mRNA_P-canaliculata_contig99437.24056.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig99437.24056.1
Unique NamemRNA_P-canaliculata_contig99437.24056.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig99437.24056.1 vs. uniprot
Match: D7FQA1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQA1_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 1.390e-26
Identity = 52/78 (66.67%), Postives = 62/78 (79.49%), Query Frame = -1 
Query:  193 FGTIYACAAQRGNLTKVGVQTLSEEMTRFFNTVVLDMDGTSVRFEDMHHGYGSNGDSLLWVTVGVEVRRVPNPKNMKF 426
            FG I+A  AQRG LT +G++TLSEEMT FFNTVVLD+DGT+VRF DM+HGY S G+  L VTV V V R+P P+NMKF
Sbjct:  236 FGKIHARVAQRGRLTDLGIRTLSEEMTHFFNTVVLDLDGTAVRFRDMYHGYNSRGEPSLRVTVSVVVHRLPKPENMKF 313
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig99437.24056.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQA1_ECTSI1.390e-2666.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig99437contigP-canaliculata_contig99437:333..758 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size428
Cds size360
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817354.2305298-UTR-P-canaliculata_contig99437:332..3981622817354.2305298-UTR-P-canaliculata_contig99437:332..398Pelvetia canaliculata dioeciousUTRP-canaliculata_contig99437 333..398 +
1693495242.7278285-UTR-P-canaliculata_contig99437:332..3981693495242.7278285-UTR-P-canaliculata_contig99437:332..398Pelvetia canaliculata dioeciousUTRP-canaliculata_contig99437 333..398 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817354.2437403-CDS-P-canaliculata_contig99437:398..7581622817354.2437403-CDS-P-canaliculata_contig99437:398..758Pelvetia canaliculata dioeciousCDSP-canaliculata_contig99437 399..758 +
1693495242.738682-CDS-P-canaliculata_contig99437:398..7581693495242.738682-CDS-P-canaliculata_contig99437:398..758Pelvetia canaliculata dioeciousCDSP-canaliculata_contig99437 399..758 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig99437.24056.1prot_P-canaliculata_contig99437.24056.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig99437 399..758 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig99437.24056.1

>prot_P-canaliculata_contig99437.24056.1 ID=prot_P-canaliculata_contig99437.24056.1|Name=mRNA_P-canaliculata_contig99437.24056.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=120bp
MTCKRALSHVQTHATTIHLCRATSPTIMRRALQRSRYASDDSEFHVLRVR
YSANLNAHRHPQERIPVAAIAVMHVFKAYGCAVHVEDDGVEEASHLLRES
LNAYLCQVASLRRASVDRTK
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mRNA from alignment at P-canaliculata_contig99437:333..758+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig99437.24056.1 ID=mRNA_P-canaliculata_contig99437.24056.1|Name=mRNA_P-canaliculata_contig99437.24056.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=426bp|location=Sequence derived from alignment at P-canaliculata_contig99437:333..758+ (Pelvetia canaliculata dioecious)
GTGCTATCATGAGCTAATGTCATAATTACATTTCGTGTTACCTACTGCTG
TTTCCTCCATTTTTTTATGACTTGCAAGAGGGCACTGTCACACGTGCAAA
CCCACGCGACCACGATCCATCTATGCCGAGCCACTTCACCCACGATCATG
AGGAGAGCGCTTCAACGTAGCCGATATGCATCGGATGATTCAGAATTTCA
TGTTCTTCGGGTTAGGTACTCGGCGAACCTCAACGCCCACCGTCACCCAC
AAGAGCGAATCCCCGTTGCTGCCATAGCCGTGATGCATGTCTTCAAAGCG
TACGGATGTGCCGTCCATGTCGAGGACGACGGTGTTGAAGAAGCGAGTCA
TCTCCTCCGAGAGAGTTTGAACGCCTACCTTTGTCAAGTTGCCTCGTTGC
GCCGCGCAAGCGTAGATCGTACCAAA
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Coding sequence (CDS) from alignment at P-canaliculata_contig99437:333..758+

>mRNA_P-canaliculata_contig99437.24056.1 ID=mRNA_P-canaliculata_contig99437.24056.1|Name=mRNA_P-canaliculata_contig99437.24056.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=720bp|location=Sequence derived from alignment at P-canaliculata_contig99437:333..758+ (Pelvetia canaliculata dioecious)
ATGACTTGCAAGAGGGCACTGTCACACGTGCAAACCCACGCGACCACGAT
CCATCTATGCCGAGCCACTTCACCCACGATCATGAGGAGAGCGCTTCAAC
GTAGCCGATATGCATCGGATGATTCAGAATTTCATGTTCTTCGGGTTAGG
TACTCGGCGAACCTCAACGCCCACCGTCACCCACAAGAGCGAATCCCCGT
TGCTGCCATAGCCGTGATGCATGTCTTCAAAGCGTACGGATGTGCCGTCC
ATGTCGAGGACGACGGTGTTGAAGAAGCGAGTCATCTCCTCCGAGAGAGT
TTGAACGCCTACCTTTGTCAAGTTGCCTCGTTGCGCCGCGCAAGCGTAGA
TCGTACCAAAATGACTTGCAAGAGGGCACTGTCACACGTGCAAACCCACG
CGACCACGATCCATCTATGCCGAGCCACTTCACCCACGATCATGAGGAGA
GCGCTTCAACGTAGCCGATATGCATCGGATGATTCAGAATTTCATGTTCT
TCGGGTTAGGTACTCGGCGAACCTCAACGCCCACCGTCACCCACAAGAGC
GAATCCCCGTTGCTGCCATAGCCGTGATGCATGTCTTCAAAGCGTACGGA
TGTGCCGTCCATGTCGAGGACGACGGTGTTGAAGAAGCGAGTCATCTCCT
CCGAGAGAGTTTGAACGCCTACCTTTGTCAAGTTGCCTCGTTGCGCCGCG
CAAGCGTAGATCGTACCAAA
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