prot_P-canaliculata_contig10152.240.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig10152.240.1
Unique Nameprot_P-canaliculata_contig10152.240.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length207
Homology
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BLAST of mRNA_P-canaliculata_contig10152.240.1 vs. uniprot
Match: A0A6H5K0L1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0L1_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 2.720e-11
Identity = 53/168 (31.55%), Postives = 85/168 (50.60%), Query Frame = 0 
Query:   33 LLHKVCDFEGRP------------SLDGGSCRMATEPPRGGQSHLLLKGIKAVGQGDCGMPSISAFFSAGP-SHKTDRIISHVKVGHD---GVIQAAVFYPSMQVLWPDVYAAKNVQEVEVDVAVDLRWGDEEINCAGPSLKVTYRRPPVQATEATAASMIVCRRISP 184
            LL + CDF+GR             S +G     +T+ P      L  KGI+ V  G   + +++A FS GP  +      ++++   +   G     + YPSM+ +WP+VY+A++V+ VEVD+ VD+R  D +   + PS+KV YRR    A  AT   +  C ++ P
Sbjct:  432 LLRQECDFDGRSAAAVPAASATSASANGVCASSSTKKP----CRLRFKGIEGVDYGIRDL-AVTAQFSVGPPGNLVGTAPTNLEADRNACAGSSSCTITYPSMEDIWPEVYSARSVKVVEVDMTVDVRSSDGKWVHSWPSVKVMYRR----ARTATTPQVQRCVKVPP 590
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BLAST of mRNA_P-canaliculata_contig10152.240.1 vs. uniprot
Match: D8LCK7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCK7_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 1.180e-8
Identity = 31/77 (40.26%), Postives = 49/77 (63.64%), Query Frame = 0 
Query:  105 GHDGVIQAAVFYPSMQVLWPDVYAAKNVQEVEVDVAVDLRWGDEEINCAGPSLKVTYRRPPVQA---TEATAASMIV 178
            G  G + AAV +PS+  +WP+VY   N++ +EVD+ V++R  D  I   GP+LK+TYRR   +    T+A AA+ ++
Sbjct:  565 GRRGRVDAAVEFPSIMEIWPEVYKVDNIRVMEVDMVVEVRSSDGNILYTGPTLKITYRRSAARTSAPTDAAAAAALM 641
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10152.240.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K0L1_9PHAE2.720e-1131.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCK7_ECTSI1.180e-840.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10152contigP-canaliculata_contig10152:6761..8545 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10152.240.1mRNA_P-canaliculata_contig10152.240.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig10152 3785..8644 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig10152.240.1 ID=prot_P-canaliculata_contig10152.240.1|Name=mRNA_P-canaliculata_contig10152.240.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=207bp
MDSGQVARMDDSGVDSQDDSDLNGDERYPEVELLHKVCDFEGRPSLDGGS
CRMATEPPRGGQSHLLLKGIKAVGQGDCGMPSISAFFSAGPSHKTDRIIS
HVKVGHDGVIQAAVFYPSMQVLWPDVYAAKNVQEVEVDVAVDLRWGDEEI
NCAGPSLKVTYRRPPVQATEATAASMIVCRRISPTPNDVPAEGGTMRDDY
CGDFFM*
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