mRNA_P-canaliculata_contig99627.24076.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig99627.24076.1
Unique NamemRNA_P-canaliculata_contig99627.24076.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig99627.24076.1 vs. uniprot
Match: UPI0013EA2E4C (hypothetical protein n=1 Tax=unclassified Paludisphaera TaxID=2624067 RepID=UPI0013EA2E4C)

HSP 1 Score: 78.2 bits (191), Expect = 3.310e-16
Identity = 36/88 (40.91%), Postives = 55/88 (62.50%), Query Frame = 1 
Query:   31 IKLKIHVVFYKDSLGDWIAHCLEMDLCGHGASQVSAVKMLNDAIAMQIEFSLAGDNPENIFSPADAKFFQMFAEGDDKLVGNLEVTIE 294
            ++L + +VFY++    W+AHCLE DL G G ++  A+  L DA  +Q E S   DNP N FSPA+ ++F+M+A G D     ++V+ E
Sbjct:    7 LRLSLRIVFYRED-ESWVAHCLETDLVGVGETKREAMATLWDATTLQFEASREWDNPANFFSPAEGRYFEMYARGRDVATAEMDVSAE 93
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig99627.24076.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI0013EA2E4C3.310e-1640.91hypothetical protein n=1 Tax=unclassified Paludisp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig99627contigP-canaliculata_contig99627:492..860 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size369
Cds size348
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817355.541757-CDS-P-canaliculata_contig99627:491..8391622817355.541757-CDS-P-canaliculata_contig99627:491..839Pelvetia canaliculata dioeciousCDSP-canaliculata_contig99627 492..839 -
1693495243.6007557-CDS-P-canaliculata_contig99627:491..8391693495243.6007557-CDS-P-canaliculata_contig99627:491..839Pelvetia canaliculata dioeciousCDSP-canaliculata_contig99627 492..839 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817355.5571184-UTR-P-canaliculata_contig99627:839..8601622817355.5571184-UTR-P-canaliculata_contig99627:839..860Pelvetia canaliculata dioeciousUTRP-canaliculata_contig99627 840..860 -
1693495243.61382-UTR-P-canaliculata_contig99627:839..8601693495243.61382-UTR-P-canaliculata_contig99627:839..860Pelvetia canaliculata dioeciousUTRP-canaliculata_contig99627 840..860 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig99627.24076.1prot_P-canaliculata_contig99627.24076.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig99627 492..839 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig99627.24076.1

>prot_P-canaliculata_contig99627.24076.1 ID=prot_P-canaliculata_contig99627.24076.1|Name=mRNA_P-canaliculata_contig99627.24076.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=116bp
MPEIKLKIHVVFYKDSLGDWIAHCLEMDLCGHGASQVSAVKMLNDAIAMQ
IEFSLAGDNPENIFSPADAKFFQMFAEGDDKLVGNLEVTIEEEYDSFKFQ
GSESRQYSGGTTLAF*
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mRNA from alignment at P-canaliculata_contig99627:492..860-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig99627.24076.1 ID=mRNA_P-canaliculata_contig99627.24076.1|Name=mRNA_P-canaliculata_contig99627.24076.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=369bp|location=Sequence derived from alignment at P-canaliculata_contig99627:492..860- (Pelvetia canaliculata dioecious)
AAACATATTATTTCCAAAATTATGCCCGAAATAAAGTTAAAAATCCACGT
TGTCTTTTACAAAGATTCACTTGGCGATTGGATTGCACACTGCTTGGAAA
TGGACCTTTGCGGTCACGGTGCCTCACAGGTTTCTGCGGTTAAAATGCTA
AACGATGCGATTGCAATGCAGATAGAGTTTTCTCTTGCGGGCGACAATCC
TGAGAATATTTTCTCACCAGCCGATGCAAAATTCTTTCAGATGTTTGCCG
AAGGCGATGATAAACTTGTCGGCAATCTTGAAGTGACTATCGAAGAAGAA
TATGATTCTTTTAAGTTTCAGGGGTCTGAGTCTAGGCAGTATTCCGGCGG
AACAACACTGGCTTTTTAA
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Coding sequence (CDS) from alignment at P-canaliculata_contig99627:492..860-

>mRNA_P-canaliculata_contig99627.24076.1 ID=mRNA_P-canaliculata_contig99627.24076.1|Name=mRNA_P-canaliculata_contig99627.24076.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=696bp|location=Sequence derived from alignment at P-canaliculata_contig99627:492..860- (Pelvetia canaliculata dioecious)
ATGCCCGAAATAAAGTTAAAAATCCACGTTGTCTTTTACAAAGATTCACT
TGGCGATTGGATTGCACACTGCTTGGAAATGGACCTTTGCGGTCACGGTG
CCTCACAGGTTTCTGCGGTTAAAATGCTAAACGATGCGATTGCAATGCAG
ATAGAGTTTTCTCTTGCGGGCGACAATCCTGAGAATATTTTCTCACCAGC
CGATGCAAAATTCTTTCAGATGTTTGCCGAAGGCGATGATAAACTTGTCG
GCAATCTTGAAGTGACTATCGAAGAAGAATATGATTCTTTTAAGTTTCAG
GGGTCTGAGTCTAGGCAGTATTCCGGCGGAACAACACTGGCTTTTTAAAT
GCCCGAAATAAAGTTAAAAATCCACGTTGTCTTTTACAAAGATTCACTTG
GCGATTGGATTGCACACTGCTTGGAAATGGACCTTTGCGGTCACGGTGCC
TCACAGGTTTCTGCGGTTAAAATGCTAAACGATGCGATTGCAATGCAGAT
AGAGTTTTCTCTTGCGGGCGACAATCCTGAGAATATTTTCTCACCAGCCG
ATGCAAAATTCTTTCAGATGTTTGCCGAAGGCGATGATAAACTTGTCGGC
AATCTTGAAGTGACTATCGAAGAAGAATATGATTCTTTTAAGTTTCAGGG
GTCTGAGTCTAGGCAGTATTCCGGCGGAACAACACTGGCTTTTTAA
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