mRNA_P-canaliculata_contig99183.24034.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig99183.24034.1
Unique NamemRNA_P-canaliculata_contig99183.24034.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig99183.24034.1 vs. uniprot
Match: A0A5C6B0A3_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium Poly21 TaxID=2528014 RepID=A0A5C6B0A3_9BACT)

HSP 1 Score: 90.9 bits (224), Expect = 1.900e-19
Identity = 56/173 (32.37%), Postives = 93/173 (53.76%), Query Frame = 1 
Query:   70 SGIDYTEDSPTSGRVTAGMFVLGMPILLGFGFLVSTCIAYIARRMGAWVAWPLTAMVFAMLIYLSAVSSSPWNRLADVLNVDLQ-NVRICRLKQMDSFGDGITTLALIDGDDELFDRICLANGLRKTSDLTPSFFNWLYEDKTPFLEPVTVFENDRLTCYNDAANNRLFIYHR 585
            S +D++      GR TAG FVLG+P+L+    L +   + +ARR    +AW    ++F  L++ +   S+P  RL   L+V++  +V+I RL++ DSF DGITT+     D E  + +   + L  + D+T  + +    D    ++ V  + NDRLTCY+D+    L+   R
Sbjct:    2 SSMDFSTALAGDGRKTAGWFVLGLPMLVPIAMLSTMPFSMVARRGRRAIAWLAMCVLFGALMWFAYSQSTPLARLEWALDVEIPTDVKIIRLRETDSFNDGITTVGACIADREFINDLVAHHSL--SEDITGGYISPYLPDANISVDGVG-YRNDRLTCYHDSKTKTLYFVRR 171
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig99183.24034.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A5C6B0A3_9BACT1.900e-1932.37Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig99183contigP-canaliculata_contig99183:328..939 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size612
Cds size612
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817352.6743445-CDS-P-canaliculata_contig99183:327..9391622817352.6743445-CDS-P-canaliculata_contig99183:327..939Pelvetia canaliculata dioeciousCDSP-canaliculata_contig99183 328..939 -
1693495241.6851287-CDS-P-canaliculata_contig99183:327..9391693495241.6851287-CDS-P-canaliculata_contig99183:327..939Pelvetia canaliculata dioeciousCDSP-canaliculata_contig99183 328..939 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig99183.24034.1prot_P-canaliculata_contig99183.24034.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig99183 328..939 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig99183.24034.1

>prot_P-canaliculata_contig99183.24034.1 ID=prot_P-canaliculata_contig99183.24034.1|Name=mRNA_P-canaliculata_contig99183.24034.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=204bp
LLRPFSLFATSMICFLVWAWFSTSGIDYTEDSPTSGRVTAGMFVLGMPIL
LGFGFLVSTCIAYIARRMGAWVAWPLTAMVFAMLIYLSAVSSSPWNRLAD
VLNVDLQNVRICRLKQMDSFGDGITTLALIDGDDELFDRICLANGLRKTS
DLTPSFFNWLYEDKTPFLEPVTVFENDRLTCYNDAANNRLFIYHRSRSYP
GED*
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mRNA from alignment at P-canaliculata_contig99183:328..939-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig99183.24034.1 ID=mRNA_P-canaliculata_contig99183.24034.1|Name=mRNA_P-canaliculata_contig99183.24034.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=612bp|location=Sequence derived from alignment at P-canaliculata_contig99183:328..939- (Pelvetia canaliculata dioecious)
TTACTCAGACCTTTTAGCCTTTTCGCAACTTCTATGATTTGCTTTTTGGT
CTGGGCTTGGTTCTCAACGTCTGGGATTGATTACACTGAAGATTCTCCCA
CTTCGGGCCGGGTAACAGCAGGTATGTTTGTGTTGGGAATGCCGATTCTG
TTGGGCTTTGGCTTTCTTGTATCGACATGCATCGCTTACATAGCACGGCG
AATGGGAGCGTGGGTTGCATGGCCTCTCACTGCAATGGTTTTCGCCATGT
TGATTTATCTATCCGCAGTTAGTTCATCGCCATGGAATCGACTCGCTGAC
GTATTAAATGTAGATTTGCAGAATGTCAGGATCTGCCGACTGAAACAGAT
GGACTCTTTTGGCGATGGAATAACGACGCTCGCACTGATTGACGGTGATG
ACGAACTTTTTGATCGAATCTGTCTCGCGAACGGGCTTCGTAAAACGTCT
GACCTCACACCAAGCTTTTTCAACTGGCTTTACGAGGATAAGACACCGTT
TCTAGAGCCGGTCACCGTGTTTGAAAATGATCGCTTGACATGCTACAACG
ACGCCGCAAATAATAGACTCTTCATATACCACCGTTCTCGATCTTATCCG
GGCGAAGACTGA
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Coding sequence (CDS) from alignment at P-canaliculata_contig99183:328..939-

>mRNA_P-canaliculata_contig99183.24034.1 ID=mRNA_P-canaliculata_contig99183.24034.1|Name=mRNA_P-canaliculata_contig99183.24034.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1224bp|location=Sequence derived from alignment at P-canaliculata_contig99183:328..939- (Pelvetia canaliculata dioecious)
TTACTCAGACCTTTTAGCCTTTTCGCAACTTCTATGATTTGCTTTTTGGT
CTGGGCTTGGTTCTCAACGTCTGGGATTGATTACACTGAAGATTCTCCCA
CTTCGGGCCGGGTAACAGCAGGTATGTTTGTGTTGGGAATGCCGATTCTG
TTGGGCTTTGGCTTTCTTGTATCGACATGCATCGCTTACATAGCACGGCG
AATGGGAGCGTGGGTTGCATGGCCTCTCACTGCAATGGTTTTCGCCATGT
TGATTTATCTATCCGCAGTTAGTTCATCGCCATGGAATCGACTCGCTGAC
GTATTAAATGTAGATTTGCAGAATGTCAGGATCTGCCGACTGAAACAGAT
GGACTCTTTTGGCGATGGAATAACGACGCTCGCACTGATTGACGGTGATG
ACGAACTTTTTGATCGAATCTGTCTCGCGAACGGGCTTCGTAAAACGTCT
GACCTCACACCAAGCTTTTTCAACTGGCTTTACGAGGATAAGACACCGTT
TCTAGAGCCGGTCACCGTGTTTGAAAATGATCGCTTGACATGCTACAACG
ACGCCGCAAATAATAGACTCTTCATATACCACCGTTCTCGATCTTATCCG
GGCGAAGACTGATTACTCAGACCTTTTAGCCTTTTCGCAACTTCTATGAT
TTGCTTTTTGGTCTGGGCTTGGTTCTCAACGTCTGGGATTGATTACACTG
AAGATTCTCCCACTTCGGGCCGGGTAACAGCAGGTATGTTTGTGTTGGGA
ATGCCGATTCTGTTGGGCTTTGGCTTTCTTGTATCGACATGCATCGCTTA
CATAGCACGGCGAATGGGAGCGTGGGTTGCATGGCCTCTCACTGCAATGG
TTTTCGCCATGTTGATTTATCTATCCGCAGTTAGTTCATCGCCATGGAAT
CGACTCGCTGACGTATTAAATGTAGATTTGCAGAATGTCAGGATCTGCCG
ACTGAAACAGATGGACTCTTTTGGCGATGGAATAACGACGCTCGCACTGA
TTGACGGTGATGACGAACTTTTTGATCGAATCTGTCTCGCGAACGGGCTT
CGTAAAACGTCTGACCTCACACCAAGCTTTTTCAACTGGCTTTACGAGGA
TAAGACACCGTTTCTAGAGCCGGTCACCGTGTTTGAAAATGATCGCTTGA
CATGCTACAACGACGCCGCAAATAATAGACTCTTCATATACCACCGTTCT
CGATCTTATCCGGGCGAAGACTGA
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