mRNA_P-canaliculata_contig9965.24079.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig9965.24079.1
Unique NamemRNA_P-canaliculata_contig9965.24079.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
[Close]
BLAST of mRNA_P-canaliculata_contig9965.24079.1 vs. uniprot
Match: D7G7J9_ECTSI (Apt1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J9_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 1.830e-33
Identity = 60/72 (83.33%), Postives = 67/72 (93.06%), Query Frame = 1 
Query:    1 KVNIFLTYTGDRYLELEDVDNVHLKLHPLVYTNKKWTPRKLMLRIRRDACLDVLSQVSRNFSNLGSFLNTRL 216
            +VN+FLTY GDRYLELEDVDNVHLKLHPLVYTNK WTPRKL+ R+RRD  LDVLSQVSRNF+NLG+FLNTR+
Sbjct:  729 EVNVFLTYMGDRYLELEDVDNVHLKLHPLVYTNKTWTPRKLLFRMRRDVILDVLSQVSRNFNNLGNFLNTRV 800
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BLAST of mRNA_P-canaliculata_contig9965.24079.1 vs. uniprot
Match: A0A6H5KUC4_9PHAE (Apt1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUC4_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 3.430e-33
Identity = 59/72 (81.94%), Postives = 67/72 (93.06%), Query Frame = 1 
Query:    1 KVNIFLTYTGDRYLELEDVDNVHLKLHPLVYTNKKWTPRKLMLRIRRDACLDVLSQVSRNFSNLGSFLNTRL 216
            +VN+FLTY GDRYLELEDVDNVHLK+HPLVYTNK WTPRKL+ R+RRD  LDVLSQVSRNF+NLG+FLNTR+
Sbjct: 1217 EVNVFLTYMGDRYLELEDVDNVHLKIHPLVYTNKTWTPRKLLFRMRRDVILDVLSQVSRNFNNLGNFLNTRV 1288
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BLAST of mRNA_P-canaliculata_contig9965.24079.1 vs. uniprot
Match: I2CQJ8_NANGC (Apt1 domain-containing protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQJ8_NANGC)

HSP 1 Score: 79.3 bits (194), Expect = 7.060e-18
Identity = 35/72 (48.61%), Postives = 57/72 (79.17%), Query Frame = 1 
Query:    1 KVNIFLTYTGDRYLELEDVDNVHLKLHPLVYTNKKWTPRKLMLRIRRDACLDVLSQVSRNFSNLGSFLNTRL 216
            ++NIF +Y+G +   LED++++HLK+HP++YTNK  + R+L+ R+R+D  LD+L QV+RNF+NLG++L   L
Sbjct:    2 EINIFFSYSG-KGGNLEDLEHLHLKVHPIIYTNKTLSARELLARLRKDVVLDLLKQVNRNFANLGAWLRVSL 72
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BLAST of mRNA_P-canaliculata_contig9965.24079.1 vs. uniprot
Match: A0A485LBR3_9STRA (Aste57867_19007 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LBR3_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 1.100e-11
Identity = 37/75 (49.33%), Postives = 47/75 (62.67%), Query Frame = 1 
Query:    4 VNIFLTYTGDRYL----ELEDVDNVHLKLHPLVYTNKKWTPRKLMLRIRRDACLDVLSQVSRNFSNLGSFLNTRL 216
            V + LTY   +       LE++    LKLH LVYT+K  T   L+LR+RRD  LD+LSQV RNF+N+G FL  RL
Sbjct: 2109 VLVLLTYKSGKSAVTPQHLEEMRGFELKLHSLVYTDKTCTVSDLLLRVRRDILLDILSQVGRNFNNIGVFLKERL 2183
[Close]
BLAST of mRNA_P-canaliculata_contig9965.24079.1 vs. uniprot
Match: A0A3L6VCD5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VCD5_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 1.490e-11
Identity = 37/74 (50.00%), Postives = 47/74 (63.51%), Query Frame = 1 
Query:   10 IFLTYTGDRYL-----ELEDVDNVHLKLHPLVYTNKKWTPRKLMLRIRRDACLDVLSQVSRNFSNLGSFLNTRL 216
            + LTY   +        LE++    LKLH LVYT+K  T  +L+LR+RRD  LDVLSQV RNF+N+G FL  RL
Sbjct: 1692 VLLTYKSGKATPTTPQHLEEMRGFELKLHSLVYTDKTCTLSELVLRVRRDILLDVLSQVGRNFNNIGIFLKERL 1765
[Close]
BLAST of mRNA_P-canaliculata_contig9965.24079.1 vs. uniprot
Match: A0A3R6W6P9_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6W6P9_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 1.700e-11
Identity = 34/57 (59.65%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:   46 LEDVDNVHLKLHPLVYTNKKWTPRKLMLRIRRDACLDVLSQVSRNFSNLGSFLNTRL 216
            LE++    LKLH LVYT+K  T  +L+LR+RRD  LDVLSQV RNF+N+G FL  RL
Sbjct:  224 LEEMRGFELKLHSLVYTDKTCTLSELVLRVRRDILLDVLSQVGRNFNNIGIFLKERL 280
[Close]
BLAST of mRNA_P-canaliculata_contig9965.24079.1 vs. uniprot
Match: A0A3L6VUH8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VUH8_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 2.010e-11
Identity = 34/57 (59.65%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:   46 LEDVDNVHLKLHPLVYTNKKWTPRKLMLRIRRDACLDVLSQVSRNFSNLGSFLNTRL 216
            LE++    LKLH LVYT+K  T  +L+LR+RRD  LDVLSQV RNF+N+G FL  RL
Sbjct:  706 LEEMRGFELKLHSLVYTDKTCTLSELVLRVRRDILLDVLSQVGRNFNNIGIFLKERL 762
[Close]
BLAST of mRNA_P-canaliculata_contig9965.24079.1 vs. uniprot
Match: A0A3R7Y0C2_9STRA (Apt1 domain-containing protein n=10 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7Y0C2_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 2.050e-11
Identity = 34/57 (59.65%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:   46 LEDVDNVHLKLHPLVYTNKKWTPRKLMLRIRRDACLDVLSQVSRNFSNLGSFLNTRL 216
            LE++    LKLH LVYT+K  T  +L+LR+RRD  LDVLSQV RNF+N+G FL  RL
Sbjct: 1992 LEEMRGFELKLHSLVYTDKTCTLSELVLRVRRDILLDVLSQVGRNFNNIGIFLKERL 2048
[Close]
BLAST of mRNA_P-canaliculata_contig9965.24079.1 vs. uniprot
Match: A0A024TSZ0_9STRA (Apt1 domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TSZ0_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 2.800e-11
Identity = 34/57 (59.65%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:   46 LEDVDNVHLKLHPLVYTNKKWTPRKLMLRIRRDACLDVLSQVSRNFSNLGSFLNTRL 216
            LE++    LKLH LVYT+K  T   L+LR+RRD  LDVLSQV RNF+N+G FL  RL
Sbjct: 2228 LEEMRGFELKLHSLVYTDKTCTVSDLVLRVRRDILLDVLSQVGRNFNNIGVFLKERL 2284
[Close]
BLAST of mRNA_P-canaliculata_contig9965.24079.1 vs. uniprot
Match: A0A6G0XTM8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XTM8_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 7.140e-11
Identity = 35/75 (46.67%), Postives = 47/75 (62.67%), Query Frame = 1 
Query:    4 VNIFLTYTGDRYL----ELEDVDNVHLKLHPLVYTNKKWTPRKLMLRIRRDACLDVLSQVSRNFSNLGSFLNTRL 216
            V + LTY   +       LE++    LK+H LVYT+K  +   L+LR+RRD  LD+LSQV RNF+N+G FL  RL
Sbjct: 2080 VLVLLTYKSGKTAVTPQHLEEMRGFELKIHSLVYTDKTCSIEDLLLRVRRDIILDILSQVGRNFNNIGVFLKERL 2154
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9965.24079.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7J9_ECTSI1.830e-3383.33Apt1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KUC4_9PHAE3.430e-3381.94Apt1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
I2CQJ8_NANGC7.060e-1848.61Apt1 domain-containing protein (Fragment) n=1 Tax=... [more]
A0A485LBR3_9STRA1.100e-1149.33Aste57867_19007 protein n=1 Tax=Aphanomyces stella... [more]
A0A3L6VCD5_9STRA1.490e-1150.00Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A3R6W6P9_9STRA1.700e-1159.65Uncharacterized protein (Fragment) n=2 Tax=Aphanom... [more]
A0A3L6VUH8_9STRA2.010e-1159.65Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A3R7Y0C2_9STRA2.050e-1159.65Apt1 domain-containing protein n=10 Tax=Aphanomyce... [more]
A0A024TSZ0_9STRA2.800e-1159.65Apt1 domain-containing protein n=2 Tax=Aphanomyces... [more]
A0A6G0XTM8_9STRA7.140e-1146.67Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig9965contigP-canaliculata_contig9965:10707..11162 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.3
Seed ortholog evalue8.2e-10
Seed eggNOG ortholog42099.EPrPV00000013285
KEGG koko:K22020
GOsGO:0000003,GO:0000902,GO:0000904,GO:0001558,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0006950,GO:0007154,GO:0007275,GO:0008150,GO:0009267,GO:0009605,GO:0009653,GO:0009826,GO:0009856,GO:0009860,GO:0009888,GO:0009932,GO:0009966,GO:0009968,GO:0009987,GO:0009991,GO:0010015,GO:0010053,GO:0010054,GO:0010104,GO:0010105,GO:0010646,GO:0010648,GO:0012505,GO:0016036,GO:0016043,GO:0016049,GO:0021700,GO:0022414,GO:0022622,GO:0023051,GO:0023057,GO:0030154,GO:0030307,GO:0030427,GO:0031667,GO:0031668,GO:0031669,GO:0032501,GO:0032502,GO:0032989,GO:0033554,GO:0035618,GO:0035619,GO:0035838,GO:0040007,GO:0040008,GO:0042594,GO:0042995,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044463,GO:0044464,GO:0044706,GO:0045927,GO:0048364,GO:0048468,GO:0048469,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048588,GO:0048589,GO:0048731,GO:0048764,GO:0048765,GO:0048767,GO:0048768,GO:0048856,GO:0048868,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051286,GO:0051704,GO:0051716,GO:0060560,GO:0065007,GO:0070297,GO:0070298,GO:0071496,GO:0071695,GO:0071840,GO:0080147,GO:0090404,GO:0090406,GO:0090558,GO:0090627,GO:0099402,GO:0120025,GO:0120038,GO:1902531,GO:1902532,GO:1905392
EggNOG free text desc.Source PGD
EggNOG OGs1MFUR@121069,KOG1910@1,KOG1910@2759
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size216
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817355.952904-CDS-P-canaliculata_contig9965:10706..107541622817355.952904-CDS-P-canaliculata_contig9965:10706..10754Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9965 10707..10754 -
1693495243.948285-CDS-P-canaliculata_contig9965:10706..107541693495243.948285-CDS-P-canaliculata_contig9965:10706..10754Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9965 10707..10754 -
1622817355.9686692-CDS-P-canaliculata_contig9965:10994..111621622817355.9686692-CDS-P-canaliculata_contig9965:10994..11162Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9965 10995..11162 -
1693495243.96181-CDS-P-canaliculata_contig9965:10994..111621693495243.96181-CDS-P-canaliculata_contig9965:10994..11162Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9965 10995..11162 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig9965.24079.1prot_P-canaliculata_contig9965.24079.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig9965 10707..11162 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig9965.24079.1

>prot_P-canaliculata_contig9965.24079.1 ID=prot_P-canaliculata_contig9965.24079.1|Name=mRNA_P-canaliculata_contig9965.24079.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=72bp
KVNIFLTYTGDRYLELEDVDNVHLKLHPLVYTNKKWTPRKLMLRIRRDAC
LDVLSQVSRNFSNLGSFLNTRL
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mRNA from alignment at P-canaliculata_contig9965:10707..11162-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig9965.24079.1 ID=mRNA_P-canaliculata_contig9965.24079.1|Name=mRNA_P-canaliculata_contig9965.24079.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=456bp|location=Sequence derived from alignment at P-canaliculata_contig9965:10707..11162- (Pelvetia canaliculata dioecious)
AAGGTCAACATTTTCCTCACGTATACGGGTGACCGCTATCTGGAGCTGGA
AGACGTGGACAACGTGCATCTGAAGCTCCACCCCCTGGTCTATACCAACA
AAAAATGGACGCCTCGCAAGCTGATGCTACGGATTCGAAGGGATGCATGT
CTCGACGTTCTCTCTCAGGTTGCTTGTCTTTGAGGTTGCTGGATCTGTAC
CATACATGAAATTCGCGCGTTTTCCGTAGGCGAAGGGGTGATCGTTCTGA
TCGCGGCAGGCACTATTGATTCACCTAAGCCGTGTTCCGAGTCGCCTTTC
CTCGAAACCGTACAGCGATGAGAACTACCGCGTCCATTCCACGACCCCCC
CCCGCAGGCAGGTGTGCTCGTAGATATCTATTGATCCGTTCGGATGCCCG
TGTGACAGGTGAGCCGCAACTTCAGCAACCTGGGAAGCTTTCTCAACACG
CGACTC
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Coding sequence (CDS) from alignment at P-canaliculata_contig9965:10707..11162-

>mRNA_P-canaliculata_contig9965.24079.1 ID=mRNA_P-canaliculata_contig9965.24079.1|Name=mRNA_P-canaliculata_contig9965.24079.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=432bp|location=Sequence derived from alignment at P-canaliculata_contig9965:10707..11162- (Pelvetia canaliculata dioecious)
AAGGTCAACATTTTCCTCACGTATACGGGTGACCGCTATCTGGAGCTGGA
AGACGTGGACAACGTGCATCTGAAGCTCCACCCCCTGGTCTATACCAACA
AAAAATGGACGCCTCGCAAGCTGATGCTACGGATTCGAAGGGATGCATGT
CTCGACGTTCTCTCTCAGAAGGTCAACATTTTCCTCACGTATACGGGTGA
CCGCTATCTGGAGCTGGAAGACGTGGACAACGTGCATCTGAAGCTCCACC
CCCTGGTCTATACCAACAAAAAATGGACGCCTCGCAAGCTGATGCTACGG
ATTCGAAGGGATGCATGTCTCGACGTTCTCTCTCAGGTGAGCCGCAACTT
CAGCAACCTGGGAAGCTTTCTCAACACGCGACTCGTGAGCCGCAACTTCA
GCAACCTGGGAAGCTTTCTCAACACGCGACTC
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