mRNA_P-canaliculata_contig99366.24048.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig99366.24048.1
Unique NamemRNA_P-canaliculata_contig99366.24048.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig99366.24048.1 vs. uniprot
Match: A0A2G3BUH6_CAPCH (Uncharacterized protein n=1 Tax=Capsicum chinense TaxID=80379 RepID=A0A2G3BUH6_CAPCH)

HSP 1 Score: 105 bits (263), Expect = 8.550e-25
Identity = 65/118 (55.08%), Postives = 70/118 (59.32%), Query Frame = 3
Query:  132 LLPFSTTGLSPPLVQLSTASSNFRNPSDCPTTP*TEIYGLGCFRFARRY*GNRFCFLFLQLLRCFSSLGSLAPAYIFSRSFSWVAPSRTLSDQCLFPTPRDISSVTTSFFAFVYLGIH 485
            L+  S TGLSP  VQ S   +   N   C   P    +GLGC  FARRY GNRFCFLFL LLRCFSS G L PA+ FS S S   P R   D CLF TPR ISS+TT F     LGIH
Sbjct:    9 LVMLSATGLSPSRVQHSGCFAKQHNA--CIALPQPRFHGLGCSHFARRYYGNRFCFLFLWLLRCFSSPGCLLPAHGFSSS-SKGCPIRESPDLCLFSTPRSISSITTPFLVSGCLGIH 123          
BLAST of mRNA_P-canaliculata_contig99366.24048.1 vs. uniprot
Match: B0MI66_ANACD (Uncharacterized protein (Fragment) n=1 Tax=Anaerostipes caccae (strain DSM 14662 / CCUG 47493 / JCM 13470 / NCIMB 13811 / L1-92) TaxID=411490 RepID=B0MI66_ANACD)

HSP 1 Score: 99.4 bits (246), Expect = 9.080e-24
Identity = 60/111 (54.05%), Postives = 74/111 (66.67%), Query Frame = 1
Query:    1 GVLFTFPSRYYSLSVTH*YLALRGGPR*FTRNSTGSVLLGIQSGYFRFRLQDFHLLWCSFQLLRLTFVIRPTVPL-PHKPKFMV*AVSASLAATKEIAFAFSSSSY*DVSV 330
            GVLFTFPS+YY+LSVT  YLALRGGPR F +  +  V+L I  GYFR R++ FH LW +F   R   +  PT+   P   + +V A+S SLAAT EI  +FSSS Y DVSV
Sbjct:   16 GVLFTFPSQYYALSVTKEYLALRGGPRSFPQGFSCLVVLWILLGYFRLRIRGFHPLWPAFPG-RSPVLHNPTLQSEPQDARILVWALSISLAATLEIEVSFSSSGYLDVSV 125          
BLAST of mRNA_P-canaliculata_contig99366.24048.1 vs. uniprot
Match: A4QMB9_PINKO (ORF124 n=1 Tax=Pinus koraiensis TaxID=88728 RepID=A4QMB9_PINKO)

HSP 1 Score: 95.1 bits (235), Expect = 3.210e-22
Identity = 50/80 (62.50%), Postives = 60/80 (75.00%), Query Frame = 2
Query:  248 FRLFPLRSPLLRKSLLLSLPPATKMFQFAGFARSCLYIQQVVQLGCPISDTLGSMLVSNSPRHFVGHHVLLRLCVPRYPP 487
            FRL P RSPLLR+SLLLS+P ATKMFQFA  + +C +IQQ ++ G   S   GSML+ NSP+HFV +H L RL VPRYPP
Sbjct:   46 FRLLPFRSPLLRESLLLSIPLATKMFQFARLSLACPWIQQQLK-GLTYSGISGSMLIFNSPKHFVAYHALPRLWVPRYPP 124          
BLAST of mRNA_P-canaliculata_contig99366.24048.1 vs. uniprot
Match: A0A0V0GQ11_SOLCH (Putative ovule protein (Fragment) n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0GQ11_SOLCH)

HSP 1 Score: 89.7 bits (221), Expect = 1.180e-19
Identity = 67/161 (41.61%), Postives = 81/161 (50.31%), Query Frame = 1
Query:    1 GVLFTFPSRYYSLSVTH*YLALRGGPR*FTRNSTGSVLLGIQSGYFRFRLQDFHLLWCSFQLLRLTFVIR---PTVPLPHKPKFMV*AVSASLAATK-----------EIAFAFSSSSY*DVSVRWVRSLLPIYS-AGRSVGLPHLGHSRINACFQLPETF 438
            G    FP    SLSVT  YLALRGGPR F R+ T   LLGIQS Y  F LQDF+LLW SFQL RLTF++    PT P+P +       + +SL A +           ++   FSS          +RSL P Y  +G+  GLPH   S        PE F
Sbjct:    1 GFFSLFPRGTCSLSVTQEYLALRGGPRXFNRDFTCPDLLGIQSTYSGFXLQDFYLLWYSFQLFRLTFLVSFDCPTTPIPLRI-----GLGSSLFARRYSGNRFFFLFLQLLRCFSS----------LRSLFPAYIFSGQYAGLPHSDTSGSMLASSSPERF 146          
BLAST of mRNA_P-canaliculata_contig99366.24048.1 vs. uniprot
Match: M1DI68_SOLTU (Uncharacterized protein n=2 Tax=Solanum tuberosum TaxID=4113 RepID=M1DI68_SOLTU)

HSP 1 Score: 91.3 bits (225), Expect = 2.320e-19
Identity = 49/80 (61.25%), Postives = 58/80 (72.50%), Query Frame = 2
Query:  248 FRLFPLRSPLLRKSLLLSLPPATKMFQFAGFARSCLYIQQVVQLGCPISDTLGSMLVSNSPRHFVGHHVLLRLCVPRYPP 487
            FRL P RSPLLR+SLLLS P ATKMFQFA  + +C +IQQ  +   P S   GSML+ NSP+HFV ++ L RL VPRYPP
Sbjct:   48 FRLLPFRSPLLRESLLLSFPLATKMFQFARLSLACPWIQQQFER-LPYSGISGSMLIFNSPKHFVDYYALPRLWVPRYPP 126          
BLAST of mRNA_P-canaliculata_contig99366.24048.1 vs. uniprot
Match: A0A5K1HUG9_9MAGN (Uncharacterized protein (Fragment) n=1 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K1HUG9_9MAGN)

HSP 1 Score: 86.7 bits (213), Expect = 3.380e-19
Identity = 48/80 (60.00%), Postives = 56/80 (70.00%), Query Frame = 2
Query:  248 FRLFPLRSPLLRKSLLLSLPPATKMFQFAGFARSCLYIQQVVQLGCPISDTLGSMLVSNSPRHFVGHHVLLRLCVPRYPP 487
            FRL P RSPLLR+SLLLS P ATKMFQFA  + +C +IQQ  +     S   GSML+ NSP+HFV  + L RL VPRYPP
Sbjct:   22 FRLLPFRSPLLRESLLLSFPLATKMFQFARLSLACPWIQQQFER-LTYSGISGSMLIFNSPKHFVACYALPRLWVPRYPP 100          
BLAST of mRNA_P-canaliculata_contig99366.24048.1 vs. uniprot
Match: A0A5N6P624_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6P624_9ASTR)

HSP 1 Score: 87.8 bits (216), Expect = 3.780e-19
Identity = 48/80 (60.00%), Postives = 57/80 (71.25%), Query Frame = 2
Query:  248 FRLFPLRSPLLRKSLLLSLPPATKMFQFAGFARSCLYIQQVVQLGCPISDTLGSMLVSNSPRHFVGHHVLLRLCVPRYPP 487
            FRL P RSPLL +SLLLS P ATKMFQFA F+ +C +IQQ  +     S   GSML+ NSP+HFV ++ L RL VPRYPP
Sbjct:   65 FRLLPFRSPLLWESLLLSFPLATKMFQFARFSLACPWIQQQFER-LTYSGISGSMLIFNSPKHFVAYYALPRLWVPRYPP 143          
BLAST of mRNA_P-canaliculata_contig99366.24048.1 vs. uniprot
Match: A0A3P6DF78_BRACM (Uncharacterized protein n=1 Tax=Brassica campestris TaxID=3711 RepID=A0A3P6DF78_BRACM)

HSP 1 Score: 85.9 bits (211), Expect = 6.950e-19
Identity = 47/80 (58.75%), Postives = 56/80 (70.00%), Query Frame = 2
Query:  248 FRLFPLRSPLLRKSLLLSLPPATKMFQFAGFARSCLYIQQVVQLGCPISDTLGSMLVSNSPRHFVGHHVLLRLCVPRYPP 487
            FRL P RSPLLR+SLLLS P ATKMFQFA  + +C +IQQ  +     S   GS L+ NSP+HFV ++ L RL VPRYPP
Sbjct:   23 FRLLPFRSPLLRESLLLSFPLATKMFQFARLSLACPWIQQQFKR-LTYSGISGSTLIFNSPKHFVAYYALPRLWVPRYPP 101          
BLAST of mRNA_P-canaliculata_contig99366.24048.1 vs. uniprot
Match: A0A5N6L973_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6L973_9ASTR)

HSP 1 Score: 88.6 bits (218), Expect = 8.770e-19
Identity = 48/80 (60.00%), Postives = 57/80 (71.25%), Query Frame = 2
Query:  248 FRLFPLRSPLLRKSLLLSLPPATKMFQFAGFARSCLYIQQVVQLGCPISDTLGSMLVSNSPRHFVGHHVLLRLCVPRYPP 487
            FRL P RSPLLR+SLLLS P ATKMFQFA  + +C +IQQ  +     S   GSML+ NSP+HFV ++ L RL VPRYPP
Sbjct:   67 FRLLPFRSPLLRESLLLSFPLATKMFQFARLSLACPWIQQQFER-LTYSGISGSMLIFNSPKHFVAYYALPRLWVPRYPP 145          
BLAST of mRNA_P-canaliculata_contig99366.24048.1 vs. uniprot
Match: A0A3P6D603_BRACM (Uncharacterized protein n=1 Tax=Brassica campestris TaxID=3711 RepID=A0A3P6D603_BRACM)

HSP 1 Score: 85.1 bits (209), Expect = 1.310e-18
Identity = 48/89 (53.93%), Postives = 59/89 (66.29%), Query Frame = 2
Query:  221 HYPINRNLWFRLFPLRSPLLRKSLLLSLPPATKMFQFAGFARSCLYIQQVVQLGCPISDTLGSMLVSNSPRHFVGHHVLLRLCVPRYPP 487
            H  +   L +RL P RSPLLR+SLLLS P ATKMFQFA  + +C +IQQ  +     S   GS L+ NSP+HFV ++ L RL VPRYPP
Sbjct:   12 HPSLTVLLRYRLLPFRSPLLRESLLLSFPLATKMFQFARLSLACPWIQQQFKR-LTYSGISGSTLIFNSPKHFVAYYALPRLWVPRYPP 99          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig99366.24048.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2G3BUH6_CAPCH8.550e-2555.08Uncharacterized protein n=1 Tax=Capsicum chinense ... [more]
B0MI66_ANACD9.080e-2454.05Uncharacterized protein (Fragment) n=1 Tax=Anaeros... [more]
A4QMB9_PINKO3.210e-2262.50ORF124 n=1 Tax=Pinus koraiensis TaxID=88728 RepID=... [more]
A0A0V0GQ11_SOLCH1.180e-1941.61Putative ovule protein (Fragment) n=1 Tax=Solanum ... [more]
M1DI68_SOLTU2.320e-1961.25Uncharacterized protein n=2 Tax=Solanum tuberosum ... [more]
A0A5K1HUG9_9MAGN3.380e-1960.00Uncharacterized protein (Fragment) n=1 Tax=Nymphae... [more]
A0A5N6P624_9ASTR3.780e-1960.00Uncharacterized protein n=1 Tax=Mikania micrantha ... [more]
A0A3P6DF78_BRACM6.950e-1958.75Uncharacterized protein n=1 Tax=Brassica campestri... [more]
A0A5N6L973_9ASTR8.770e-1960.00Uncharacterized protein n=1 Tax=Mikania micrantha ... [more]
A0A3P6D603_BRACM1.310e-1853.93Uncharacterized protein n=1 Tax=Brassica campestri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig99366contigP-canaliculata_contig99366:56..542 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size487
Cds size168
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817353.6872797-UTR-P-canaliculata_contig99366:55..3741622817353.6872797-UTR-P-canaliculata_contig99366:55..374Pelvetia canaliculata dioeciousUTRP-canaliculata_contig99366 56..374 +
1693495242.356563-UTR-P-canaliculata_contig99366:55..3741693495242.356563-UTR-P-canaliculata_contig99366:55..374Pelvetia canaliculata dioeciousUTRP-canaliculata_contig99366 56..374 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817353.6980164-CDS-P-canaliculata_contig99366:374..5421622817353.6980164-CDS-P-canaliculata_contig99366:374..542Pelvetia canaliculata dioeciousCDSP-canaliculata_contig99366 375..542 +
1693495242.366852-CDS-P-canaliculata_contig99366:374..5421693495242.366852-CDS-P-canaliculata_contig99366:374..542Pelvetia canaliculata dioeciousCDSP-canaliculata_contig99366 375..542 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig99366.24048.1prot_P-canaliculata_contig99366.24048.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig99366 375..542 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig99366.24048.1

>prot_P-canaliculata_contig99366.24048.1 ID=prot_P-canaliculata_contig99366.24048.1|Name=mRNA_P-canaliculata_contig99366.24048.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=56bp
MFQFAGFARSCLYIQQVVQLGCPISDTLGSMLVSNSPRHFVGHHVLLRLC
VPRYPP
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mRNA from alignment at P-canaliculata_contig99366:56..542+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig99366.24048.1 ID=mRNA_P-canaliculata_contig99366.24048.1|Name=mRNA_P-canaliculata_contig99366.24048.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=487bp|location=Sequence derived from alignment at P-canaliculata_contig99366:56..542+ (Pelvetia canaliculata dioecious)
GGGGTTCTTTTCACCTTTCCCTCGCGGTACTATTCGCTATCGGTCACACA TTAGTATTTAGCCTTACGAGGTGGTCCTCGCTGATTCACACGGAATTCCA CGGGCTCCGTGCTACTCGGGATTCAGTCTGGTTACTTCCGTTTTCGACTA CAGGACTTTCACCTCCTCTGGTGCAGCTTTCAACTGCTTCGTCTAACTTT CGTAATCCGTCCGACTGTCCCACTACCCCATAAACCGAAATTTATGGTTT AGGCTGTTTCCGCTTCGCTCGCCGCTACTAAGGAAATCGCTTTTGCTTTC TCTTCCTCCAGCTACTAAGATGTTTCAGTTCGCTGGGTTCGCTCGCTCCT GCCTATATATTCAGCAGGTCGTTCAGTTGGGTTGCCCCATCTCGGACACT CTCGGATCAATGCTTGTTTCCAACTCCCCGAGACATTTCGTCGGTCACCA CGTCCTTCTTCGCCTTTGTGTACCTAGGTATCCACCG
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Coding sequence (CDS) from alignment at P-canaliculata_contig99366:56..542+

>mRNA_P-canaliculata_contig99366.24048.1 ID=mRNA_P-canaliculata_contig99366.24048.1|Name=mRNA_P-canaliculata_contig99366.24048.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=336bp|location=Sequence derived from alignment at P-canaliculata_contig99366:56..542+ (Pelvetia canaliculata dioecious)
ATGTTTCAGTTCGCTGGGTTCGCTCGCTCCTGCCTATATATTCAGCAGGT
CGTTCAGTTGGGTTGCCCCATCTCGGACACTCTCGGATCAATGCTTGTTT
CCAACTCCCCGAGACATTTCGTCGGTCACCACGTCCTTCTTCGCCTTTGT
GTACCTAGGTATCCACCGATGTTTCAGTTCGCTGGGTTCGCTCGCTCCTG
CCTATATATTCAGCAGGTCGTTCAGTTGGGTTGCCCCATCTCGGACACTC
TCGGATCAATGCTTGTTTCCAACTCCCCGAGACATTTCGTCGGTCACCAC
GTCCTTCTTCGCCTTTGTGTACCTAGGTATCCACCG
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