mRNA_P-canaliculata_contig99476.24057.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig99476.24057.1 vs. uniprot
Match: UPI001BC1F85E (Glycosyltransferase family 4 protein n=1 Tax=Melioribacter sp. TaxID=2052167 RepID=UPI001BC1F85E) HSP 1 Score: 58.2 bits (139), Expect = 7.450e-6 Identity = 61/300 (20.33%), Postives = 129/300 (43.00%), Query Frame = 1 Query: 34 LAKTFEAKERVALNYIQAIINNGGNVIVYCAANSPLDKAVEKLGIKRLHYKARRVKSFFDLDKVFKISEILKTQQIDLVHSFDEVFIWWLAFLLR-NKPMVPLVHSIFKSSLINYNKFWHKFIINRIDHIMIPSEELATSLLNKFPVKERTFKL--NAFGIPNYTNIIKPADSIKTRLAWSEDDWVLGLTLEHMQIKKKTLDSILNFIESFKDIDPKQIGDRRNVKLLIL-LPALEQDN--KKIKSFIEQIKAQRMGNFIYVHFLDDWLNEQTHLDLWIVLNSRYFMVDHLINSLSHGVP 915
L++++ E ++ + +INNG + C +S + K I + +++F + + FK+S LK + D++HS +W + L+ K PL+ + S I F HK+I R+D ++ S+ ++ +L++ P+ E +L N+ + + ++ +D+ ++G+ K FI + DI + N++ +I+ P+ +DN +IK+ ++ + I+ + D LD+++ + L +LS G P
Sbjct: 8 LSRSWGGLEMYSIQTARQLINNGIETDLLCYKDSRVQKEAMSENIPVI---ISGYRNYFQISEYFKVSNTLKKNRYDIIHSHVSKDLWLMVPALKIPKLSTPLLLTKQMGSYIIKKDFLHKWIYKRVDLVLAISKVISKNLVDTTPLTENKIELLHNSIDTARFNPDKVDRNLVRKEFRVKDDELLIGMIARFSPGKGHE-----EFILAANDI----LHKHDNLRFMIVGEPSKGEDNYASEIKTMAARLDI--LDKIIFTGYRKDTPEVLAALDIFVFPSHAEAFGIALAEALSMGKP 293 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig99476.24057.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig99476.24057.1 >prot_P-canaliculata_contig99476.24057.1 ID=prot_P-canaliculata_contig99476.24057.1|Name=mRNA_P-canaliculata_contig99476.24057.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=327bp MFRDKNFLIIALAKTFEAKERVALNYIQAIINNGGNVIVYCAANSPLDKAback to top mRNA from alignment at P-canaliculata_contig99476:66..1046+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig99476.24057.1 ID=mRNA_P-canaliculata_contig99476.24057.1|Name=mRNA_P-canaliculata_contig99476.24057.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=981bp|location=Sequence derived from alignment at P-canaliculata_contig99476:66..1046+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig99476:66..1046+ >mRNA_P-canaliculata_contig99476.24057.1 ID=mRNA_P-canaliculata_contig99476.24057.1|Name=mRNA_P-canaliculata_contig99476.24057.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1962bp|location=Sequence derived from alignment at P-canaliculata_contig99476:66..1046+ (Pelvetia canaliculata dioecious)back to top |