mRNA_P-canaliculata_contig99427.24055.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig99427.24055.1
Unique NamemRNA_P-canaliculata_contig99427.24055.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig99427.24055.1 vs. uniprot
Match: X6NY14_RETFI (WD-40 repeat protein n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6NY14_RETFI)

HSP 1 Score: 71.2 bits (173), Expect = 2.740e-11
Identity = 34/114 (29.82%), Postives = 63/114 (55.26%), Query Frame = 1
Query:    4 LWDANTGVKINTLAVDEEKIECVAFSSDGETVACATSNGTVQIWNARSGKEMRRFEK-RGMDFIAFHPDGEQLVSSYRDCSLWNGITGRESVLLQG-IDRPHDALFNPDGRQLI 339
            +WD  +G +I T       +    FSSD +++   + +GT+++WN +SGKE+++ E+ R +  I    DG  ++SS R   LW   +G +   ++G  D  +   F+PDG+ ++
Sbjct:    1 MWDIGSGKQIQTFKGHSYWVYTAKFSSDNQSIVSCSRDGTIRLWNVKSGKEVKKLEECRVVTDINLSLDGRHMISSSRIIKLWEMHSGIKIRQMEGHTDMINSIEFSPDGKMIV 114          
BLAST of mRNA_P-canaliculata_contig99427.24055.1 vs. uniprot
Match: A0A5N6DS53_ASPPA (Quinon protein alcohol dehydrogenase-like superfamily n=1 Tax=Aspergillus parasiticus TaxID=5067 RepID=A0A5N6DS53_ASPPA)

HSP 1 Score: 69.3 bits (168), Expect = 5.220e-10
Identity = 50/201 (24.88%), Postives = 92/201 (45.77%), Query Frame = 1
Query:   31 INTLAVDEEKIECVAFSSDGETVACATSNGTVQIWNARSGK--EMRRFEKRGMDFIAFHPDGEQLVSS-YRDCSLWNGITGRESVLLQGIDRPHDALFNPDGRQLILFGKNDRHKNATVYDTNTGEQLLEVKLGEGFGRVAFSPDSSRFAACDDEAIRIFDANNGSEIDKLKAFPKIAKARRVKIESVVFSPDGTQLLYSA 624
            ++T+    +K+ CV  S DG++VA A+ + TV++W+  + +  ++ R  +  +  + F  +   L ++ Y    +W   TG   VL   +   ++   +PD  +L+      R + + +Y  N   Q L      GF  + FSPDS R    D+E + I+DA   + +              ++ E  VFS D   +LY +
Sbjct:  982 LHTIQGHSDKVLCVRCSPDGKSVASASGDHTVRVWDVSTWRCLQVLRGHEAPVHTVEFLSNTSLLTAAIYETVRIWYLDTGESKVLNAPVSN-YEVELSPDSTKLVC---KVRDRGSHIYLYNLETQDLSYLTSGGFDGILFSPDSRRIVFHDEEHVYIWDAIAKAHLQTFNC---------LRPEKPVFSSDSKLVLYGS 1169          
BLAST of mRNA_P-canaliculata_contig99427.24055.1 vs. uniprot
Match: UPI00168957F2 (pentapeptide repeat-containing protein n=2 Tax=Cyanobacteria TaxID=1117 RepID=UPI00168957F2)

HSP 1 Score: 68.6 bits (166), Expect = 7.550e-10
Identity = 35/97 (36.08%), Postives = 58/97 (59.79%), Query Frame = 1
Query:    4 LWDANTGVKINTLAVDEEKIECVAFSSDGETVACATSNGTVQIWNARSGKEMRRFEKRGMDF-IAFHPDGEQLVSSYRDCS-LWNGITGRESVLLQG 288
            LW   +G   +TL    + IE +AF+ DG ++A  + +GT+++WN ++G  +R F+ R   + IA  PDG+ LVS + D +  WN  TG+ +  L+G
Sbjct:  343 LWALASGTLQHTLLAHTQDIEAIAFTPDGRSLATGSYDGTIRLWNLKTGAAIRTFDARSKVWSIAISPDGKTLVSGHGDFARTWNLKTGQLTHSLKG 439          
BLAST of mRNA_P-canaliculata_contig99427.24055.1 vs. uniprot
Match: A0A517XLH4_9BACT (ECF RNA polymerase sigma factor SigE n=1 Tax=Urbifossiella limnaea TaxID=2528023 RepID=A0A517XLH4_9BACT)

HSP 1 Score: 67.8 bits (164), Expect = 1.460e-9
Identity = 51/195 (26.15%), Postives = 87/195 (44.62%), Query Frame = 1
Query:   31 INTLAVDEEKIECVAFSSDGETVACATSNGTVQIWNARSGKEMRRFEKRGMDFIAFHPDGEQLVSSYRDCSLWNGITGRESVLLQGIDRPHDALFNPDGRQLILFGKNDRHKNATVYDTNTGEQLLEVKLGEGFGRVAFSPDSSRFAACDDEAIRIFDANNGSEIDKLKAFPKIAKARRVKIESVVFSPDGTQLL 615
            + TL     ++  V++S DG  +A A+ +GTV++W+AR+G+E+ R    G D +   PD   LV   R+ +                   H   + PD   L    +  + K A +     G ++       G    AFSPDS R A    + ++++D  +  ++  L+A P     + + +  V FSPDG  L+
Sbjct:  276 VRTLKGHANRVTGVSYSPDGTQLASASWDGTVRVWDARTGRELYRL---GADEL---PDRRPLVGEPREWTF------------------HHVEYAPDANSLAAVRREPQDKFAVLQWDRAGTKIRSYPADGGC--FAFSPDSKRIACGGYQTVKLYDLTDEGKL--LRATPP--DDQHLTVSRVRFSPDGKTLV 440          
BLAST of mRNA_P-canaliculata_contig99427.24055.1 vs. uniprot
Match: A0A6F8XMC8_9ACTN (Uncharacterized protein n=1 Tax=Phytohabitans flavus TaxID=1076124 RepID=A0A6F8XMC8_9ACTN)

HSP 1 Score: 65.1 bits (157), Expect = 2.420e-9
Identity = 43/167 (25.75%), Postives = 73/167 (43.71%), Query Frame = 1
Query:    4 LWDANTGVKINTLAVDEEKIECVAFSSDGETVACATSNGTVQIWNARSGKEMRRFEK----RGMDFIAFHPDGEQLVSSY--RDCSLWNGITGRE--SVLLQGIDRPHDALFNPDGRQLILFGKNDRHKNATVYDTNTGE---QLLEVKLGEGFGRVAFSPDSSRFA 471
            +WD     +   + + +  +  +  S DG  +A  +SNG +++WNAR+G  + +         +    F PD   L +    R    W+   GR+    L        DA +  DG++L++       +  T++D  TG+   +LL +     F  VA SPD  RFA
Sbjct:   25 VWDTTARRRRAHIVIPDYNMWAMQLSPDGRLLATGSSNGHLEVWNARTGHLVHKLPYGPGGSSISGARFSPDSNTLAAGGDGRTVRFWSMNDGRQVGPTLTGFAGTVADAAYTLDGKRLVVCAA----EQVTIWDPTTGDMVAELLAIADDTNFYSVAVSPDGGRFA 187          
BLAST of mRNA_P-canaliculata_contig99427.24055.1 vs. uniprot
Match: A0A6L8EZ47_9BACT (WD40 repeat domain-containing protein n=1 Tax=Candidatus Poribacteria bacterium TaxID=2026781 RepID=A0A6L8EZ47_9BACT)

HSP 1 Score: 66.6 bits (161), Expect = 3.660e-9
Identity = 38/124 (30.65%), Postives = 62/124 (50.00%), Query Frame = 1
Query:    4 LWDANTGVKINTLAVDEEKIECVAFSSDGETVACATSNGTVQIWNARSGKEMRRFE--------KRGMDFIAFHPDGEQLVSSY---RDCSLWNGITGRESVLLQGI-DRPHDALFNPDGRQLI 339
            LWD       N L  D  +I  +AFS  GETVA AT N  +Q+W+  +GK ++              + FIA+  DG++L S     R   +W+  TG+    +  + +R ++  ++PDG+ L+
Sbjct:  109 LWDLQARKLKNVLVGDANRIGALAFSPTGETVAGATWNNAIQLWDRHTGKLLKTLIGHTDLNTFSMSIHFIAYSDDGKRLASGGWEDRTIRIWDVETGQRLQTITALPERIYNVAYSPDGQSLV 232          
BLAST of mRNA_P-canaliculata_contig99427.24055.1 vs. uniprot
Match: A0A7S3PGX0_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PGX0_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 5.510e-9
Identity = 45/141 (31.91%), Postives = 65/141 (46.10%), Query Frame = 1
Query:   10 DANTGVKINTLAVDEEK-IECVAFSSDGETVACATSNGTVQIWNARSGKEMRRFEKRGMDFIAFHPDGEQLVSSYRDCSLWNGITGRESVLLQGIDRPHDAL-FNPDGRQLILFGKNDRHKNATVYDTNTGEQLLEVKLGE 426
            D   G  IN + V+ +  I  VA S DG   A A+ +GTV +WN ++G  +R      +  I F PDG+ L +S     +WN  TG     + G  +  D+L F+ DG+   L    D   N  V+     + L E  L E
Sbjct:  830 DQGKGNNINRIIVEHKDWIVNVAVSPDGRYAATASKDGTVGLWNVKTGMHVRFLPANSVSIIHFSPDGKFLAASGTKLMIWNVQTGELDTEVAGHSQKADSLVFSEDGQ---LIKSIDVLGNLVVWSRENRKILDESTLTE 967          
BLAST of mRNA_P-canaliculata_contig99427.24055.1 vs. uniprot
Match: A0A7W0MJ02_9BACT (Caspase family protein n=1 Tax=Pyrinomonadaceae bacterium TaxID=2283092 RepID=A0A7W0MJ02_9BACT)

HSP 1 Score: 66.2 bits (160), Expect = 5.570e-9
Identity = 33/101 (32.67%), Postives = 61/101 (60.40%), Query Frame = 1
Query:    4 LWDANTGVKINTLAVDEEKIECVAFSSDGETVACATSNGTVQIWNARSGKEMRRFEK----RGMDFIAFHPDGEQLVSSYRD--CSLWNGITGRESVLLQG 288
            LWD  TG K+++L V + ++E +AFS DG+T+A  + N T+++W++++G  +R  E+    R +  +AF P+G+ L +       +LW   TG++    +G
Sbjct:  100 LWDVTTGAKLHSLEVSKYRVESLAFSGDGQTIATGSQN-TIKLWDSKTGTHLRSLEECLGCRVLS-LAFSPEGKMLANGNTGGRLNLWEIPTGKQVRFYKG 198          
BLAST of mRNA_P-canaliculata_contig99427.24055.1 vs. uniprot
Match: A0A7C4YIT6_9BACT (WD40 repeat domain-containing protein n=1 Tax=Gemmataceae bacterium TaxID=2052164 RepID=A0A7C4YIT6_9BACT)

HSP 1 Score: 63.5 bits (153), Expect = 4.120e-8
Identity = 50/172 (29.07%), Postives = 83/172 (48.26%), Query Frame = 1
Query:   70 VAFSSDGETVACATSNGTVQIWNARSGKEMRRFEKRGMDF--IAFHPDGEQLVSSY--RDCSLWNGITGRESVLLQGID----RPHDALFNPDGRQLILFGKNDRHKNATVYDTNTGEQLLEV--KLGEGFGRVAFSPDSSRFAACD--DEAIRIFDANNGSEIDKLKAFPK 549
            V FS DGET+A A+ +G++++WN R  KE+       + +  +AF P+   L ++   R   +W+  TG   +++ G D    R  + +F PDG  L  +   ++     V+D   G ++  V  +L   F  + FS +S   AAC      I I++   G E  +L   PK
Sbjct:  256 VTFSLDGETLAVASHDGSIRLWNMREKKELPPLLDEHVYYAALAFAPNSRYLAAANGPRGPRVWDLRTG---LMMPGFDGHLQRMGELVFAPDGDALASYS--EQSARIFVWDV-AGRKVRHVFGELRATFSHLRFSRNSEMLAACSGRQNTIIIWNTRTGKEDVRLPVHPK 421          
BLAST of mRNA_P-canaliculata_contig99427.24055.1 vs. uniprot
Match: A0A517YAB6_9BACT (WD domain, G-beta repeat n=2 Tax=Anatilimnocola aggregata TaxID=2528021 RepID=A0A517YAB6_9BACT)

HSP 1 Score: 62.8 bits (151), Expect = 5.060e-8
Identity = 43/145 (29.66%), Postives = 66/145 (45.52%), Query Frame = 1
Query:   61 IECVAFSSDGETVACATSNGTVQIWNARSGKEMRRFEKRGMDF--IAFHPDGEQLVSSYRD-----CSLWNGITGRESVLLQGIDRPHDALF----------------NPDGRQLILFGKNDRHKNAT--VYDTNTGEQLLEVKL 420
            I  +A S DG+  A    +G + +W A  GK M +    G     +AFHPDG++L+S+ R        +W   TG+E    + ID P  + +                +PDG  L+  G N+    A   ++D  TGE  L++KL
Sbjct:  104 IYALAASPDGKLFATGDRDGNIHVWQASDGKRMHKLRIEGHPVYGLAFHPDGQRLISADRQPKKPRLKVWEFATGKEQ---RSIDVPQLSAYRRVEDIEWGGIRGITISPDGNTLVACGSNEYSGPACALLFDIATGE--LKLKL 243          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig99427.24055.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
X6NY14_RETFI2.740e-1129.82WD-40 repeat protein n=1 Tax=Reticulomyxa filosa T... [more]
A0A5N6DS53_ASPPA5.220e-1024.88Quinon protein alcohol dehydrogenase-like superfam... [more]
UPI00168957F27.550e-1036.08pentapeptide repeat-containing protein n=2 Tax=Cya... [more]
A0A517XLH4_9BACT1.460e-926.15ECF RNA polymerase sigma factor SigE n=1 Tax=Urbif... [more]
A0A6F8XMC8_9ACTN2.420e-925.75Uncharacterized protein n=1 Tax=Phytohabitans flav... [more]
A0A6L8EZ47_9BACT3.660e-930.65WD40 repeat domain-containing protein n=1 Tax=Cand... [more]
A0A7S3PGX0_9STRA5.510e-931.91Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A7W0MJ02_9BACT5.570e-932.67Caspase family protein n=1 Tax=Pyrinomonadaceae ba... [more]
A0A7C4YIT6_9BACT4.120e-829.07WD40 repeat domain-containing protein n=1 Tax=Gemm... [more]
A0A517YAB6_9BACT5.060e-829.66WD domain, G-beta repeat n=2 Tax=Anatilimnocola ag... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig99427contigP-canaliculata_contig99427:33..959 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score76.3
Seed ortholog evalue2.1e-11
Seed eggNOG ortholog29850.GGTG_08525T0
EggNOG free text desc.N-terminal domain of NWD NACHT-NTPase
EggNOG OGs214K0@147550,3AEW9@33154,3PBZP@4751,3R2IA@4890,KOG0266@1,KOG0266@2759
COG Functional cat.S
Best tax levelSordariomycetes
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size669
Cds size669
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817354.191614-CDS-P-canaliculata_contig99427:32..4011622817354.191614-CDS-P-canaliculata_contig99427:32..401Pelvetia canaliculata dioeciousCDSP-canaliculata_contig99427 33..401 +
1693495242.7010837-CDS-P-canaliculata_contig99427:32..4011693495242.7010837-CDS-P-canaliculata_contig99427:32..401Pelvetia canaliculata dioeciousCDSP-canaliculata_contig99427 33..401 +
1622817354.2020366-CDS-P-canaliculata_contig99427:659..9591622817354.2020366-CDS-P-canaliculata_contig99427:659..959Pelvetia canaliculata dioeciousCDSP-canaliculata_contig99427 660..959 +
1693495242.7161403-CDS-P-canaliculata_contig99427:659..9591693495242.7161403-CDS-P-canaliculata_contig99427:659..959Pelvetia canaliculata dioeciousCDSP-canaliculata_contig99427 660..959 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig99427.24055.1prot_P-canaliculata_contig99427.24055.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig99427 33..959 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig99427.24055.1

>prot_P-canaliculata_contig99427.24055.1 ID=prot_P-canaliculata_contig99427.24055.1|Name=mRNA_P-canaliculata_contig99427.24055.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=223bp
TLWDANTGVKINTLAVDEEKIECVAFSSDGETVACATSNGTVQIWNARSG
KEMRRFEKRGMDFIAFHPDGEQLVSSYRDCSLWNGITGRESVLLQGIDRP
HDALFNPDGRQLILFGKNDRHKNATVYDTNTGEQLLEVKLGEGFGRVAFS
PDSSRFAACDDEAIRIFDANNGSEIDKLKAFPKIAKARRVKIESVVFSPD
GTQLLYSAMREPPTLWTFKANP*
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mRNA from alignment at P-canaliculata_contig99427:33..959+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig99427.24055.1 ID=mRNA_P-canaliculata_contig99427.24055.1|Name=mRNA_P-canaliculata_contig99427.24055.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=927bp|location=Sequence derived from alignment at P-canaliculata_contig99427:33..959+ (Pelvetia canaliculata dioecious)
ACGCTTTGGGACGCCAACACTGGCGTGAAAATAAATACGCTTGCAGTGGA TGAGGAGAAAATCGAATGTGTTGCATTCAGCTCCGATGGTGAAACAGTCG CGTGTGCGACTTCCAATGGCACAGTGCAAATTTGGAATGCCAGATCTGGA AAAGAGATGAGGAGATTCGAAAAACGCGGGATGGACTTTATCGCATTTCA CCCCGACGGCGAACAACTTGTTTCTAGCTACCGCGATTGCAGTTTGTGGA ATGGAATCACTGGGCGAGAGTCCGTACTACTTCAAGGGATTGATCGCCCG CACGATGCTTTATTCAATCCTGACGGACGTCAACTCATCTTGTTCGGAAA AAACGACAGACATAAGAACGTATCAAAATTGTTCGACTTAGAAAAAGGGC GAGCGCTGCGGAATCTTGGTGATTCAATCTTTGCCACGTTTAGCCTCGAT GGAACGAGATTGGCTTCCCGAAAAGACGACGACCTGTTCCTGATAGACAC CACTGGAAGCTGTAAGACAGTGGCCAAATTACCGAGCGTTCCAAATAAAG ACACCTCTGATTCACCAGCTGGATATCACGCCTTCAGTCCCGACAGCTCA AAGATAATCGTGGCCGGCATGAAGAAGGCTACGGTCTACGATACCAACAC AGGAGAACAGCTGTTGGAAGTAAAACTTGGGGAGGGTTTTGGACGAGTTG CCTTTAGTCCAGACTCTTCACGGTTCGCTGCCTGTGATGACGAAGCGATC AGAATATTTGATGCTAACAACGGTAGCGAGATCGACAAGTTGAAAGCTTT CCCCAAGATCGCGAAAGCACGCCGAGTGAAAATTGAAAGTGTCGTATTCA GTCCCGACGGAACTCAACTCTTATACTCCGCGATGAGAGAACCTCCGACA TTATGGACTTTCAAAGCCAACCCGTGA
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Coding sequence (CDS) from alignment at P-canaliculata_contig99427:33..959+

>mRNA_P-canaliculata_contig99427.24055.1 ID=mRNA_P-canaliculata_contig99427.24055.1|Name=mRNA_P-canaliculata_contig99427.24055.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1338bp|location=Sequence derived from alignment at P-canaliculata_contig99427:33..959+ (Pelvetia canaliculata dioecious)
ACGCTTTGGGACGCCAACACTGGCGTGAAAATAAATACGCTTGCAGTGGA
TGAGGAGAAAATCGAATGTGTTGCATTCAGCTCCGATGGTGAAACAGTCG
CGTGTGCGACTTCCAATGGCACAGTGCAAATTTGGAATGCCAGATCTGGA
AAAGAGATGAGGAGATTCGAAAAACGCGGGATGGACTTTATCGCATTTCA
CCCCGACGGCGAACAACTTGTTTCTAGCTACCGCGATTGCAGTTTGTGGA
ATGGAATCACTGGGCGAGAGTCCGTACTACTTCAAGGGATTGATCGCCCG
CACGATGCTTTATTCAATCCTGACGGACGTCAACTCATCTTGTTCGGAAA
AAACGACAGACATAAGAACACGCTTTGGGACGCCAACACTGGCGTGAAAA
TAAATACGCTTGCAGTGGATGAGGAGAAAATCGAATGTGTTGCATTCAGC
TCCGATGGTGAAACAGTCGCGTGTGCGACTTCCAATGGCACAGTGCAAAT
TTGGAATGCCAGATCTGGAAAAGAGATGAGGAGATTCGAAAAACGCGGGA
TGGACTTTATCGCATTTCACCCCGACGGCGAACAACTTGTTTCTAGCTAC
CGCGATTGCAGTTTGTGGAATGGAATCACTGGGCGAGAGTCCGTACTACT
TCAAGGGATTGATCGCCCGCACGATGCTTTATTCAATCCTGACGGACGTC
AACTCATCTTGTTCGGAAAAAACGACAGACATAAGAACGCTACGGTCTAC
GATACCAACACAGGAGAACAGCTGTTGGAAGTAAAACTTGGGGAGGGTTT
TGGACGAGTTGCCTTTAGTCCAGACTCTTCACGGTTCGCTGCCTGTGATG
ACGAAGCGATCAGAATATTTGATGCTAACAACGGTAGCGAGATCGACAAG
TTGAAAGCTTTCCCCAAGATCGCGAAAGCACGCCGAGTGAAAATTGAAAG
TGTCGTATTCAGTCCCGACGGAACTCAACTCTTATACTCCGCGATGAGAG
AACCTCCGACATTATGGACTTTCAAAGCCAACCCGTGAGCTACGGTCTAC
GATACCAACACAGGAGAACAGCTGTTGGAAGTAAAACTTGGGGAGGGTTT
TGGACGAGTTGCCTTTAGTCCAGACTCTTCACGGTTCGCTGCCTGTGATG
ACGAAGCGATCAGAATATTTGATGCTAACAACGGTAGCGAGATCGACAAG
TTGAAAGCTTTCCCCAAGATCGCGAAAGCACGCCGAGTGAAAATTGAAAG
TGTCGTATTCAGTCCCGACGGAACTCAACTCTTATACTCCGCGATGAGAG
AACCTCCGACATTATGGACTTTCAAAGCCAACCCGTGA
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