY 894
[Close]
BLAST of mRNA_P-canaliculata_contig9979.24096.1 vs. uniprot
Match: A0A8H6A922_ASPBU (Rab-GAP TBC domain-containing protein n=3 Tax=Aspergillus TaxID=5052 RepID=A0A8H6A922_ASPBU)

HSP 1 Score: 85.5 bits (210), Expect = 1.580e-13
Identity = 54/153 (35.29%), Postives = 81/153 (52.94%), Query Frame = 1 
Query:    7 KEMTDTIKADLERLYPTGCGEHFLAPARQQLLLSVLSLWADLHTDTGYRQGMH------------ELYGMKWARLMFGREFRVEGVLQLWDHIFASSLLEGRPDLPECIEEVAVAMVLSVRDELLAEDSTGCLQLLMRYP---PDQSVSTVID 420
            ++M   I  D++R         F  PA +  +  VL ++A L+ D GYRQ +             +++  +W RL+FGREF  E VL LWD +F+  L       PE ++ V VAM+L +R +LLA DS+  L +L+RYP   P +  S V+D
Sbjct:  110 EQMRADISQDVDRCLQENF--FFREPATKAKMTDVLFIYAKLNPDLGYRQDLELADHLQAQEILPQIFLTRWMRLLFGREFPFEDVLILWDFLFSEGLR------PELVDYVCVAMLLRIRWQLLAADSSTVLTMLLRYPSPHPHEPYSFVLD 254
[Close]
BLAST of mRNA_P-canaliculata_contig9979.24096.1 vs. uniprot
Match: A0A8D9DY72_9HEMI (TBC1 domain family member 5 n=4 Tax=Cacopsylla melanoneura TaxID=428564 RepID=A0A8D9DY72_9HEMI)

HSP 1 Score: 85.5 bits (210), Expect = 1.790e-13
Identity = 49/135 (36.30%), Postives = 73/135 (54.07%), Query Frame = 1 
Query:   67 EHFLAPARQQLLLSVLSLWADLHTDTGYRQGMHELYGMKWARLMFGREFRVEGVLQLWDHIFASSLLEGRPDLPECIEEVAVAMVLSVRDELLAEDSTGCLQLLMRYPPDQSVSTVIDLSIALGQPGGYRHAPPS 471
            EH L PA   L   + +L   L            L+G++W RL+FGREF ++ +L LWD IFA S         E +  V VAM++++RD++++ D   CL  LMRYPP   V+++I+ ++ L  P  Y    PS
Sbjct:  313 EHILKPADPALHAQLYNLKIPL-----------TLFGIRWLRLLFGREFSLQDLLVLWDVIFAESF--------ELVNYVVVAMLVAIRDQVISSDHIECLSYLMRYPPGIDVNSIIEHALHLKYPNLYPEYEPS 428
[Close]
BLAST of mRNA_P-canaliculata_contig9979.24096.1 vs. uniprot
Match: A0A4V5ZYV7_STECR (Rab-GAP TBC domain-containing protein n=1 Tax=Steinernema carpocapsae TaxID=34508 RepID=A0A4V5ZYV7_STECR)

HSP 1 Score: 81.6 bits (200), Expect = 2.050e-13
Identity = 43/103 (41.75%), Postives = 63/103 (61.17%), Query Frame = 1 
Query:  166 ELYGMKWARLMFGREFRVEGVLQLWDHIFASSLLEGRPDLPECIEEVAVAMVLSVRDELLAEDSTGCLQLLMRYPPDQSVSTVIDLSIALGQPGGYRHAPPSM 474
            ++YG++W RL+FGREF +  +L LWD IFA      +P L   ++ + +AM+L +RD LLA D + CLQ LMRYPP   V + I L++ L  P  +   P  +
Sbjct:  106 QIYGIRWLRLLFGREFPMPDLLCLWDAIFAD-----KPTLV-LVDFIFIAMLLQIRDLLLAGDYSMCLQYLMRYPPTVDVHSFIQLALYLKSPKKFARPPAGV 202
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9979.24096.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWI0_ECTSI3.650e-11052.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KGW7_9PHAE2.440e-8537.69Rab-GAP TBC domain-containing protein n=1 Tax=Ecto... [more]
A0A444TDY5_ARMVU5.040e-1438.28TBC1 domain family member 5 n=1 Tax=Armadillidium ... [more]
A0A1B6M3J3_9HEMI5.770e-1437.21Rab-GAP TBC domain-containing protein (Fragment) n... [more]
A0A5N5TGS9_9CRUS6.300e-1438.28TBC1 domain family member 5 n=1 Tax=Armadillidium ... [more]
A0A2Z6QHF3_9GLOM7.550e-1444.66Rab-GAP TBC domain-containing protein n=2 Tax=Rhiz... [more]
A0A812ASD9_SEPPH1.170e-1338.14TBC1D5 n=6 Tax=Sepia pharaonis TaxID=158019 RepID=... [more]
A0A8H6A922_ASPBU1.580e-1335.29Rab-GAP TBC domain-containing protein n=3 Tax=Aspe... [more]
A0A8D9DY72_9HEMI1.790e-1336.30TBC1 domain family member 5 n=4 Tax=Cacopsylla mel... [more]
A0A4V5ZYV7_STECR2.050e-1341.75Rab-GAP TBC domain-containing protein n=1 Tax=Stei... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig9979contigP-canaliculata_contig9979:6387..10767 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score355.1
Seed ortholog evalue4.1e-95
Seed eggNOG ortholog2880.D7FWI0
Preferred nameTBC1D5
KEGG rclassRC00002,RC00078
KEGG koko:K01765,ko:K03843,ko:K18081,ko:K18469
KEGG ReactionR03428,R03429,R05973,R06238
KEGG Pathwayko00510,ko00513,ko00562,ko01100,ko04070,map00510,map00513,map00562,map01100,map04070
KEGG ModuleM00055,M00132
GOsGO:0002090,GO:0002092,GO:0003674,GO:0005096,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005773,GO:0005776,GO:0005794,GO:0005802,GO:0005829,GO:0006810,GO:0006886,GO:0006914,GO:0006950,GO:0007154,GO:0007165,GO:0007186,GO:0007187,GO:0007188,GO:0007193,GO:0008047,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009410,GO:0009605,GO:0009893,GO:0009987,GO:0009991,GO:0010008,GO:0010033,GO:0010243,GO:0010604,GO:0012505,GO:0014070,GO:0014074,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0016197,GO:0016236,GO:0016482,GO:0017016,GO:0017137,GO:0019222,GO:0019899,GO:0023052,GO:0030100,GO:0030234,GO:0030695,GO:0030904,GO:0031000,GO:0031090,GO:0031156,GO:0031267,GO:0031323,GO:0031325,GO:0031338,GO:0031410,GO:0031667,GO:0031982,GO:0031984,GO:0032879,GO:0032991,GO:0033036,GO:0033043,GO:0034613,GO:0035612,GO:0036270,GO:0042147,GO:0042221,GO:0042493,GO:0042594,GO:0042886,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043279,GO:0043547,GO:0043900,GO:0044093,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045184,GO:0045807,GO:0046907,GO:0048259,GO:0048260,GO:0048518,GO:0048519,GO:0048522,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051020,GO:0051049,GO:0051050,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051336,GO:0051345,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0060589,GO:0060627,GO:0061919,GO:0065007,GO:0065009,GO:0070727,GO:0071702,GO:0071705,GO:0090630,GO:0097708,GO:0098588,GO:0098772,GO:0098791,GO:0098796,GO:0098805,GO:1901698,GO:1903664,GO:1903665,GO:1905394
EggNOG free text desc.regulation of vesicle fusion
EggNOG OGsCOG5210@1,KOG1091@2759
Ec32 ortholog descriptionRab-GTPase-TBC domain
Ec32 orthologEc-26_006540.1
EC2.4.1.132,2.4.1.257,2.7.1.159,3.1.3.64,3.1.3.95
COG Functional cat.H
CAZyGT4
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003,ko01009,ko04131
Hectar predicted targeting categoryother localisation
Exons5
Model size2330
Cds size1173
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817357.138051-UTR-P-canaliculata_contig9979:6386..75311622817357.138051-UTR-P-canaliculata_contig9979:6386..7531Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9979 6387..7531 -
1693495244.7542768-UTR-P-canaliculata_contig9979:6386..75311693495244.7542768-UTR-P-canaliculata_contig9979:6386..7531Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9979 6387..7531 -
1622817357.236456-UTR-P-canaliculata_contig9979:10755..107671622817357.236456-UTR-P-canaliculata_contig9979:10755..10767Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9979 10756..10767 -
1693495244.8200035-UTR-P-canaliculata_contig9979:10755..107671693495244.8200035-UTR-P-canaliculata_contig9979:10755..10767Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9979 10756..10767 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817357.1525204-CDS-P-canaliculata_contig9979:7531..78131622817357.1525204-CDS-P-canaliculata_contig9979:7531..7813Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9979 7532..7813 -
1693495244.7659237-CDS-P-canaliculata_contig9979:7531..78131693495244.7659237-CDS-P-canaliculata_contig9979:7531..7813Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9979 7532..7813 -
1622817357.1661797-CDS-P-canaliculata_contig9979:8119..82461622817357.1661797-CDS-P-canaliculata_contig9979:8119..8246Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9979 8120..8246 -
1693495244.7757323-CDS-P-canaliculata_contig9979:8119..82461693495244.7757323-CDS-P-canaliculata_contig9979:8119..8246Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9979 8120..8246 -
1622817357.18288-CDS-P-canaliculata_contig9979:8718..91761622817357.18288-CDS-P-canaliculata_contig9979:8718..9176Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9979 8719..9176 -
1693495244.7860787-CDS-P-canaliculata_contig9979:8718..91761693495244.7860787-CDS-P-canaliculata_contig9979:8718..9176Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9979 8719..9176 -
1622817357.1999059-CDS-P-canaliculata_contig9979:9579..97291622817357.1999059-CDS-P-canaliculata_contig9979:9579..9729Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9979 9580..9729 -
1693495244.7987695-CDS-P-canaliculata_contig9979:9579..97291693495244.7987695-CDS-P-canaliculata_contig9979:9579..9729Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9979 9580..9729 -
1622817357.218225-CDS-P-canaliculata_contig9979:10599..107551622817357.218225-CDS-P-canaliculata_contig9979:10599..10755Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9979 10600..10755 -
1693495244.8092785-CDS-P-canaliculata_contig9979:10599..107551693495244.8092785-CDS-P-canaliculata_contig9979:10599..10755Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9979 10600..10755 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig9979.24096.1prot_P-canaliculata_contig9979.24096.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig9979 7532..10755 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig9979.24096.1

>prot_P-canaliculata_contig9979.24096.1 ID=prot_P-canaliculata_contig9979.24096.1|Name=mRNA_P-canaliculata_contig9979.24096.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=391bp
MTDTIKADLERLYPTGCGEHFLAPARQQLLLSVLSLWADLHTDTGYRQGM
HELYGMKWARLMFGREFRVEGVLQLWDHIFASSLLEGRPDLPECIEEVAV
AMVLSVRDELLAEDSTGCLQLLMRYPPDQSVSTVIDLSIALGQPGGYRHA
PPSMYLGGLSDTAEDDHLRAGSSESGPAWLMDGGKTGGESGNGFSRRIPR
SNSNHSREQQQRLRAEEEYGRGLGGAGFGREGGIEARGGDMRNNWQQGLD
EFTRRALSAAQDVAKRAVQTVERTQHGGGSAPGALARRLREVCAAMEAGK
TSVHAAAEDIREVARLLEGRKEFNSGRRSSASASASGRGNGSSSGNSSSG
NSSNRSLMGGGGGGGRGVTRGFSTYSEDDGCADGLYTRDL*
back to top

mRNA from alignment at P-canaliculata_contig9979:6387..10767-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig9979.24096.1 ID=mRNA_P-canaliculata_contig9979.24096.1|Name=mRNA_P-canaliculata_contig9979.24096.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=4381bp|location=Sequence derived from alignment at P-canaliculata_contig9979:6387..10767- (Pelvetia canaliculata dioecious)
AAGCGCAAGGAAATGACGGACACGATCAAGGCCGACCTGGAAAGGTTGTA
CCCGACGGGCTGCGGGGAGCACTTCCTCGCTCCTGCCAGGCAGCAGCTAT
TGCTGAGCGTGCTGTCCCTCTGGGCGGACCTGCATACGGACACGGGGTAT
CGCCAGGGGATGCACGAAGTGCTGGCCCCGCTGGTTCTGGCGCTAGAGAA
AGAAGTCGCCGCTGCCACGCGCGTCGCGGCAGACGCGGACTCGGCCGCTG
ACGGAAGCGGCGCAACCACGGCGCCATCGCGATGGATCGGGACGGCGAAG
GTTGACGGAAACTTTATGGAGGCGTCCGCGCACGCCGGTATCGGGGCCAC
GCTCGGCGACGGCTCTTCCTCGGAAGACCTCGAAGCGGACGCCTTCTGGC
TGTTCAGCGCCGTCATGACCGGTCTGGAAGGTTTTTATGAGCACGGAGGC
GTGCGGTCGGATCGGCGGCGGTCCGGAGGCGGCGACCCAGGCGGCGAGCG
CGGGCTAGATTCGCCCGTCGTCGAGATGTGCAAGAGGCTCCAGGGGAAGC
GCATGCGGGAGGCTGACCCCGAGCTGCAGAAACACCTTGCAGATCTCGAT
ATAAGCCCACAGGTGAGTGTTGAGTCGGGGATCGGACAAGGGTGATCATA
TTTGCGCTGCTGCCGTACCCCATGATATTTCGATTGCTTTGTCTAGCCTA
AACTTCACGCGCGTCTGTCGGTGTCCTGTGTCTGGTGCAACAGCCATTCC
GCATGACACGCATTCAAGCGCCTCATCTGCTCATCTGATCTGGATGTTAA
AATACTGTACCGTAAACATTTATTTATTTGTATTAGCGCGAGAGATCGGT
TCACCCGATTTGCCTCTTCGCATGACACGCACGCAAGCCTCATACACGGA
CGCAAGCGCTTCATTTGATCTGGATGTTAAAATATTGCACCATAAACATC
CTTTGTTTTTTAGTTAGCTCGAGAGATCGGTTCACCCAATCTGTCTGTTC
GTTTTGAATGCAAAAAATATGCCTGGTGTGCAATGTAGCTCTATGGAATG
AAGTGGGCGCGGCTGATGTTCGGCCGAGAATTCCGTGTGGAGGGGGTGCT
GCAGCTGTGGGATCACATCTTCGCGTCGTCCTTGCTCGAAGGCCGGCCAG
ACCTGCCGGAGTGCATTGAAGAGGTCGCCGTCGCCATGGTGCGTGTTTTG
TCGGAATCCCCCTGTAGGAGGCGTGTTTTGTTGGAGTTACACTGGAAGGC
TACTGATCCTTCTCCTGCTGCAGCATCCACTGCTGCTGCCACTGCGTCAA
TCGTCAAACGAGGTTCACTTCTGTTCTGATATAGTCGCAAAGGCAATCAT
TCGCGATGTACAAAGGGTACCAGATACTTCAAGCATAACAAGCGCGTTTG
CGGTCTGTGCGGACACACGCGCGTGGTACAACAAACGCGTTTCTGGTCGG
TTCGGGCACACGTGCGTGGTCGTCCAGTACAATTAGGTAAAACCACCTTA
CACTGGCGTGGGAAAACGCAAAGCTTTCCAGCCTAAGGCATCCTCCCTAC
CCTTCCAAACACTCCGCGGTCAATGCGAAACCCTGTGGCAGGTTCTGTCG
GTGCGCGATGAGCTTCTCGCCGAGGATTCGACGGGCTGCCTGCAGCTTCT
CATGCGCTACCCGCCAGACCAGAGCGTGTCCACCGTCATCGACCTCTCCA
TTGCTCTAGGACAACCTGGAGGCTACAGGCACGCCCCGCCTTCGATGTAT
CTCGGCGGTCTCTCAGACACTGCGGAGGACGATCATCTCCGGGCGGGATC
GTCAGAGTCCGGACCCGCGTGGTTAATGGACGGCGGTAAGACGGGCGGGG
AATCAGGCAACGGTTTTTCTCGACGTATTCCTAGGAGCAACTCGAACCAC
AGCCGGGAACAACAGCAGCGACTCAGGGCTGAGGAGGAGTACGGGCGGGG
TCTCGGCGGCGCGGGTTTCGGGAGAGAAGGTGGCATAGAGGCGAGGGGAG
GAGACATGAGGAACAACTGGCAGCAAGGGCTGGACGAGTTCACCCGCAGG
TACAGGCAGTGCTTCCCCCTCTATCGAAGACACACTGCTGGCCTGTTCTA
TTGAAGATAGTTTTGTAAGGCTGACCTGTTCTGGGTAGAGATCGACGTGA
CTGCCTTGACCATGGGATTATCGTAGAGAGAATTGCTACTGCCGGTATTG
TTGTCGTCGTGGCTGTCAAGAACCCGCCCCTGTCCCCTGTCCCCTATCCC
CTCTCCCCCTTATTTGTTACAACAACTTTAGGAAGTGTTAAATGTTTCCT
AATATTGTACTTCAGGGAGGGGGAAACCATCATCAACTGACTCGTTCTCT
CGACCTTTCTAGAATTCCAGCACCATTTCGGTGGCGGGCCGTGATACGCA
GACCCACGCTATAGGTTGAAGCTTGATGCTAACTGATGAGTGTTACCAAC
ATCTCCAACCCACCGTGCGCTGCGTCGACATCATACTTTTATGCATTAAC
CTGCCCGTATGCACCGCACAGGGCATTGTCCGCCGCCCAGGACGTTGCTA
AGAGGGCGGTACAGACTGTGGAGCGTACTCAGCACGGGGGGGGGTCGGCA
CCAGGGGCGCTGGCACGAAGGCTTCGGGAAGTGTGCGCCGCGATGGAGGT
ACGGAGGTGAAGTTTGGGAAATCGTGGGGCGAAACGCTGGTTATGGTGCT
GAAGGATTCGTTCACAGACGGAGTATGTTGCTCTCTATCACATTTTTTCG
ATACTGGATCCCTGTAATTTTCAAGCCGGTAATGCGAACGCAATATTTTC
TCTGCCACTTGTACCGTAACGCTCCAATTATTGTAGGTTGTGTATCGTGT
CTTGTTGCACCGATGTAGTACACTGCGTGCTGAACCGATAGTACATTGTG
TCCTTTTGTCCTTTTGTTGACTGTGCTACGACTCTCGCTCTCTTGCTACC
ACAGGCCGGGAAGACGTCGGTGCACGCGGCCGCTGAGGACATCAGAGAGG
TGGCGCGGTTACTCGAGGGGCGGAAGGAGTTCAACTCGGGAAGGCGGTCG
TCGGCCAGTGCGAGTGCGAGCGGTCGCGGTAACGGTAGCAGTAGCGGTAA
CAGCAGTAGCGGTAACAGTAGCAATCGCAGTCTCATGGGGGGCGGGGGCG
GCGGCGGCAGGGGCGTGACGCGAGGGTTCTCGACCTACTCAGAGGACGAT
GGTTGCGCGGACGGCCTTTACACTCGAGACTTGTGAAGAATCGTCATAAG
GCTTCTTTTTTTTTGGGAGGGTTTGAAATAAAAATCGCGACTCAAACCAG
TTTGTTTTACTGCCGTGTTTGTTGTTTCACGTTCTGACCAAACCGGGACG
GGGAGCCAGTGGGCCAATTAGAGCTATCTCCCGCGGTAAACACAGGGCTG
TGTTTGGTGTTCTCGCTCCTCGTTCCTGTGAATTTTTGGCTTTGACCGTT
TCAAGCCCATGCAAAAATGAGGTCGTCGGGATAAAAGTCGTCGGAAACGG
TAGGAATAATCACATACACGATGATGATAGCACGCTTAAGACTGCGTGTA
GCGGATAGCTTTGGAATAGAGCTCTCTGATTGGTTCCAGCACAGCCCCAG
TTAGGTCGGCGTTTGGCTCCAAAAGCAGGCAGACACAGGGTGTTGAAAAA
CATTAATTTCCGGTCAACAGATGTAGATGGTCGAATAAGGTTATAAAGAT
GTGCAGGGAAATCACACGATTCTAGCGGCGGTGGGCACGGGGACGGCAAC
GGCGATCATGGCTGACTTTCCTTTGCCTCTTTGGTTCCGGGGGGAAAATA
AGTGCTCTGTGGCGTACGTAACGCACGGATGATGCGGGGGCACGCTCTCG
CGGTGGAGAATCAAGTTACTGCAATGGTAATCACCAGGCAGTTTTCGAGA
ACAAACCTCGTTGCTGTAGCTTTCTGTCGTTTGAACGCGGCAGCGGCTCA
CTGTAGGTGCAGCGCGTTGGCGGGGTTCGAGGCCCTCATCTTGCAGCTTT
GCGCCTGAGCCGATCAAGGCTGTAAACGTCGGTTGTTGATTGACTGGCAG
TGCTGCGATACTACGCTTGTTCCCGAGTACCCTGGTAGCGCGCCTGGTGG
CATTTTGCTCTCTCGTGGTTTAACATCACGGAGCTTGTGAGTTCAATACT
TGTCGGCATTGTTATTTTTTGGGCCGCCCGCGCGGGGAAGCGCGAACTAG
CAGGGATCAACCGCGGGGTGACGTTGTATAGGATTAGGAAACTTGAATCT
ATCTGCGAGATGACGAAAGCTTAGGCGTGGATCGGGACAGGATGGTCTAT
CCTTGGCGATGGCAGGGGGGATAAGCACCGATGTAGTAGGTCCCATTGAC
ATAAAAGTGGTGGAACGGTTAGATAACGAAT
back to top

Coding sequence (CDS) from alignment at P-canaliculata_contig9979:6387..10767-

>mRNA_P-canaliculata_contig9979.24096.1 ID=mRNA_P-canaliculata_contig9979.24096.1|Name=mRNA_P-canaliculata_contig9979.24096.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=2346bp|location=Sequence derived from alignment at P-canaliculata_contig9979:6387..10767- (Pelvetia canaliculata dioecious)
ATGACGGACACGATCAAGGCCGACCTGGAAAGGTTGTACCCGACGGGCTG
CGGGGAGCACTTCCTCGCTCCTGCCAGGCAGCAGCTATTGCTGAGCGTGC
TGTCCCTCTGGGCGGACCTGCATACGGACACGGGGTATCGCCAGGGGATG
CACGAAATGACGGACACGATCAAGGCCGACCTGGAAAGGTTGTACCCGAC
GGGCTGCGGGGAGCACTTCCTCGCTCCTGCCAGGCAGCAGCTATTGCTGA
GCGTGCTGTCCCTCTGGGCGGACCTGCATACGGACACGGGGTATCGCCAG
GGGATGCACGAACTCTATGGAATGAAGTGGGCGCGGCTGATGTTCGGCCG
AGAATTCCGTGTGGAGGGGGTGCTGCAGCTGTGGGATCACATCTTCGCGT
CGTCCTTGCTCGAAGGCCGGCCAGACCTGCCGGAGTGCATTGAAGAGGTC
GCCGTCGCCATGCTCTATGGAATGAAGTGGGCGCGGCTGATGTTCGGCCG
AGAATTCCGTGTGGAGGGGGTGCTGCAGCTGTGGGATCACATCTTCGCGT
CGTCCTTGCTCGAAGGCCGGCCAGACCTGCCGGAGTGCATTGAAGAGGTC
GCCGTCGCCATGGTTCTGTCGGTGCGCGATGAGCTTCTCGCCGAGGATTC
GACGGGCTGCCTGCAGCTTCTCATGCGCTACCCGCCAGACCAGAGCGTGT
CCACCGTCATCGACCTCTCCATTGCTCTAGGACAACCTGGAGGCTACAGG
CACGCCCCGCCTTCGATGTATCTCGGCGGTCTCTCAGACACTGCGGAGGA
CGATCATCTCCGGGCGGGATCGTCAGAGTCCGGACCCGCGTGGTTAATGG
ACGGCGGTAAGACGGGCGGGGAATCAGGCAACGGTTTTTCTCGACGTATT
CCTAGGAGCAACTCGAACCACAGCCGGGAACAACAGCAGCGACTCAGGGC
TGAGGAGGAGTACGGGCGGGGTCTCGGCGGCGCGGGTTTCGGGAGAGAAG
GTGGCATAGAGGCGAGGGGAGGAGACATGAGGAACAACTGGCAGCAAGGG
CTGGACGAGTTCACCCGCAGGTTCTGTCGGTGCGCGATGAGCTTCTCGCC
GAGGATTCGACGGGCTGCCTGCAGCTTCTCATGCGCTACCCGCCAGACCA
GAGCGTGTCCACCGTCATCGACCTCTCCATTGCTCTAGGACAACCTGGAG
GCTACAGGCACGCCCCGCCTTCGATGTATCTCGGCGGTCTCTCAGACACT
GCGGAGGACGATCATCTCCGGGCGGGATCGTCAGAGTCCGGACCCGCGTG
GTTAATGGACGGCGGTAAGACGGGCGGGGAATCAGGCAACGGTTTTTCTC
GACGTATTCCTAGGAGCAACTCGAACCACAGCCGGGAACAACAGCAGCGA
CTCAGGGCTGAGGAGGAGTACGGGCGGGGTCTCGGCGGCGCGGGTTTCGG
GAGAGAAGGTGGCATAGAGGCGAGGGGAGGAGACATGAGGAACAACTGGC
AGCAAGGGCTGGACGAGTTCACCCGCAGGGCATTGTCCGCCGCCCAGGAC
GTTGCTAAGAGGGCGGTACAGACTGTGGAGCGTACTCAGCACGGGGGGGG
GTCGGCACCAGGGGCGCTGGCACGAAGGCTTCGGGAAGTGTGCGCCGCGA
TGGAGGGCATTGTCCGCCGCCCAGGACGTTGCTAAGAGGGCGGTACAGAC
TGTGGAGCGTACTCAGCACGGGGGGGGGTCGGCACCAGGGGCGCTGGCAC
GAAGGCTTCGGGAAGTGTGCGCCGCGATGGAGGCCGGGAAGACGTCGGTG
CACGCGGCCGCTGAGGACATCAGAGAGGTGGCGCGGTTACTCGAGGGGCG
GAAGGAGTTCAACTCGGGAAGGCGGTCGTCGGCCAGTGCGAGTGCGAGCG
GTCGCGGTAACGGTAGCAGTAGCGGTAACAGCAGTAGCGGTAACAGTAGC
AATCGCAGTCTCATGGGGGGCGGGGGCGGCGGCGGCAGGGGCGTGACGCG
AGGGTTCTCGACCTACTCAGAGGACGATGGTTGCGCGGACGGCCTTTACA
CTCGAGACTTGTGAGCCGGGAAGACGTCGGTGCACGCGGCCGCTGAGGAC
ATCAGAGAGGTGGCGCGGTTACTCGAGGGGCGGAAGGAGTTCAACTCGGG
AAGGCGGTCGTCGGCCAGTGCGAGTGCGAGCGGTCGCGGTAACGGTAGCA
GTAGCGGTAACAGCAGTAGCGGTAACAGTAGCAATCGCAGTCTCATGGGG
GGCGGGGGCGGCGGCGGCAGGGGCGTGACGCGAGGGTTCTCGACCTACTC
AGAGGACGATGGTTGCGCGGACGGCCTTTACACTCGAGACTTGTGA
back to top