mRNA_P-canaliculata_contig99663.24082.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig99663.24082.1
Unique NamemRNA_P-canaliculata_contig99663.24082.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig99663.24082.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig99663contigP-canaliculata_contig99663:432..848 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score93.6
Seed ortholog evalue7.8e-17
Seed eggNOG ortholog999611.KI421504_gene2768
EggNOG OGs1R9WP@1224,281NA@191028,28P0W@1,2U5XJ@28211,2ZBXD@2
Best tax levelLeisingera
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size417
Cds size417
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817356.154302-CDS-P-canaliculata_contig99663:431..8481622817356.154302-CDS-P-canaliculata_contig99663:431..848Pelvetia canaliculata dioeciousCDSP-canaliculata_contig99663 432..848 -
1693495244.0885525-CDS-P-canaliculata_contig99663:431..8481693495244.0885525-CDS-P-canaliculata_contig99663:431..848Pelvetia canaliculata dioeciousCDSP-canaliculata_contig99663 432..848 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig99663.24082.1prot_P-canaliculata_contig99663.24082.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig99663 432..848 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig99663.24082.1

>prot_P-canaliculata_contig99663.24082.1 ID=prot_P-canaliculata_contig99663.24082.1|Name=mRNA_P-canaliculata_contig99663.24082.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=139bp
AADFDVSGLIESKNNHNVQAISDDYVILLASMEETLIPKDSKSPWQGATG
PCGGAVEIKQGKIKGDGFCSFTDNENDKFVISWTAQSMNEQGGPIGVWEL
TAGTGKYANASASGEYNDVPSEDSTRSSITIIGQLTIP*
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mRNA from alignment at P-canaliculata_contig99663:432..848-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig99663.24082.1 ID=mRNA_P-canaliculata_contig99663.24082.1|Name=mRNA_P-canaliculata_contig99663.24082.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=417bp|location=Sequence derived from alignment at P-canaliculata_contig99663:432..848- (Pelvetia canaliculata dioecious)
GCAGCGGATTTTGACGTATCTGGCTTAATTGAAAGCAAAAATAATCATAA
CGTTCAAGCGATCTCCGATGATTATGTTATTTTGCTTGCCTCAATGGAGG
AAACACTGATACCGAAAGACAGTAAGAGTCCGTGGCAAGGTGCTACCGGA
CCTTGCGGTGGTGCTGTTGAAATCAAGCAAGGAAAAATAAAGGGTGATGG
TTTCTGCTCATTCACAGACAATGAAAATGACAAGTTTGTAATCTCTTGGA
CTGCTCAGTCAATGAACGAACAAGGTGGTCCAATTGGAGTGTGGGAGCTA
ACTGCCGGCACTGGCAAATATGCTAATGCATCAGCCAGTGGGGAGTACAA
TGACGTCCCGAGTGAGGACTCCACACGGAGTTCTATCACAATTATTGGCC
AGCTAACAATTCCATAG
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Coding sequence (CDS) from alignment at P-canaliculata_contig99663:432..848-

>mRNA_P-canaliculata_contig99663.24082.1 ID=mRNA_P-canaliculata_contig99663.24082.1|Name=mRNA_P-canaliculata_contig99663.24082.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=834bp|location=Sequence derived from alignment at P-canaliculata_contig99663:432..848- (Pelvetia canaliculata dioecious)
GCAGCGGATTTTGACGTATCTGGCTTAATTGAAAGCAAAAATAATCATAA
CGTTCAAGCGATCTCCGATGATTATGTTATTTTGCTTGCCTCAATGGAGG
AAACACTGATACCGAAAGACAGTAAGAGTCCGTGGCAAGGTGCTACCGGA
CCTTGCGGTGGTGCTGTTGAAATCAAGCAAGGAAAAATAAAGGGTGATGG
TTTCTGCTCATTCACAGACAATGAAAATGACAAGTTTGTAATCTCTTGGA
CTGCTCAGTCAATGAACGAACAAGGTGGTCCAATTGGAGTGTGGGAGCTA
ACTGCCGGCACTGGCAAATATGCTAATGCATCAGCCAGTGGGGAGTACAA
TGACGTCCCGAGTGAGGACTCCACACGGAGTTCTATCACAATTATTGGCC
AGCTAACAATTCCATAGGCAGCGGATTTTGACGTATCTGGCTTAATTGAA
AGCAAAAATAATCATAACGTTCAAGCGATCTCCGATGATTATGTTATTTT
GCTTGCCTCAATGGAGGAAACACTGATACCGAAAGACAGTAAGAGTCCGT
GGCAAGGTGCTACCGGACCTTGCGGTGGTGCTGTTGAAATCAAGCAAGGA
AAAATAAAGGGTGATGGTTTCTGCTCATTCACAGACAATGAAAATGACAA
GTTTGTAATCTCTTGGACTGCTCAGTCAATGAACGAACAAGGTGGTCCAA
TTGGAGTGTGGGAGCTAACTGCCGGCACTGGCAAATATGCTAATGCATCA
GCCAGTGGGGAGTACAATGACGTCCCGAGTGAGGACTCCACACGGAGTTC
TATCACAATTATTGGCCAGCTAACAATTCCATAG
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