mRNA_P-canaliculata_contig99476.24057.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig99476.24057.1
Unique NamemRNA_P-canaliculata_contig99476.24057.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig99476.24057.1 vs. uniprot
Match: UPI001BC1F85E (Glycosyltransferase family 4 protein n=1 Tax=Melioribacter sp. TaxID=2052167 RepID=UPI001BC1F85E)

HSP 1 Score: 58.2 bits (139), Expect = 7.450e-6
Identity = 61/300 (20.33%), Postives = 129/300 (43.00%), Query Frame = 1 
Query:   34 LAKTFEAKERVALNYIQAIINNGGNVIVYCAANSPLDKAVEKLGIKRLHYKARRVKSFFDLDKVFKISEILKTQQIDLVHSFDEVFIWWLAFLLR-NKPMVPLVHSIFKSSLINYNKFWHKFIINRIDHIMIPSEELATSLLNKFPVKERTFKL--NAFGIPNYTNIIKPADSIKTRLAWSEDDWVLGLTLEHMQIKKKTLDSILNFIESFKDIDPKQIGDRRNVKLLIL-LPALEQDN--KKIKSFIEQIKAQRMGNFIYVHFLDDWLNEQTHLDLWIVLNSRYFMVDHLINSLSHGVP 915
            L++++   E  ++   + +INNG    + C  +S + K      I  +       +++F + + FK+S  LK  + D++HS     +W +   L+  K   PL+ +    S I    F HK+I  R+D ++  S+ ++ +L++  P+ E   +L  N+     +       + ++      +D+ ++G+       K         FI +  DI    +    N++ +I+  P+  +DN   +IK+   ++    +   I+  +  D       LD+++  +        L  +LS G P
Sbjct:    8 LSRSWGGLEMYSIQTARQLINNGIETDLLCYKDSRVQKEAMSENIPVI---ISGYRNYFQISEYFKVSNTLKKNRYDIIHSHVSKDLWLMVPALKIPKLSTPLLLTKQMGSYIIKKDFLHKWIYKRVDLVLAISKVISKNLVDTTPLTENKIELLHNSIDTARFNPDKVDRNLVRKEFRVKDDELLIGMIARFSPGKGHE-----EFILAANDI----LHKHDNLRFMIVGEPSKGEDNYASEIKTMAARLDI--LDKIIFTGYRKDTPEVLAALDIFVFPSHAEAFGIALAEALSMGKP 293
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig99476.24057.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001BC1F85E7.450e-620.33Glycosyltransferase family 4 protein n=1 Tax=Melio... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig99476contigP-canaliculata_contig99476:66..1046 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size981
Cds size981
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817354.2811542-CDS-P-canaliculata_contig99476:65..10461622817354.2811542-CDS-P-canaliculata_contig99476:65..1046Pelvetia canaliculata dioeciousCDSP-canaliculata_contig99476 66..1046 +
1693495242.7494657-CDS-P-canaliculata_contig99476:65..10461693495242.7494657-CDS-P-canaliculata_contig99476:65..1046Pelvetia canaliculata dioeciousCDSP-canaliculata_contig99476 66..1046 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig99476.24057.1prot_P-canaliculata_contig99476.24057.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig99476 66..1046 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig99476.24057.1

>prot_P-canaliculata_contig99476.24057.1 ID=prot_P-canaliculata_contig99476.24057.1|Name=mRNA_P-canaliculata_contig99476.24057.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=327bp
MFRDKNFLIIALAKTFEAKERVALNYIQAIINNGGNVIVYCAANSPLDKA
VEKLGIKRLHYKARRVKSFFDLDKVFKISEILKTQQIDLVHSFDEVFIWW
LAFLLRNKPMVPLVHSIFKSSLINYNKFWHKFIINRIDHIMIPSEELATS
LLNKFPVKERTFKLNAFGIPNYTNIIKPADSIKTRLAWSEDDWVLGLTLE
HMQIKKKTLDSILNFIESFKDIDPKQIGDRRNVKLLILLPALEQDNKKIK
SFIEQIKAQRMGNFIYVHFLDDWLNEQTHLDLWIVLNSRYFMVDHLINSL
SHGVPILIPRKPFMMEWLELRRSYGES
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mRNA from alignment at P-canaliculata_contig99476:66..1046+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig99476.24057.1 ID=mRNA_P-canaliculata_contig99476.24057.1|Name=mRNA_P-canaliculata_contig99476.24057.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=981bp|location=Sequence derived from alignment at P-canaliculata_contig99476:66..1046+ (Pelvetia canaliculata dioecious)
ATGTTTAGGGATAAAAATTTCTTAATTATAGCCTTGGCAAAAACTTTTGA
AGCAAAAGAAAGAGTTGCTCTAAATTATATTCAAGCAATTATAAATAACG
GTGGTAATGTTATTGTTTATTGTGCTGCTAATTCGCCTCTCGATAAAGCG
GTTGAAAAGTTAGGTATAAAAAGACTTCATTATAAAGCGAGAAGAGTGAA
AAGCTTTTTTGACTTAGACAAAGTCTTCAAAATTAGTGAAATTTTGAAAA
CTCAACAAATTGATCTGGTTCATAGCTTTGATGAGGTTTTCATTTGGTGG
CTAGCTTTCTTATTAAGAAACAAACCTATGGTCCCATTAGTGCATTCTAT
TTTTAAGTCTAGTCTTATTAATTATAATAAGTTTTGGCATAAGTTTATTA
TAAATAGAATTGATCATATTATGATCCCCTCAGAAGAGCTTGCAACTTCA
CTTCTTAATAAGTTTCCAGTCAAAGAGAGGACTTTTAAGTTGAATGCTTT
TGGTATTCCAAATTATACAAATATTATTAAACCAGCTGATTCAATCAAGA
CGAGGCTTGCTTGGAGTGAAGATGATTGGGTCTTAGGTTTAACTTTAGAG
CATATGCAAATTAAAAAAAAGACTTTAGACTCTATTTTGAACTTTATTGA
ATCTTTTAAAGACATAGATCCTAAGCAGATAGGGGATAGGAGAAATGTAA
AACTTTTAATTTTACTTCCAGCTCTTGAGCAAGATAATAAAAAAATTAAA
AGTTTCATTGAGCAAATAAAAGCTCAGCGGATGGGTAATTTTATTTATGT
CCACTTCTTGGATGATTGGCTAAATGAACAAACCCATCTTGATTTATGGA
TCGTTTTAAATTCTCGCTACTTCATGGTTGATCACTTAATTAATTCCTTA
AGTCATGGTGTGCCGATTCTTATACCAAGAAAACCCTTTATGATGGAATG
GCTAGAATTAAGACGCTCATATGGCGAAAGC
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Coding sequence (CDS) from alignment at P-canaliculata_contig99476:66..1046+

>mRNA_P-canaliculata_contig99476.24057.1 ID=mRNA_P-canaliculata_contig99476.24057.1|Name=mRNA_P-canaliculata_contig99476.24057.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1962bp|location=Sequence derived from alignment at P-canaliculata_contig99476:66..1046+ (Pelvetia canaliculata dioecious)
ATGTTTAGGGATAAAAATTTCTTAATTATAGCCTTGGCAAAAACTTTTGA
AGCAAAAGAAAGAGTTGCTCTAAATTATATTCAAGCAATTATAAATAACG
GTGGTAATGTTATTGTTTATTGTGCTGCTAATTCGCCTCTCGATAAAGCG
GTTGAAAAGTTAGGTATAAAAAGACTTCATTATAAAGCGAGAAGAGTGAA
AAGCTTTTTTGACTTAGACAAAGTCTTCAAAATTAGTGAAATTTTGAAAA
CTCAACAAATTGATCTGGTTCATAGCTTTGATGAGGTTTTCATTTGGTGG
CTAGCTTTCTTATTAAGAAACAAACCTATGGTCCCATTAGTGCATTCTAT
TTTTAAGTCTAGTCTTATTAATTATAATAAGTTTTGGCATAAGTTTATTA
TAAATAGAATTGATCATATTATGATCCCCTCAGAAGAGCTTGCAACTTCA
CTTCTTAATAAGTTTCCAGTCAAAGAGAGGACTTTTAAGTTGAATGCTTT
TGGTATTCCAAATTATACAAATATTATTAAACCAGCTGATTCAATCAAGA
CGAGGCTTGCTTGGAGTGAAGATGATTGGGTCTTAGGTTTAACTTTAGAG
CATATGCAAATTAAAAAAAAGACTTTAGACTCTATTTTGAACTTTATTGA
ATCTTTTAAAGACATAGATCCTAAGCAGATAGGGGATAGGAGAAATGTAA
AACTTTTAATTTTACTTCCAGCTCTTGAGCAAGATAATAAAAAAATTAAA
AGTTTCATTGAGCAAATAAAAGCTCAGCGGATGGGTAATTTTATTTATGT
CCACTTCTTGGATGATTGGCTAAATGAACAAACCCATCTTGATTTATGGA
TCGTTTTAAATTCTCGCTACTTCATGGTTGATCACTTAATTAATTCCTTA
AGTCATGGTGTGCCGATTCTTATACCAAGAAAACCCTTTATGATGGAATG
GCTAGAATTAAGACGCTCATATGGCGAAAGCATGTTTAGGGATAAAAATT
TCTTAATTATAGCCTTGGCAAAAACTTTTGAAGCAAAAGAAAGAGTTGCT
CTAAATTATATTCAAGCAATTATAAATAACGGTGGTAATGTTATTGTTTA
TTGTGCTGCTAATTCGCCTCTCGATAAAGCGGTTGAAAAGTTAGGTATAA
AAAGACTTCATTATAAAGCGAGAAGAGTGAAAAGCTTTTTTGACTTAGAC
AAAGTCTTCAAAATTAGTGAAATTTTGAAAACTCAACAAATTGATCTGGT
TCATAGCTTTGATGAGGTTTTCATTTGGTGGCTAGCTTTCTTATTAAGAA
ACAAACCTATGGTCCCATTAGTGCATTCTATTTTTAAGTCTAGTCTTATT
AATTATAATAAGTTTTGGCATAAGTTTATTATAAATAGAATTGATCATAT
TATGATCCCCTCAGAAGAGCTTGCAACTTCACTTCTTAATAAGTTTCCAG
TCAAAGAGAGGACTTTTAAGTTGAATGCTTTTGGTATTCCAAATTATACA
AATATTATTAAACCAGCTGATTCAATCAAGACGAGGCTTGCTTGGAGTGA
AGATGATTGGGTCTTAGGTTTAACTTTAGAGCATATGCAAATTAAAAAAA
AGACTTTAGACTCTATTTTGAACTTTATTGAATCTTTTAAAGACATAGAT
CCTAAGCAGATAGGGGATAGGAGAAATGTAAAACTTTTAATTTTACTTCC
AGCTCTTGAGCAAGATAATAAAAAAATTAAAAGTTTCATTGAGCAAATAA
AAGCTCAGCGGATGGGTAATTTTATTTATGTCCACTTCTTGGATGATTGG
CTAAATGAACAAACCCATCTTGATTTATGGATCGTTTTAAATTCTCGCTA
CTTCATGGTTGATCACTTAATTAATTCCTTAAGTCATGGTGTGCCGATTC
TTATACCAAGAAAACCCTTTATGATGGAATGGCTAGAATTAAGACGCTCA
TATGGCGAAAGC
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