mRNA_P-canaliculata_contig9971.24087.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig9971.24087.1
Unique NamemRNA_P-canaliculata_contig9971.24087.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9971.24087.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig9971contigP-canaliculata_contig9971:10823..11832 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size266
Cds size243
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig9971.24087.1prot_P-canaliculata_contig9971.24087.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig9971 10823..11809 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817356.3174691-CDS-P-canaliculata_contig9971:10822..109411622817356.3174691-CDS-P-canaliculata_contig9971:10822..10941Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9971 10823..10941 -
1693495244.1545913-CDS-P-canaliculata_contig9971:10822..109411693495244.1545913-CDS-P-canaliculata_contig9971:10822..10941Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9971 10823..10941 -
1622817356.328751-CDS-P-canaliculata_contig9971:11685..118091622817356.328751-CDS-P-canaliculata_contig9971:11685..11809Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9971 11686..11809 -
1693495244.168738-CDS-P-canaliculata_contig9971:11685..118091693495244.168738-CDS-P-canaliculata_contig9971:11685..11809Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9971 11686..11809 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817356.339944-UTR-P-canaliculata_contig9971:11809..118321622817356.339944-UTR-P-canaliculata_contig9971:11809..11832Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9971 11810..11832 -
1693495244.1796343-UTR-P-canaliculata_contig9971:11809..118321693495244.1796343-UTR-P-canaliculata_contig9971:11809..11832Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9971 11810..11832 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig9971.24087.1

>prot_P-canaliculata_contig9971.24087.1 ID=prot_P-canaliculata_contig9971.24087.1|Name=mRNA_P-canaliculata_contig9971.24087.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=81bp
MMAHYSAAAVAVLFVTTSELVSQSLASKKGDTAQRLLATLSGRDLPDQVL
GFSGITTSDAADAFPPRFERNIIKALEADDQ
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mRNA from alignment at P-canaliculata_contig9971:10823..11832-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig9971.24087.1 ID=mRNA_P-canaliculata_contig9971.24087.1|Name=mRNA_P-canaliculata_contig9971.24087.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=1010bp|location=Sequence derived from alignment at P-canaliculata_contig9971:10823..11832- (Pelvetia canaliculata dioecious)
AGTCCGAGGGAAAAAGAGGAAGCATGATGGCCCACTACTCTGCTGCTGCT
GTGGCTGTACTTTTTGTGACTACCTCGGAGCTGGTCAGCCAATCGCTCGC
GTCGAAAAAGGGTGACACGGCCCAACGCTTGCTAGCCACTTTATCAGGTA
TGAATAAATGGCTCTACCGAATCCTGGCCTCGTCGCTCAAAAAAAACTGA
GCGGGTGATAATCTGACGGTTCGTGGAGTATGAGAGCTTCATGGTTTGGA
GGGGAGGGATCAATACTACAATAAAGAGTGTTTGGCATCTGTTTCAATAA
CTGTTCAGCCTTAAAATGTCTCTTCCAGACTTGAGTATGCGTGGCGTGCA
TAGCACAAAGTCTGATGGTTCTTATGAAGCATGGCTTGGTATCCGTATGT
TATCATGAACGGGATCAAGAGGAAATACGCCTCCCATGTTTGTGTTAGTC
GGAAATAAGTAGATACGCGCTCCATCTCAAGGCCCAATGAGTCGTTCAAC
GAATAGGGGGGGGGGGATATTGGAATCGTTTGCCCGTCTTGGGAGAGGGG
GGCACGAAAATATCCCCTCACAGCGACATGTTTTACAACCCTCTTGTGAA
ATAAGTTCGATTCGGACCAAGCTTGCCGACCATGTCGAGAATCATGTAGT
CCTGTCCCCTCGAGGGGCTGTTCTGGTGGCATCCTCGGGGAGGGAATCGT
CGAATCCCCGCCTCCTCCCAATCATTGAACGACATCATGGTTCAGTACGT
CGACATTTCCTACGCCTGGTGCCTTCGCCCATTACATCTCCAATGAAGGC
AGTACATTCTCGATATTTTGTCAATAGCTTTCTATAAAAAACCGCCCCTT
GTATCTTTTGTTGTCTTGTGGTTTGTTCATATCACGAGAAGGTCGCGACC
TACCAGACCAAGTTCTTGGGTTCTCGGGCATCACCACGAGCGACGCCGCG
GACGCGTTCCCACCTAGGTTTGAAAGGAATATCATCAAAGCTTTGGAGGC
GGACGATCAA
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Coding sequence (CDS) from alignment at P-canaliculata_contig9971:10823..11832-

>mRNA_P-canaliculata_contig9971.24087.1 ID=mRNA_P-canaliculata_contig9971.24087.1|Name=mRNA_P-canaliculata_contig9971.24087.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at P-canaliculata_contig9971:10823..11832- (Pelvetia canaliculata dioecious)
ATGATGGCCCACTACTCTGCTGCTGCTGTGGCTGTACTTTTTGTGACTAC
CTCGGAGCTGGTCAGCCAATCGCTCGCGTCGAAAAAGGGTGACACGGCCC
AACGCTTGCTAGCCACTTTATCAGATGATGGCCCACTACTCTGCTGCTGC
TGTGGCTGTACTTTTTGTGACTACCTCGGAGCTGGTCAGCCAATCGCTCG
CGTCGAAAAAGGGTGACACGGCCCAACGCTTGCTAGCCACTTTATCAGGT
CGCGACCTACCAGACCAAGTTCTTGGGTTCTCGGGCATCACCACGAGCGA
CGCCGCGGACGCGTTCCCACCTAGGTTTGAAAGGAATATCATCAAAGCTT
TGGAGGCGGACGATCAAGTCGCGACCTACCAGACCAAGTTCTTGGGTTCT
CGGGCATCACCACGAGCGACGCCGCGGACGCGTTCCCACCTAGGTTTGAA
AGGAATATCATCAAAGCTTTGGAGGCGGACGATCAA
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