prot_P-canaliculata_contig99713.24088.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig99713.24088.1
Unique Nameprot_P-canaliculata_contig99713.24088.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length52
Homology
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BLAST of mRNA_P-canaliculata_contig99713.24088.1 vs. uniprot
Match: A0A5C6CCP2_9BACT (Transposase for transposon Tn5 n=1 Tax=Novipirellula galeiformis TaxID=2528004 RepID=A0A5C6CCP2_9BACT)

HSP 1 Score: 61.6 bits (148), Expect = 9.270e-10
Identity = 24/51 (47.06%), Postives = 33/51 (64.71%), Query Frame = 0 
Query:    2 RDRKSLSWGQLVEQVGPPPAETQWINVCNCNADYFAFYCRMIDQGHDWVVR 52
            R R+   WG++V+QVGPPP  +QWI+V +   D F  +C +   G DWVVR
Sbjct:  158 RTREGCYWGEVVDQVGPPPEGSQWIHVFDRGGDNFESFCHLAQSGCDWVVR 208
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BLAST of mRNA_P-canaliculata_contig99713.24088.1 vs. uniprot
Match: UPI0019A1523D (IS4 family transposase n=1 Tax=Pirellulaceae bacterium TaxID=2699754 RepID=UPI0019A1523D)

HSP 1 Score: 57.4 bits (137), Expect = 2.900e-8
Identity = 23/51 (45.10%), Postives = 33/51 (64.71%), Query Frame = 0 
Query:    2 RDRKSLSWGQLVEQVGPPPAETQWINVCNCNADYFAFYCRMIDQGHDWVVR 52
            R R+S  WGQ+++QVGPPP   ++ +V +   D F  YC ++ Q  DWVVR
Sbjct:  159 RPRESRLWGQVIDQVGPPPENVRFTHVFDRGGDNFEVYCHLLLQRTDWVVR 209
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig99713.24088.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A5C6CCP2_9BACT9.270e-1047.06Transposase for transposon Tn5 n=1 Tax=Novipirellu... [more]
UPI0019A1523D2.900e-845.10IS4 family transposase n=1 Tax=Pirellulaceae bacte... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig99713contigP-canaliculata_contig99713:8..163 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig99713.24088.1mRNA_P-canaliculata_contig99713.24088.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig99713 8..366 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig99713.24088.1 ID=prot_P-canaliculata_contig99713.24088.1|Name=mRNA_P-canaliculata_contig99713.24088.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=52bp
MRDRKSLSWGQLVEQVGPPPAETQWINVCNCNADYFAFYCRMIDQGHDWV
VR
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