mRNA_P-canaliculata_contig99713.24088.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig99713.24088.1
Unique NamemRNA_P-canaliculata_contig99713.24088.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig99713.24088.1 vs. uniprot
Match: A0A5C6CCP2_9BACT (Transposase for transposon Tn5 n=1 Tax=Novipirellula galeiformis TaxID=2528004 RepID=A0A5C6CCP2_9BACT)

HSP 1 Score: 67.8 bits (164), Expect = 8.120e-11
Identity = 27/61 (44.26%), Postives = 40/61 (65.57%), Query Frame = 3 
Query:  177 QERNTSQRLMRDRKSLSWGQLVEQVGPPPAETQWINVCNCNADYFAFYCRMIDQGHDWVVR 359
            ++ + +QRL R R+   WG++V+QVGPPP  +QWI+V +   D F  +C +   G DWVVR
Sbjct:  148 KKESRTQRLKRTREGCYWGEVVDQVGPPPEGSQWIHVFDRGGDNFESFCHLAQSGCDWVVR 208
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BLAST of mRNA_P-canaliculata_contig99713.24088.1 vs. uniprot
Match: UPI0019A1523D (IS4 family transposase n=1 Tax=Pirellulaceae bacterium TaxID=2699754 RepID=UPI0019A1523D)

HSP 1 Score: 61.2 bits (147), Expect = 1.600e-8
Identity = 25/54 (46.30%), Postives = 35/54 (64.81%), Query Frame = 3 
Query:  198 RLMRDRKSLSWGQLVEQVGPPPAETQWINVCNCNADYFAFYCRMIDQGHDWVVR 359
            RL R R+S  WGQ+++QVGPPP   ++ +V +   D F  YC ++ Q  DWVVR
Sbjct:  156 RLQRPRESRLWGQVIDQVGPPPENVRFTHVFDRGGDNFEVYCHLLLQRTDWVVR 209
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig99713.24088.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A5C6CCP2_9BACT8.120e-1144.26Transposase for transposon Tn5 n=1 Tax=Novipirellu... [more]
UPI0019A1523D1.600e-846.30IS4 family transposase n=1 Tax=Pirellulaceae bacte... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig99713contigP-canaliculata_contig99713:8..366 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score60.8
Seed ortholog evalue2.1e-07
Seed eggNOG ortholog886293.Sinac_0552
EggNOG free text desc.PFAM Transposase Tn5 dimerisation domain
EggNOG OGs2IZKA@203682,COG3385@1,COG3385@2
COG Functional cat.L
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size359
Cds size156
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817356.6297717-CDS-P-canaliculata_contig99713:7..1631622817356.6297717-CDS-P-canaliculata_contig99713:7..163Pelvetia canaliculata dioeciousCDSP-canaliculata_contig99713 8..163 -
1693495244.4197881-CDS-P-canaliculata_contig99713:7..1631693495244.4197881-CDS-P-canaliculata_contig99713:7..163Pelvetia canaliculata dioeciousCDSP-canaliculata_contig99713 8..163 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817356.6421409-UTR-P-canaliculata_contig99713:163..3661622817356.6421409-UTR-P-canaliculata_contig99713:163..366Pelvetia canaliculata dioeciousUTRP-canaliculata_contig99713 164..366 -
1693495244.432059-UTR-P-canaliculata_contig99713:163..3661693495244.432059-UTR-P-canaliculata_contig99713:163..366Pelvetia canaliculata dioeciousUTRP-canaliculata_contig99713 164..366 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig99713.24088.1prot_P-canaliculata_contig99713.24088.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig99713 8..163 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig99713.24088.1

>prot_P-canaliculata_contig99713.24088.1 ID=prot_P-canaliculata_contig99713.24088.1|Name=mRNA_P-canaliculata_contig99713.24088.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=52bp
MRDRKSLSWGQLVEQVGPPPAETQWINVCNCNADYFAFYCRMIDQGHDWV
VR
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mRNA from alignment at P-canaliculata_contig99713:8..366-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig99713.24088.1 ID=mRNA_P-canaliculata_contig99713.24088.1|Name=mRNA_P-canaliculata_contig99713.24088.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=359bp|location=Sequence derived from alignment at P-canaliculata_contig99713:8..366- (Pelvetia canaliculata dioecious)
TTGCTGCTGAACGATCTTGGCGAACTTAATTCCGGCTATAATTCGAAAGT
CAAAGGGCTCAGTCCGGTCGGCAATTGCTCTTGTGGTTTTTTGATGCAAA
ACTCATTGGCCGTTACACCGGAGGGGGATGTGATTGGGCTGGCTGGTCAG
AAGCTTCGCCACCGGAAACTTAAGCCCAAGAACGAAACACGTCCCAACGC
CTCATGCGTGATCGCAAATCGCTTTCGTGGGGCCAGTTGGTTGAACAAGT
CGGGCCGCCTCCTGCGGAAACTCAGTGGATCAACGTCTGCAATTGTAACG
CCGATTACTTCGCGTTCTATTGTCGGATGATTGACCAGGGCCATGACTGG
GTGGTTCGG
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Coding sequence (CDS) from alignment at P-canaliculata_contig99713:8..366-

>mRNA_P-canaliculata_contig99713.24088.1 ID=mRNA_P-canaliculata_contig99713.24088.1|Name=mRNA_P-canaliculata_contig99713.24088.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=312bp|location=Sequence derived from alignment at P-canaliculata_contig99713:8..366- (Pelvetia canaliculata dioecious)
ATGCGTGATCGCAAATCGCTTTCGTGGGGCCAGTTGGTTGAACAAGTCGG
GCCGCCTCCTGCGGAAACTCAGTGGATCAACGTCTGCAATTGTAACGCCG
ATTACTTCGCGTTCTATTGTCGGATGATTGACCAGGGCCATGACTGGGTG
GTTCGGATGCGTGATCGCAAATCGCTTTCGTGGGGCCAGTTGGTTGAACA
AGTCGGGCCGCCTCCTGCGGAAACTCAGTGGATCAACGTCTGCAATTGTA
ACGCCGATTACTTCGCGTTCTATTGTCGGATGATTGACCAGGGCCATGAC
TGGGTGGTTCGG
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