prot_P-canaliculata_contig99476.24057.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig99476.24057.1
Unique Nameprot_P-canaliculata_contig99476.24057.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length327
Homology
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BLAST of mRNA_P-canaliculata_contig99476.24057.1 vs. uniprot
Match: UPI001BC1F85E (Glycosyltransferase family 4 protein n=1 Tax=Melioribacter sp. TaxID=2052167 RepID=UPI001BC1F85E)

HSP 1 Score: 58.2 bits (139), Expect = 7.450e-6
Identity = 61/300 (20.33%), Postives = 129/300 (43.00%), Query Frame = 0 
Query:   12 LAKTFEAKERVALNYIQAIINNGGNVIVYCAANSPLDKAVEKLGIKRLHYKARRVKSFFDLDKVFKISEILKTQQIDLVHSFDEVFIWWLAFLLR-NKPMVPLVHSIFKSSLINYNKFWHKFIINRIDHIMIPSEELATSLLNKFPVKERTFKL--NAFGIPNYTNIIKPADSIKTRLAWSEDDWVLGLTLEHMQIKKKTLDSILNFIESFKDIDPKQIGDRRNVKLLIL-LPALEQDN--KKIKSFIEQIKAQRMGNFIYVHFLDDWLNEQTHLDLWIVLNSRYFMVDHLINSLSHGVP 305
            L++++   E  ++   + +INNG    + C  +S + K      I  +       +++F + + FK+S  LK  + D++HS     +W +   L+  K   PL+ +    S I    F HK+I  R+D ++  S+ ++ +L++  P+ E   +L  N+     +       + ++      +D+ ++G+       K         FI +  DI    +    N++ +I+  P+  +DN   +IK+   ++    +   I+  +  D       LD+++  +        L  +LS G P
Sbjct:    8 LSRSWGGLEMYSIQTARQLINNGIETDLLCYKDSRVQKEAMSENIPVI---ISGYRNYFQISEYFKVSNTLKKNRYDIIHSHVSKDLWLMVPALKIPKLSTPLLLTKQMGSYIIKKDFLHKWIYKRVDLVLAISKVISKNLVDTTPLTENKIELLHNSIDTARFNPDKVDRNLVRKEFRVKDDELLIGMIARFSPGKGHE-----EFILAANDI----LHKHDNLRFMIVGEPSKGEDNYASEIKTMAARLDI--LDKIIFTGYRKDTPEVLAALDIFVFPSHAEAFGIALAEALSMGKP 293
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig99476.24057.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001BC1F85E7.450e-620.33Glycosyltransferase family 4 protein n=1 Tax=Melio... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.2000coord: 20..175
e-value: 9.1E-15
score: 56.8
NoneNo IPR availableGENE3D3.40.50.2000coord: 176..240
e-value: 9.1E-15
score: 56.8
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..6
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 7..13
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 19..327
NoneNo IPR availableSUPERFAMILY53756UDP-Glycosyltransferase/glycogen phosphorylasecoord: 20..272
IPR028098Glycosyltransferase subfamily 4-like, N-terminal domainPFAMPF13439Glyco_transf_4coord: 20..159
e-value: 1.7E-13
score: 51.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig99476contigP-canaliculata_contig99476:66..1046 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig99476.24057.1mRNA_P-canaliculata_contig99476.24057.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig99476 66..1046 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig99476.24057.1 ID=prot_P-canaliculata_contig99476.24057.1|Name=mRNA_P-canaliculata_contig99476.24057.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=327bp
MFRDKNFLIIALAKTFEAKERVALNYIQAIINNGGNVIVYCAANSPLDKA
VEKLGIKRLHYKARRVKSFFDLDKVFKISEILKTQQIDLVHSFDEVFIWW
LAFLLRNKPMVPLVHSIFKSSLINYNKFWHKFIINRIDHIMIPSEELATS
LLNKFPVKERTFKLNAFGIPNYTNIIKPADSIKTRLAWSEDDWVLGLTLE
HMQIKKKTLDSILNFIESFKDIDPKQIGDRRNVKLLILLPALEQDNKKIK
SFIEQIKAQRMGNFIYVHFLDDWLNEQTHLDLWIVLNSRYFMVDHLINSL
SHGVPILIPRKPFMMEWLELRRSYGES
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR028098Glyco_trans_4-like_N