mRNA_P-canaliculata_contig99303.24046.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig99303.24046.1
Unique NamemRNA_P-canaliculata_contig99303.24046.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig99303.24046.1 vs. uniprot
Match: UPI00167692BF (YdbL family protein n=1 Tax=Litorimonas cladophorae TaxID=1220491 RepID=UPI00167692BF)

HSP 1 Score: 140 bits (352), Expect = 2.310e-40
Identity = 77/129 (59.69%), Postives = 97/129 (75.19%), Query Frame = 1
Query:    1 MATLKTLLGGIAALSLLAGGTLLMNASGANAAYAQTGSAKATVDAAVSRGEVGEQINGYLGVVNGASPSADVRNAMAEINIARKSVYSRLAAQQNVAIDVVAQITGEKQIKKARSGHYVKDATGVWKQK 387
            MATLK + G +AAL+L+AGG   ++ + A A  AQT  +KA VDAA+ RGE+GEQINGYL VV+GASPS  VR +MA+INI RK+VY+  A  QNV   + AQ+TGEKQI KA  G Y+KDA+GVWK+K
Sbjct:    1 MATLKKIFGSVAALALVAGGITAVSLAYAPATQAQTSDSKAVVDAAIKRGEIGEQINGYLDVVDGASPSEKVRASMADINIQRKAVYTNAARAQNVQTAIFAQLTGEKQILKAAPGTYIKDASGVWKKK 129          
BLAST of mRNA_P-canaliculata_contig99303.24046.1 vs. uniprot
Match: UPI00040999AB (YdbL family protein n=1 Tax=Hellea balneolensis TaxID=287478 RepID=UPI00040999AB)

HSP 1 Score: 100 bits (250), Expect = 6.840e-25
Identity = 59/125 (47.20%), Postives = 80/125 (64.00%), Query Frame = 1
Query:   13 KTLLGGIAALSLLAGGTLLMNASGANAAYAQTGSAKATVDAAVSRGEVGEQINGYLGVVNGASPSADVRNAMAEINIARKSVYSRLAAQQNVAIDVVAQITGEKQIKKARSGHYVKDATGVWKQK 387
            KT    I+A +LLAGGT++++  G   A AQ  SAKA  D A ++G +GE + GYL      + SA  R AM EINI RKS+Y++ A  +N+ ++VVA I GEKQI KA SG  V D++G W+ K
Sbjct:    5 KTFFTAISAFALLAGGTMVISTLGGTEATAQAQSAKAIADNAKTKGIIGETVAGYLAETGNGALSAAERAAMNEINIGRKSIYTKKARAENLQVEVVAAIFGEKQIAKAASGEKVMDSSGAWRTK 129          
BLAST of mRNA_P-canaliculata_contig99303.24046.1 vs. uniprot
Match: A0A848V6D0_9PROT (YdbL family protein n=1 Tax=Hellea sp. TaxID=2715692 RepID=A0A848V6D0_9PROT)

HSP 1 Score: 99.8 bits (247), Expect = 1.940e-24
Identity = 59/124 (47.58%), Postives = 77/124 (62.10%), Query Frame = 1
Query:   13 KTLLGGIAALSLLAGGTLLMNASGANAAYAQTGSAKATVDAAVSRGEVGEQINGYLGVVNGASPSADVRNAMAEINIARKSVYSRLAAQQNVAIDVVAQITGEKQIKKARSGHYVKDATGVWKQ 384
            KT+L  +    +LAGG  +        AYAQT  AK  VD A +   VGE ++GYL VVN ASPS +V NAM EINI RK++Y++LA +QNV I+V+A +TGEK I  A  G  + +  G W Q
Sbjct:    4 KTILSSVFGALILAGGAYVAMPHLTPEAYAQTADAKRIVDDAKTAKLVGETVSGYLAVVNAASPSREVLNAMNEINIRRKNLYTKLAREQNVQIEVIAALTGEKVIANANRGEMIMNKDGRWTQ 127          
BLAST of mRNA_P-canaliculata_contig99303.24046.1 vs. uniprot
Match: A0A7C5R874_9PROT (DUF1318 domain-containing protein n=1 Tax=Hellea balneolensis TaxID=287478 RepID=A0A7C5R874_9PROT)

HSP 1 Score: 87.8 bits (216), Expect = 6.060e-20
Identity = 52/98 (53.06%), Postives = 67/98 (68.37%), Query Frame = 1
Query:   94 AYAQTGSAKATVDAAVSRGEVGEQINGYLGVVNGASPSADVRNAMAEINIARKSVYSRLAAQQNVAIDVVAQITGEKQIKKARSGHYVKDATGVWKQK 387
            AYAQT +AK  VDAA ++G VGE I GYL VVNG S SA+++ A+ EINI RKSVY+++A +Q V +   A++ GEK I KA+ G  V    GVW  K
Sbjct:   16 AYAQTMTAKQIVDAAKAQGLVGETIAGYLAVVNG-SASAEIQAAVNEINIRRKSVYTKMAREQGVQVAEAARVVGEKLIAKAKPGEKVMLENGVWTTK 112          
BLAST of mRNA_P-canaliculata_contig99303.24046.1 vs. uniprot
Match: A0A350ZV68_9PROT (DUF1318 domain-containing protein n=1 Tax=Hyphomonas sp. TaxID=87 RepID=A0A350ZV68_9PROT)

HSP 1 Score: 87.0 bits (214), Expect = 1.320e-19
Identity = 53/112 (47.32%), Postives = 72/112 (64.29%), Query Frame = 1
Query:   61 TLLMNASGANAAYAQTGSAKA---TVDAAVSRGEVGEQINGYLGVVNGASPSADVRNAMAEINIARKSVYSRLAAQQNVAIDVVAQITGEKQIKKARSGHYVKDATGVWKQK 387
            T+LM+A  A AA A   +A A    +DAA + GE+GE+I+GYLGVV  ASP   +   + +IN  R++VY + A   N  + +VAQ+TGEKQI K  +G Y  DA+G WKQK
Sbjct:    6 TILMSALLALAALAFAPNASAGDPQIDAARAAGEIGERIDGYLGVVT-ASPDPALVRKVQDINNRRRAVYEQTARDNNTTVQIVAQLTGEKQIAKLEAGQYYMDASGSWKQK 116          
BLAST of mRNA_P-canaliculata_contig99303.24046.1 vs. uniprot
Match: A0A0F2RC80_9PROT (Uncharacterized protein n=1 Tax=Hyphomonas sp. BRH_c22 TaxID=1629710 RepID=A0A0F2RC80_9PROT)

HSP 1 Score: 82.4 bits (202), Expect = 8.290e-18
Identity = 45/87 (51.72%), Postives = 60/87 (68.97%), Query Frame = 1
Query:  127 VDAAVSRGEVGEQINGYLGVVNGASPSADVRNAMAEINIARKSVYSRLAAQQNVAIDVVAQITGEKQIKKARSGHYVKDATGVWKQK 387
            ++AA+S GEVGE+I+GYLGVV  A P A VR    EIN  R+++Y +L+ Q    +  VA++TGEKQI +A +G Y  D TG WKQK
Sbjct:   31 LEAAISAGEVGERIDGYLGVVGSADP-AIVRKVQ-EINNKRRALYEQLSEQTGTTVAQVARVTGEKQIARAGAGQYYMDETGAWKQK 115          
BLAST of mRNA_P-canaliculata_contig99303.24046.1 vs. uniprot
Match: A0A2G2GEH7_9PROT (Uncharacterized protein n=1 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2GEH7_9PROT)

HSP 1 Score: 82.8 bits (203), Expect = 1.180e-17
Identity = 50/107 (46.73%), Postives = 72/107 (67.29%), Query Frame = 1
Query:   58 GTLLMNASGANAAYAQTGSAKATVDAAVSRGEVGEQINGYLGVVNGASPSADVRNAMAEINIARKSVYSRLAAQQNVAIDVVAQITGEKQIKKARSGHYVKDATGVW 378
            GT++++ + A  AYAQT SAK+ VD A + G VGE ++GYL +V  ++ S  V++A+ EINI RKSVY++ A     ++  VA ++GEK I KA+ G  VK A GVW
Sbjct:   34 GTVIVSQTFAPVAYAQTQSAKSIVDKAKTDGLVGETLSGYLALVT-STASTSVKSAVNEINIRRKSVYTKHARATGESVSDVAGVSGEKLINKAKLGEKVKLANGVW 139          
BLAST of mRNA_P-canaliculata_contig99303.24046.1 vs. uniprot
Match: A0A059FCQ7_9PROT (Uncharacterized protein n=1 Tax=Hyphomonas johnsonii MHS-2 TaxID=1280950 RepID=A0A059FCQ7_9PROT)

HSP 1 Score: 81.6 bits (200), Expect = 1.660e-17
Identity = 43/86 (50.00%), Postives = 58/86 (67.44%), Query Frame = 1
Query:  127 VDAAVSRGEVGEQINGYLGVVNGASPSADVRNAMAEINIARKSVYSRLAAQQNVAIDVVAQITGEKQIKKARSGHYVKDATGVWKQ 384
            ++AA+S GEVGE+I+GYLGVV  A P+  V   + EIN  R+++Y +L+ Q    +  VA++TGEKQI KA  G Y  D TG WKQ
Sbjct:   31 IEAAISAGEVGERIDGYLGVVGSADPA--VVRKVQEINNKRRALYEQLSKQTGTTVAQVARVTGEKQIAKAGPGQYYMDETGSWKQ 114          
BLAST of mRNA_P-canaliculata_contig99303.24046.1 vs. uniprot
Match: A0A3B0S8C5_9ZZZZ (Uncharacterized protein n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B0S8C5_9ZZZZ)

HSP 1 Score: 81.3 bits (199), Expect = 3.210e-17
Identity = 43/91 (47.25%), Postives = 63/91 (69.23%), Query Frame = 1
Query:  115 AKATVDAAVSRGEVGEQINGYLGVVNGASPSADVRNAMAEINIARKSVYSRLAAQQNVAIDVVAQITGEKQIKKARSGHYVKDATGVWKQK 387
            A + V+ A S+  VGEQ +GYLGVV GAS SA++R  + +IN  RK+ Y+ +A +  V+++V A +T EK I++ARSGH V+D  G W +K
Sbjct:   37 ASSIVEQAKSQCIVGEQADGYLGVVKGASASAELRRELRDINQRRKAYYADIARRNGVSVEVTAVLTAEKLIRQARSGHCVRDQRGNWVKK 127          
BLAST of mRNA_P-canaliculata_contig99303.24046.1 vs. uniprot
Match: A0A2G2J3G6_9PROT (Uncharacterized protein n=1 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2J3G6_9PROT)

HSP 1 Score: 80.5 bits (197), Expect = 6.580e-17
Identity = 55/117 (47.01%), Postives = 75/117 (64.10%), Query Frame = 1
Query:   31 IAALSLLAGGTLLMNASGANAAYAQTGSAKATVDAAVSRGEVGEQINGYLGVVNGASPSADVRNAMAEINIARKSVYSRLAAQQNVAIDVVAQITGEKQIKKARSGHYVKDATGVWK 381
            + ALSL  GG  L +AS A+ A AQT S+KA VD A +   VGE+I+GYL +VN  +P A V+ A+ EINI RKSVY++LA      + V+A+++GEK I KA     +    GVW+
Sbjct:   12 VLALSLSVGGFAL-SASYASVAMAQTTSSKAIVDQAKTDNLVGERIDGYLALVNANAP-AHVQAAVNEINIRRKSVYTKLARSGGTEVAVIARLSGEKLIAKAAPSTKIMGDDGVWR 126          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig99303.24046.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00167692BF2.310e-4059.69YdbL family protein n=1 Tax=Litorimonas cladophora... [more]
UPI00040999AB6.840e-2547.20YdbL family protein n=1 Tax=Hellea balneolensis Ta... [more]
A0A848V6D0_9PROT1.940e-2447.58YdbL family protein n=1 Tax=Hellea sp. TaxID=27156... [more]
A0A7C5R874_9PROT6.060e-2053.06DUF1318 domain-containing protein n=1 Tax=Hellea b... [more]
A0A350ZV68_9PROT1.320e-1947.32DUF1318 domain-containing protein n=1 Tax=Hyphomon... [more]
A0A0F2RC80_9PROT8.290e-1851.72Uncharacterized protein n=1 Tax=Hyphomonas sp. BRH... [more]
A0A2G2GEH7_9PROT1.180e-1746.73Uncharacterized protein n=1 Tax=Robiginitomaculum ... [more]
A0A059FCQ7_9PROT1.660e-1750.00Uncharacterized protein n=1 Tax=Hyphomonas johnson... [more]
A0A3B0S8C5_9ZZZZ3.210e-1747.25Uncharacterized protein n=1 Tax=hydrothermal vent ... [more]
A0A2G2J3G6_9PROT6.580e-1747.01Uncharacterized protein n=1 Tax=Robiginitomaculum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig99303contigP-canaliculata_contig99303:639..1028 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score100.9
Seed ortholog evalue4.6e-19
Seed eggNOG ortholog1121948.AUAC01000007_gene366
Preferred nameydbL
KEGG koko:K09978
EggNOG free text desc.Protein of unknown function (DUF1318)
EggNOG OGsCOG3784@1,COG3784@2
COG Functional cat.S
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categorysignal peptide
Exons1
Model size390
Cds size390
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817353.6079402-CDS-P-canaliculata_contig99303:638..10281622817353.6079402-CDS-P-canaliculata_contig99303:638..1028Pelvetia canaliculata dioeciousCDSP-canaliculata_contig99303 639..1028 -
1693495242.3337147-CDS-P-canaliculata_contig99303:638..10281693495242.3337147-CDS-P-canaliculata_contig99303:638..1028Pelvetia canaliculata dioeciousCDSP-canaliculata_contig99303 639..1028 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig99303.24046.1prot_P-canaliculata_contig99303.24046.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig99303 639..1028 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig99303.24046.1

>prot_P-canaliculata_contig99303.24046.1 ID=prot_P-canaliculata_contig99303.24046.1|Name=mRNA_P-canaliculata_contig99303.24046.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=130bp
MATLKTLLGGIAALSLLAGGTLLMNASGANAAYAQTGSAKATVDAAVSRG
EVGEQINGYLGVVNGASPSADVRNAMAEINIARKSVYSRLAAQQNVAIDV
VAQITGEKQIKKARSGHYVKDATGVWKQK*
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mRNA from alignment at P-canaliculata_contig99303:639..1028-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig99303.24046.1 ID=mRNA_P-canaliculata_contig99303.24046.1|Name=mRNA_P-canaliculata_contig99303.24046.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=390bp|location=Sequence derived from alignment at P-canaliculata_contig99303:639..1028- (Pelvetia canaliculata dioecious)
ATGGCCACATTGAAAACACTCTTAGGCGGCATCGCCGCTCTCTCGCTTCT CGCAGGCGGAACGCTCTTGATGAATGCATCCGGGGCTAACGCCGCCTATG CGCAAACAGGATCCGCGAAAGCGACCGTCGATGCCGCAGTCAGCCGCGGC GAAGTTGGTGAGCAAATCAACGGCTATCTTGGCGTTGTGAACGGGGCATC ACCGTCGGCGGATGTCCGAAATGCCATGGCTGAAATCAATATCGCTCGGA AATCGGTTTATTCTCGCTTGGCCGCACAACAAAATGTGGCCATCGATGTC GTCGCCCAAATCACAGGCGAGAAACAGATTAAGAAAGCCCGCAGCGGTCA CTATGTGAAAGACGCAACCGGCGTTTGGAAGCAAAAGTAA
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Coding sequence (CDS) from alignment at P-canaliculata_contig99303:639..1028-

>mRNA_P-canaliculata_contig99303.24046.1 ID=mRNA_P-canaliculata_contig99303.24046.1|Name=mRNA_P-canaliculata_contig99303.24046.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=780bp|location=Sequence derived from alignment at P-canaliculata_contig99303:639..1028- (Pelvetia canaliculata dioecious)
ATGGCCACATTGAAAACACTCTTAGGCGGCATCGCCGCTCTCTCGCTTCT
CGCAGGCGGAACGCTCTTGATGAATGCATCCGGGGCTAACGCCGCCTATG
CGCAAACAGGATCCGCGAAAGCGACCGTCGATGCCGCAGTCAGCCGCGGC
GAAGTTGGTGAGCAAATCAACGGCTATCTTGGCGTTGTGAACGGGGCATC
ACCGTCGGCGGATGTCCGAAATGCCATGGCTGAAATCAATATCGCTCGGA
AATCGGTTTATTCTCGCTTGGCCGCACAACAAAATGTGGCCATCGATGTC
GTCGCCCAAATCACAGGCGAGAAACAGATTAAGAAAGCCCGCAGCGGTCA
CTATGTGAAAGACGCAACCGGCGTTTGGAAGCAAAAGTAAATGGCCACAT
TGAAAACACTCTTAGGCGGCATCGCCGCTCTCTCGCTTCTCGCAGGCGGA
ACGCTCTTGATGAATGCATCCGGGGCTAACGCCGCCTATGCGCAAACAGG
ATCCGCGAAAGCGACCGTCGATGCCGCAGTCAGCCGCGGCGAAGTTGGTG
AGCAAATCAACGGCTATCTTGGCGTTGTGAACGGGGCATCACCGTCGGCG
GATGTCCGAAATGCCATGGCTGAAATCAATATCGCTCGGAAATCGGTTTA
TTCTCGCTTGGCCGCACAACAAAATGTGGCCATCGATGTCGTCGCCCAAA
TCACAGGCGAGAAACAGATTAAGAAAGCCCGCAGCGGTCACTATGTGAAA
GACGCAACCGGCGTTTGGAAGCAAAAGTAA
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