mRNA_P-canaliculata_contig99738.24090.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig99738.24090.1
Unique NamemRNA_P-canaliculata_contig99738.24090.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig99738.24090.1 vs. uniprot
Match: UPI001F575AE5 (hypothetical protein n=1 Tax=Sphingomonas sp. JXJ CY 53 TaxID=2917992 RepID=UPI001F575AE5)

HSP 1 Score: 55.8 bits (133), Expect = 6.300e-7
Identity = 43/140 (30.71%), Postives = 63/140 (45.00%), Query Frame = 1 
Query:   25 AGSEVALSAIAPATLDTQTDWEALTWTPWEECTNIGEYGVTADEAIYTPVKSGEKVKISTIVDNGELTLEGPFDDTDPALAILQVATSARPIAPVYARVTNSLGNVRYMKGNPRSFKEKPNTAGDILMIMANVSVSGAIL 444
            AGS +A+SA APAT+D    + ALT+T   +C  IG  G T  +  + P+K G K K+    D G L      D+ D    + + A           RVT   G +RY +     + E  + A  I+M    V V   ++
Sbjct:    7 AGSAIAISAAAPATMDAA-GYAALTYTEGGQCEKIGTIGSTFTKTEFQPLK-GPKDKLKGSADYGALQPSFALDEEDVGQMLFRSAADDETNKLFSIRVTMQSGALRYFRSRVFGWPETVDGADPIVMATPTVEVCSKVV 144
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BLAST of mRNA_P-canaliculata_contig99738.24090.1 vs. uniprot
Match: UPI001F1A5675 (hypothetical protein n=1 Tax=Pseudohongiella sp. O18 TaxID=2904248 RepID=UPI001F1A5675)

HSP 1 Score: 50.8 bits (120), Expect = 4.790e-5
Identity = 43/146 (29.45%), Postives = 69/146 (47.26%), Query Frame = 1 
Query:    1 MPTNGVASAGSEVALSAIAPATLDTQTDWEALTWTPWEECTNIGEYGVTADEAIYTPVKSGEKVKISTIVDNGELTLEGPFDDT-DPALAILQVATSARPIAPVYARVTNSLGNVRYMKGNPRSFKEKPNTAGDILMIMANVSVSG 435
            M T+ + + G+E+A+SA APAT D+ T + ALT+T  +     GE G       + P  +G+  K     D G   L   +  T D  +AIL+ A +AR  + V  + T   G V Y + N    +     A   + +   +++SG
Sbjct:    1 MSTDFMPTVGTEIAVSAAAPATHDS-TGFAALTYTDIDVVGEFGETGANDSPVTFVPAGTGDTEKAQGATDYGNENLNMKYTTTADAGVAILRTAHAAR--SKVSVKKTLPDGAVIYYRANCMGVRTVTGGANTPIGLATTLAISG 143
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig99738.24090.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI001F575AE56.300e-730.71hypothetical protein n=1 Tax=Sphingomonas sp. JXJ ... [more]
UPI001F1A56754.790e-529.45hypothetical protein n=1 Tax=Pseudohongiella sp. O... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig99738contigP-canaliculata_contig99738:570..1025 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size456
Cds size456
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817356.7086737-CDS-P-canaliculata_contig99738:569..10251622817356.7086737-CDS-P-canaliculata_contig99738:569..1025Pelvetia canaliculata dioeciousCDSP-canaliculata_contig99738 570..1025 +
1693495244.4558027-CDS-P-canaliculata_contig99738:569..10251693495244.4558027-CDS-P-canaliculata_contig99738:569..1025Pelvetia canaliculata dioeciousCDSP-canaliculata_contig99738 570..1025 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig99738.24090.1prot_P-canaliculata_contig99738.24090.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig99738 570..1025 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig99738.24090.1

>prot_P-canaliculata_contig99738.24090.1 ID=prot_P-canaliculata_contig99738.24090.1|Name=mRNA_P-canaliculata_contig99738.24090.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=152bp
MPTNGVASAGSEVALSAIAPATLDTQTDWEALTWTPWEECTNIGEYGVTA
DEAIYTPVKSGEKVKISTIVDNGELTLEGPFDDTDPALAILQVATSARPI
APVYARVTNSLGNVRYMKGNPRSFKEKPNTAGDILMIMANVSVSGAILYA
V*
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mRNA from alignment at P-canaliculata_contig99738:570..1025+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig99738.24090.1 ID=mRNA_P-canaliculata_contig99738.24090.1|Name=mRNA_P-canaliculata_contig99738.24090.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=456bp|location=Sequence derived from alignment at P-canaliculata_contig99738:570..1025+ (Pelvetia canaliculata dioecious)
ATGCCTACTAACGGCGTAGCGAGTGCAGGTTCCGAGGTTGCGTTATCAGC
AATCGCACCAGCGACCCTTGACACACAGACAGACTGGGAAGCGTTGACGT
GGACCCCTTGGGAAGAATGTACCAATATTGGTGAGTACGGTGTAACTGCT
GATGAGGCGATTTACACACCGGTGAAATCTGGTGAGAAGGTAAAAATATC
AACCATCGTTGATAACGGCGAGCTGACCCTGGAAGGTCCGTTTGATGATA
CCGATCCAGCGCTTGCGATATTGCAAGTAGCTACCAGTGCGCGTCCCATT
GCACCTGTGTATGCGCGTGTGACCAACTCGCTTGGCAACGTTCGCTACAT
GAAAGGCAACCCCAGAAGTTTCAAAGAAAAGCCGAACACCGCTGGTGATA
TCTTGATGATTATGGCCAACGTTTCAGTATCAGGCGCAATCCTGTACGCA
GTCTAA
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Coding sequence (CDS) from alignment at P-canaliculata_contig99738:570..1025+

>mRNA_P-canaliculata_contig99738.24090.1 ID=mRNA_P-canaliculata_contig99738.24090.1|Name=mRNA_P-canaliculata_contig99738.24090.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=912bp|location=Sequence derived from alignment at P-canaliculata_contig99738:570..1025+ (Pelvetia canaliculata dioecious)
ATGCCTACTAACGGCGTAGCGAGTGCAGGTTCCGAGGTTGCGTTATCAGC
AATCGCACCAGCGACCCTTGACACACAGACAGACTGGGAAGCGTTGACGT
GGACCCCTTGGGAAGAATGTACCAATATTGGTGAGTACGGTGTAACTGCT
GATGAGGCGATTTACACACCGGTGAAATCTGGTGAGAAGGTAAAAATATC
AACCATCGTTGATAACGGCGAGCTGACCCTGGAAGGTCCGTTTGATGATA
CCGATCCAGCGCTTGCGATATTGCAAGTAGCTACCAGTGCGCGTCCCATT
GCACCTGTGTATGCGCGTGTGACCAACTCGCTTGGCAACGTTCGCTACAT
GAAAGGCAACCCCAGAAGTTTCAAAGAAAAGCCGAACACCGCTGGTGATA
TCTTGATGATTATGGCCAACGTTTCAGTATCAGGCGCAATCCTGTACGCA
GTCTAAATGCCTACTAACGGCGTAGCGAGTGCAGGTTCCGAGGTTGCGTT
ATCAGCAATCGCACCAGCGACCCTTGACACACAGACAGACTGGGAAGCGT
TGACGTGGACCCCTTGGGAAGAATGTACCAATATTGGTGAGTACGGTGTA
ACTGCTGATGAGGCGATTTACACACCGGTGAAATCTGGTGAGAAGGTAAA
AATATCAACCATCGTTGATAACGGCGAGCTGACCCTGGAAGGTCCGTTTG
ATGATACCGATCCAGCGCTTGCGATATTGCAAGTAGCTACCAGTGCGCGT
CCCATTGCACCTGTGTATGCGCGTGTGACCAACTCGCTTGGCAACGTTCG
CTACATGAAAGGCAACCCCAGAAGTTTCAAAGAAAAGCCGAACACCGCTG
GTGATATCTTGATGATTATGGCCAACGTTTCAGTATCAGGCGCAATCCTG
TACGCAGTCTAA
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