mRNA_P-canaliculata_contig9937.24049.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig9937.24049.1
Unique NamemRNA_P-canaliculata_contig9937.24049.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
[Close]
BLAST of mRNA_P-canaliculata_contig9937.24049.1 vs. uniprot
Match: D7G3K8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3K8_ECTSI)

HSP 1 Score: 327 bits (839), Expect = 1.280e-95
Identity = 265/577 (45.93%), Postives = 322/577 (55.81%), Query Frame = 1 
Query:  121 ECLALGNTDNNESVQGLVRSAGCLWLGVFGLPPVPSGEEE-EIVDLWPRKVARFTEDGVAGVLALEGKPDATGPLAAPK-GEGGESDTIAGACEAYNLIARALAELRPFVPAPPDPYEAA---RTPTAPNRSSVLYAKKWPTGEASDAVDTATNGHSG--KTLSPDDSEVEE------DXXXXXXXXXAFVGDKRPVTARALSTRSGGRKSAPALGKRRAGRRRRRVTMSSYKRRSLRDDGGLEAEEEEGDXXXXRAG-KKRGKRGVVPEAEDEADEDPEGARRGAVGVGAGEMTVAAVRASLLRNRADE---GPKPQGEEWEDTVKRFIKHVESLPAGTTQEELSLIFAAALDPTLVRMRAANASLIGLAD--VSASRELSIHDDDXXXXXXXXXXXXGYGGAWSATRGSRGRGRFKVRLELDATDGDEQPPEGIAGLLRAVAEARAAVEATARAEACVAAAGDTLGGLQELKSDYKRSLPTGPREPIQLIIAEEQERVLGYKSAHEIIVRQRIEELCDAGSRVGEAYRTGEAESGWSSVKSQVDKFLRKFTKYSVSRLPS-LGSIPDLLGLGVAS 1791
            E  AL NT++NES+QGLVRS G LW+G FGLP  P+GE+E E+VD+WPRKVARF EDG  G   LEGKP+  G LAA K G       +  A  A+ LIA+AL ELRP VP PP           P +P+ SS    K    G+A  +V  +    SG  K  +    +V+       DXXXXXXXXX                                            + R      G+E  ++   XXXX  G + RG     P                    GAGEMTVAAVR SLL N ++E   GP PQ  EWE  VK+FI HVESLP GT QEELSL+FAAALDPTLVR+R AN  L+GLA+  +      +  DDD  XXXXXXXXXX   GA  +         FKVRLEL+A +    PP+GIAG+LRAVA A AAVEA AR EACV   GDTLGGL E+K DYKR LP GPREP+Q IIAEE+ RV GY  AHE ++R+  E + + G  VG AYR  E E+GWS V+ QVD FL +F  Y  S +P+ L +   +LG+ +A+
Sbjct:  228 EVFALSNTEDNESLQGLVRSRGSLWIGKFGLPSPPAGEDESELVDIWPRKVARFVEDGGGGSFPLEGKPNTFGSLAASKEGSASRGGAVECARRAHGLIAQALGELRPHVPTPPKEXXXXXVDNNPASPSLSSPSL-KPGRGGKAGGSVVGSGGVSSGSPKAAAASPGKVKPVPMSAGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCRLRGREASNGVEDMDDXXXXXXXXGGAESRGDNAGGP-------------------AGAGEMTVAAVRESLLSNPSEERKPGPSPQ--EWEVAVKKFISHVESLPPGTEQEELSLMFAAALDPTLVRLRMANTKLVGLAEACLPQGEGEAPGDDDGEXXXXXXXXXXXXXGAKKSG--------FKVRLELEAPEEGAPPPDGIAGVLRAVAGAAAAVEAAARVEACVICGGDTLGGLGEIKRDYKRCLPPGPREPLQFIIAEEEARVQGYVGAHEQVLREAGETVHEVGPEVGRAYRAVEREAGWSGVRDQVDAFLIEFEDYCASLMPAPLSTSRSILGVDLAA 774
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9937.24049.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G3K8_ECTSI1.280e-9545.93Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig9937contigP-canaliculata_contig9937:1047..4116 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-19_005040.1
Exons2
Model size2641
Cds size1065
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig9937.24049.1prot_P-canaliculata_contig9937.24049.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig9937 2241..3305 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817353.825846-UTR-P-canaliculata_contig9937:1046..12891622817353.825846-UTR-P-canaliculata_contig9937:1046..1289Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9937 1047..1289 +
1693495242.4562416-UTR-P-canaliculata_contig9937:1046..12891693495242.4562416-UTR-P-canaliculata_contig9937:1046..1289Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9937 1047..1289 +
1622817353.838815-UTR-P-canaliculata_contig9937:1718..22401622817353.838815-UTR-P-canaliculata_contig9937:1718..2240Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9937 1719..2240 +
1693495242.4688504-UTR-P-canaliculata_contig9937:1718..22401693495242.4688504-UTR-P-canaliculata_contig9937:1718..2240Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9937 1719..2240 +
1622817353.863961-UTR-P-canaliculata_contig9937:3305..41161622817353.863961-UTR-P-canaliculata_contig9937:3305..4116Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9937 3306..4116 +
1693495242.4877837-UTR-P-canaliculata_contig9937:3305..41161693495242.4877837-UTR-P-canaliculata_contig9937:3305..4116Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9937 3306..4116 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817353.8525906-CDS-P-canaliculata_contig9937:2240..33051622817353.8525906-CDS-P-canaliculata_contig9937:2240..3305Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9937 2241..3305 +
1693495242.47829-CDS-P-canaliculata_contig9937:2240..33051693495242.47829-CDS-P-canaliculata_contig9937:2240..3305Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9937 2241..3305 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig9937.24049.1

>prot_P-canaliculata_contig9937.24049.1 ID=prot_P-canaliculata_contig9937.24049.1|Name=mRNA_P-canaliculata_contig9937.24049.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=355bp
MSSYKRRSLRDDGGLEAEEEEGDEEGSRAGKKRGKRGVVPEAEDEADEDP
EGARRGAVGVGAGEMTVAAVRASLLRNRADEGPKPQGEEWEDTVKRFIKH
VESLPAGTTQEELSLIFAAALDPTLVRMRAANASLIGLADVSASRELSIH
DDDDDDDEDDEGGHDGYGGAWSATRGSRGRGRFKVRLELDATDGDEQPPE
GIAGLLRAVAEARAAVEATARAEACVAAAGDTLGGLQELKSDYKRSLPTG
PREPIQLIIAEEQERVLGYKSAHEIIVRQRIEELCDAGSRVGEAYRTGEA
ESGWSSVKSQVDKFLRKFTKYSVSRLPSLGSIPDLLGLGVASGDARGSAA
ASRV*
back to top

mRNA from alignment at P-canaliculata_contig9937:1047..4116+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig9937.24049.1 ID=mRNA_P-canaliculata_contig9937.24049.1|Name=mRNA_P-canaliculata_contig9937.24049.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=3070bp|location=Sequence derived from alignment at P-canaliculata_contig9937:1047..4116+ (Pelvetia canaliculata dioecious)
CAGGCGGATGTCATTGGTCAAGCTCTGGGTTGCGTCGATCCGTTCGAGAA
TGAAGGCACGCCCGATGCCCGCGAGGTGACCGCGAATGGGGTGTCTCGGG
AGGGAGGAGGTGGAGCCCAAGAGTGCCTCGCCCTGGGGAACACGGACAAC
AACGAGTCCGTCCAAGGGCTCGTGCGGAGCGCGGGGTGTCTGTGGCTGGG
TGTCTTCGGGCTGCCACCGGTGCCGTCGGGAGAGGAAGAGGAGGTGAGGT
GGGAGGGGGGAAATAGCGACTACGACTCCTTTGATGAATGTGGTGATGCG
CCTCATCTTGCCGATGGTAAGTCGTCCGTTAGATGCTGTCGGTAAACAGT
AAGCCGCACCAAAAACGCGTTGTCTTGAGGGCTATACCTCTATTATAGTA
TGACATAGTACATTAAGGTAGCACGGTGAGTTCCACAAGGTATACAAAGA
CATAAAAAGTACCGCCATTTATAACATAGTACATTAAGGTAGCACGGTGA
GTGCCACAAGGTATACAAAGACATAAAAAGTACCGCCATTTATAGCAGTA
CAAAAGTCTCCGGCTTTGACGCCTGTCGGTCCTGGAATCCCGCGATTAGC
GGTCAGCGGTCAAGGTCGGTCTCCCCTTATCGGTGTCCCCCGCCTGTTTG
TTTTGTGAACGCCCGCGAACAGATCGTGGATCTCTGGCCGAGGAAGGTTG
CGCGCTTCACCGAAGACGGAGTGGCGGGCGTCCTTGCCCTTGAAGGGAAA
CCAGACGCGACCGGACCGCTCGCGGCGCCCAAGGGAGAGGGGGGCGAGAG
CGACACGATAGCGGGGGCTTGCGAAGCGTACAACTTGATAGCGCGGGCAC
TGGCAGAGCTCCGACCGTTTGTGCCCGCGCCCCCAGACCCTTACGAGGCG
GCCCGAACCCCGACGGCGCCAAACCGGTCGTCCGTGCTCTACGCGAAAAA
ATGGCCCACGGGGGAGGCGTCGGATGCGGTGGACACCGCGACGAACGGGC
ACAGTGGGAAGACGCTGTCTCCAGACGACAGTGAGGTGGAGGAAGACGGG
GAAGAGGAGGAGGAGGAAGAGGAGGCATTTGTTGGTGACAAGCGGCCCGT
AACGGCCAGGGCGCTCTCGACGCGTTCGGGAGGGCGAAAATCAGCGCCAG
CCCTTGGGAAACGGCGCGCCGGTCGAAGGAGGCGCAGGGTGACCATGTCC
TCGTACAAGCGACGATCCCTCCGAGACGATGGCGGACTCGAGGCAGAGGA
GGAAGAAGGAGACGAAGAGGGTTCTCGTGCGGGGAAGAAGCGGGGAAAGC
GAGGGGTGGTCCCGGAGGCGGAAGACGAAGCGGACGAAGACCCCGAGGGG
GCCAGGCGGGGTGCCGTCGGGGTGGGAGCGGGTGAGATGACCGTCGCGGC
CGTTCGCGCGTCCCTGCTCAGAAATCGAGCCGACGAGGGCCCGAAACCCC
AGGGGGAAGAGTGGGAGGATACCGTGAAGAGGTTCATCAAGCACGTTGAG
AGCCTTCCCGCCGGGACCACCCAGGAGGAGCTCTCCCTCATATTCGCCGC
GGCGCTTGACCCGACCCTCGTGCGCATGCGTGCCGCGAATGCCTCGCTCA
TCGGCCTCGCGGACGTGTCTGCGTCGCGGGAGTTGAGCATTCACGACGAT
GATGATGACGACGATGAAGATGACGAAGGCGGTCATGACGGTTACGGAGG
TGCCTGGAGCGCGACGAGGGGCAGCCGCGGCCGCGGACGCTTCAAGGTCC
GCCTGGAGCTCGACGCGACGGATGGGGATGAGCAGCCGCCAGAGGGGATT
GCGGGCTTACTCCGAGCTGTTGCCGAGGCGAGGGCGGCGGTCGAGGCGAC
CGCGAGAGCCGAGGCGTGCGTCGCTGCTGCGGGAGATACCCTTGGAGGCC
TGCAGGAGCTCAAGTCCGACTACAAGAGGTCCTTACCCACGGGCCCGCGC
GAGCCCATCCAACTCATCATTGCGGAGGAGCAGGAAAGGGTTTTGGGCTA
CAAGAGCGCGCACGAGATCATCGTACGCCAGCGCATAGAAGAGCTGTGTG
ATGCCGGGTCGCGGGTCGGAGAGGCGTACCGTACGGGGGAAGCAGAATCT
GGTTGGAGCTCCGTGAAGTCACAGGTGGATAAATTCTTGCGCAAGTTCAC
CAAGTACAGCGTTTCCCGCCTCCCGAGCCTCGGGTCGATACCGGACCTGC
TGGGGCTAGGGGTTGCTAGTGGCGACGCCAGAGGCTCAGCAGCAGCATCG
AGGGTATAGAGAGACCGCGAGGCCGTGCTTTTGGTCCCGCGTTGTTTTTG
TTGGGGAGGGAGAAGAAGGGAGACAGGGGACAGGGGACGACGTGTCTGCA
TTGATAATTGTCATGACGCGACTCTCGCAAACCTTGTGCCAGAGAGCCCG
GCGGGCACCGTCAAAGTTGCGTGTGTGTGAAATCATAAGCGCTGTGAGTG
TCGTGATTAAAAAAGTTAACATTAAAAATAAAAGCTTTTGCGTCTCGGGA
GTGTTCCAAGCAGCAGACCTCGCTCGCATCCCGACGGAACTCCCCTGCAA
GGACGGAATGTAACCCACGCTTCGGAGAGCCGCCCTCCGCCTGAAAGGAA
TACATGGCTTGACATGACAGCATGGGTTACCGTTGCGAACGAGACGGGCG
GGGACCGGTGCACAAGCTTTTCCTTCTTTTTAAGTTGTTCTTTGTTGGGT
GTTCGTGGGAGAGCGACGGGTGTTGTAAAATACTAGCATTTTGTGTGGTC
CACGAGGGAGCGGAGCGGACGCGTGGAGAGCTTTCCTCTGTTTTTGCATT
TTTCTTGCGATGAAATAACTCAACGAATATGTAGCCGAGGTCGAATTTTC
GATTCAGAGGTGTACAAAACAAGACTAAAAAAGACGGGCGACAGATTTAC
GCGGCTTCTGCATCTTTCGCTCTGAGTTTGCCAGTATTTTTGTGGTCGTC
GTCTGGGAAGGGAGAGACATGAAGAGCGCCGGGCCGAGAGGGCGAGAGGA
GCTAGGAGGGAGAGGGGGGGTTGGCGAGGAATGTCGGTAAGATACAAAGG
TGTGGTAGAATCAACAACAC
back to top

Coding sequence (CDS) from alignment at P-canaliculata_contig9937:1047..4116+

>mRNA_P-canaliculata_contig9937.24049.1 ID=mRNA_P-canaliculata_contig9937.24049.1|Name=mRNA_P-canaliculata_contig9937.24049.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=2130bp|location=Sequence derived from alignment at P-canaliculata_contig9937:1047..4116+ (Pelvetia canaliculata dioecious)
ATGTCCTCGTACAAGCGACGATCCCTCCGAGACGATGGCGGACTCGAGGC
AGAGGAGGAAGAAGGAGACGAAGAGGGTTCTCGTGCGGGGAAGAAGCGGG
GAAAGCGAGGGGTGGTCCCGGAGGCGGAAGACGAAGCGGACGAAGACCCC
GAGGGGGCCAGGCGGGGTGCCGTCGGGGTGGGAGCGGGTGAGATGACCGT
CGCGGCCGTTCGCGCGTCCCTGCTCAGAAATCGAGCCGACGAGGGCCCGA
AACCCCAGGGGGAAGAGTGGGAGGATACCGTGAAGAGGTTCATCAAGCAC
GTTGAGAGCCTTCCCGCCGGGACCACCCAGGAGGAGCTCTCCCTCATATT
CGCCGCGGCGCTTGACCCGACCCTCGTGCGCATGCGTGCCGCGAATGCCT
CGCTCATCGGCCTCGCGGACGTGTCTGCGTCGCGGGAGTTGAGCATTCAC
GACGATGATGATGACGACGATGAAGATGACGAAGGCGGTCATGACGGTTA
CGGAGGTGCCTGGAGCGCGACGAGGGGCAGCCGCGGCCGCGGACGCTTCA
AGGTCCGCCTGGAGCTCGACGCGACGGATGGGGATGAGCAGCCGCCAGAG
GGGATTGCGGGCTTACTCCGAGCTGTTGCCGAGGCGAGGGCGGCGGTCGA
GGCGACCGCGAGAGCCGAGGCGTGCGTCGCTGCTGCGGGAGATACCCTTG
GAGGCCTGCAGGAGCTCAAGTCCGACTACAAGAGGTCCTTACCCACGGGC
CCGCGCGAGCCCATCCAACTCATCATTGCGGAGGAGCAGGAAAGGGTTTT
GGGCTACAAGAGCGCGCACGAGATCATCGTACGCCAGCGCATAGAAGAGC
TGTGTGATGCCGGGTCGCGGGTCGGAGAGGCGTACCGTACGGGGGAAGCA
GAATCTGGTTGGAGCTCCGTGAAGTCACAGGTGGATAAATTCTTGCGCAA
GTTCACCAAGTACAGCGTTTCCCGCCTCCCGAGCCTCGGGTCGATACCGG
ACCTGCTGGGGCTAGGGGTTGCTAGTGGCGACGCCAGAGGCTCAGCAGCA
GCATCGAGGGTATAGATGTCCTCGTACAAGCGACGATCCCTCCGAGACGA
TGGCGGACTCGAGGCAGAGGAGGAAGAAGGAGACGAAGAGGGTTCTCGTG
CGGGGAAGAAGCGGGGAAAGCGAGGGGTGGTCCCGGAGGCGGAAGACGAA
GCGGACGAAGACCCCGAGGGGGCCAGGCGGGGTGCCGTCGGGGTGGGAGC
GGGTGAGATGACCGTCGCGGCCGTTCGCGCGTCCCTGCTCAGAAATCGAG
CCGACGAGGGCCCGAAACCCCAGGGGGAAGAGTGGGAGGATACCGTGAAG
AGGTTCATCAAGCACGTTGAGAGCCTTCCCGCCGGGACCACCCAGGAGGA
GCTCTCCCTCATATTCGCCGCGGCGCTTGACCCGACCCTCGTGCGCATGC
GTGCCGCGAATGCCTCGCTCATCGGCCTCGCGGACGTGTCTGCGTCGCGG
GAGTTGAGCATTCACGACGATGATGATGACGACGATGAAGATGACGAAGG
CGGTCATGACGGTTACGGAGGTGCCTGGAGCGCGACGAGGGGCAGCCGCG
GCCGCGGACGCTTCAAGGTCCGCCTGGAGCTCGACGCGACGGATGGGGAT
GAGCAGCCGCCAGAGGGGATTGCGGGCTTACTCCGAGCTGTTGCCGAGGC
GAGGGCGGCGGTCGAGGCGACCGCGAGAGCCGAGGCGTGCGTCGCTGCTG
CGGGAGATACCCTTGGAGGCCTGCAGGAGCTCAAGTCCGACTACAAGAGG
TCCTTACCCACGGGCCCGCGCGAGCCCATCCAACTCATCATTGCGGAGGA
GCAGGAAAGGGTTTTGGGCTACAAGAGCGCGCACGAGATCATCGTACGCC
AGCGCATAGAAGAGCTGTGTGATGCCGGGTCGCGGGTCGGAGAGGCGTAC
CGTACGGGGGAAGCAGAATCTGGTTGGAGCTCCGTGAAGTCACAGGTGGA
TAAATTCTTGCGCAAGTTCACCAAGTACAGCGTTTCCCGCCTCCCGAGCC
TCGGGTCGATACCGGACCTGCTGGGGCTAGGGGTTGCTAGTGGCGACGCC
AGAGGCTCAGCAGCAGCATCGAGGGTATAG
back to top