mRNA_P-canaliculata_contig99150.24031.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig99150.24031.1
Unique NamemRNA_P-canaliculata_contig99150.24031.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig99150.24031.1 vs. uniprot
Match: UPI001184779B (DUF308 domain-containing protein n=1 Tax=Pleionea sediminis TaxID=2569479 RepID=UPI001184779B)

HSP 1 Score: 69.7 bits (169), Expect = 4.920e-14
Identity = 35/65 (53.85%), Postives = 52/65 (80.00%), Query Frame = 1
Query:    7 KKLLITCVGIALLLLGCIFLILPGPGFLILILALTLLSMEYPLARKWLTITQKRMKKVSAWADKK 201
            KK L+T  G+ LLL+G +F+ILPGP  LI+ LAL +L++EYP+A+KWL + QK+MK+ + WAD++
Sbjct:    5 KKALVTATGLLLLLIGVVFIILPGPAVLIIPLALGVLAIEYPIAKKWLRVFQKKMKQSAEWADRR 69          
BLAST of mRNA_P-canaliculata_contig99150.24031.1 vs. uniprot
Match: A0KY34_SHESA (Uncharacterized protein n=7 Tax=Shewanella TaxID=22 RepID=A0KY34_SHESA)

HSP 1 Score: 61.2 bits (147), Expect = 1.420e-10
Identity = 31/72 (43.06%), Postives = 51/72 (70.83%), Query Frame = 1
Query:    4 MKKLLITCVGIALLLLGCIFLILPGPGFLILILALTLLSMEYPLARKWLTITQKRMKKVSAWADKKLADRKR 219
            M + +IT +G    L+G IFL+LPGPG L +++ LTLLS +YP A++WL ++Q+++ K +AW D ++   +R
Sbjct:   17 MTRTVITVIGACFTLVGGIFLLLPGPGLLFILIGLTLLSTQYPWAKRWLRLSQRQLTKSAAWLDNQIRRHRR 88          
BLAST of mRNA_P-canaliculata_contig99150.24031.1 vs. uniprot
Match: Q0HU62_SHESR (Integral membrane protein TerC n=2 Tax=unclassified Shewanella TaxID=196818 RepID=Q0HU62_SHESR)

HSP 1 Score: 59.7 bits (143), Expect = 5.730e-10
Identity = 29/62 (46.77%), Postives = 46/62 (74.19%), Query Frame = 1
Query:   19 ITCVGIALLLLGCIFLILPGPGFLILILALTLLSMEYPLARKWLTITQKRMKKVSAWADKKL 204
            IT +G    L+G IFL+LPGPG L +++ LTLLS +YP A++WL ++Q+++ K +AW D ++
Sbjct:   22 ITVLGACFTLIGGIFLLLPGPGLLFILIGLTLLSTQYPWAKRWLRLSQRQLSKSAAWLDNQI 83          
BLAST of mRNA_P-canaliculata_contig99150.24031.1 vs. uniprot
Match: A0A316G2W2_9GAMM (Uncharacterized protein (TIGR02611 family) n=1 Tax=Pleionea mediterranea TaxID=523701 RepID=A0A316G2W2_9GAMM)

HSP 1 Score: 59.3 bits (142), Expect = 6.210e-10
Identity = 31/65 (47.69%), Postives = 45/65 (69.23%), Query Frame = 1
Query:    7 KKLLITCVGIALLLLGCIFLILPGPGFLILILALTLLSMEYPLARKWLTITQKRMKKVSAWADKK 201
            KK L+T +G  +LL+G +F++LPGP  LI+ L L LL+ EYP+A KWL   Q+++   + WAD K
Sbjct:    5 KKTLVTLIGTLILLVGVVFIVLPGPAVLIIPLGLALLATEYPIAEKWLRRFQRQLSSSAKWADAK 69          
BLAST of mRNA_P-canaliculata_contig99150.24031.1 vs. uniprot
Match: A0A2D6RDX3_9GAMM (Tellurium resistance protein TerC n=1 Tax=Colwelliaceae bacterium TaxID=2026726 RepID=A0A2D6RDX3_9GAMM)

HSP 1 Score: 58.2 bits (139), Expect = 1.770e-9
Identity = 34/73 (46.58%), Postives = 50/73 (68.49%), Query Frame = 1
Query:    1 TMKKLLITCVGIALLLLGCIFLILPGPGFLILILALTLLSMEYPLARKWLTITQKRMKKVSAWADKKLADRKR 219
            +M+K+LIT VG  L  +G +F+++PGP FL L + L +LS+EYPLA+KWL   Q+ M+K +   D+ L   KR
Sbjct:    4 SMRKILITLVGGLLAFMGLVFVLVPGPAFLFLPVGLAILSLEYPLAKKWLKKCQRWMRKGAEQTDRMLGKLKR 76          
BLAST of mRNA_P-canaliculata_contig99150.24031.1 vs. uniprot
Match: UPI00048DFBE4 (PGPGW domain-containing protein n=1 Tax=Shewanella TaxID=22 RepID=UPI00048DFBE4)

HSP 1 Score: 57.4 bits (137), Expect = 3.230e-9
Identity = 28/67 (41.79%), Postives = 50/67 (74.63%), Query Frame = 1
Query:    4 MKKLLITCVGIALLLLGCIFLILPGPGFLILILALTLLSMEYPLARKWLTITQKRMKKVSAWADKKL 204
            ++K ++T +G     LG +F++LPGP +L+L + L +LS+EYP A+++L I+Q++M + +AW DKK+
Sbjct:    2 LRKTMVTIIGGLTTALGVVFILLPGPAWLLLPIGLAILSLEYPWAKRYLRISQRKMSQSAAWMDKKI 68          
BLAST of mRNA_P-canaliculata_contig99150.24031.1 vs. uniprot
Match: A0A7G5HZT8_9GAMM (Uncharacterized protein n=2 Tax=Pseudoalteromonas TaxID=53246 RepID=A0A7G5HZT8_9GAMM)

HSP 1 Score: 56.2 bits (134), Expect = 8.380e-9
Identity = 34/68 (50.00%), Postives = 45/68 (66.18%), Query Frame = 1
Query:    4 MKKLLITCVGIALLLLGCIFLILPGPGFLILILALTLLSMEYPLARKWLTITQKRMKKVSAWADKKLA 207
            MKK+L+  +GI  +LLG IF+I+PGP  L  I+ L   S  YPLAR++L   QK + K  A+ DKKLA
Sbjct:    1 MKKILLVSLGILSMLLGLIFVIVPGPSLLFFIVGLLCFSFYYPLARRYLVYCQKALTKSCAYLDKKLA 68          
BLAST of mRNA_P-canaliculata_contig99150.24031.1 vs. uniprot
Match: A0A6N8FEE9_9GAMM (Tellurium resistance protein TerC n=2 Tax=Psychrosphaera haliotis TaxID=555083 RepID=A0A6N8FEE9_9GAMM)

HSP 1 Score: 54.7 bits (130), Expect = 3.820e-8
Identity = 33/71 (46.48%), Postives = 47/71 (66.20%), Query Frame = 1
Query:    4 MKKLLITCVGIALLLLGCIFLILPGPGFLILILALTLLSMEYPLARKWLTITQKRMKKVSAWADKKLADRK 216
            +K+L I  VG +L+L+G IF+++PGP  L+LI  L +LS EY +AR WL   Q  +KK + W D K+  RK
Sbjct:    2 LKQLFIHLVGGSLVLMGLIFIVVPGPSLLLLIPGLYILSFEYEIARVWLKKCQLMLKKSANWIDSKIRARK 72          
BLAST of mRNA_P-canaliculata_contig99150.24031.1 vs. uniprot
Match: UPI001FD0B3E1 (PGPGW domain-containing protein n=1 Tax=Psychrosphaera aestuarii TaxID=1266052 RepID=UPI001FD0B3E1)

HSP 1 Score: 53.9 bits (128), Expect = 8.240e-8
Identity = 33/71 (46.48%), Postives = 46/71 (64.79%), Query Frame = 1
Query:    4 MKKLLITCVGIALLLLGCIFLILPGPGFLILILALTLLSMEYPLARKWLTITQKRMKKVSAWADKKLADRK 216
            +K+L I  VG  L+LLG IF+++PGP  L+LI  L +LS EY +AR WL   Q  +KK + W D K+  R+
Sbjct:    4 LKQLFIHLVGGTLVLLGLIFIVVPGPSLLLLIPGLYILSFEYEIARVWLRKCQVMLKKSANWLDNKIRARR 74          
BLAST of mRNA_P-canaliculata_contig99150.24031.1 vs. uniprot
Match: UPI001C085687 (tellurium resistance protein TerC n=2 Tax=Pseudoalteromonas TaxID=53246 RepID=UPI001C085687)

HSP 1 Score: 53.1 bits (126), Expect = 1.510e-7
Identity = 29/49 (59.18%), Postives = 39/49 (79.59%), Query Frame = 1
Query:    4 MKKLLITCVGIALLLLGCIFLILPGPGFLILILALTLLSMEYPLARKWL 150
            MKK+ IT VG  LLL+G +F+ILPGP  +++ LAL LLS EYP+A++WL
Sbjct:    4 MKKIAITLVGGFLLLIGLLFIILPGPAIIVIPLALVLLSKEYPIAKQWL 52          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig99150.24031.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
UPI001184779B4.920e-1453.85DUF308 domain-containing protein n=1 Tax=Pleionea ... [more]
A0KY34_SHESA1.420e-1043.06Uncharacterized protein n=7 Tax=Shewanella TaxID=2... [more]
Q0HU62_SHESR5.730e-1046.77Integral membrane protein TerC n=2 Tax=unclassifie... [more]
A0A316G2W2_9GAMM6.210e-1047.69Uncharacterized protein (TIGR02611 family) n=1 Tax... [more]
A0A2D6RDX3_9GAMM1.770e-946.58Tellurium resistance protein TerC n=1 Tax=Colwelli... [more]
UPI00048DFBE43.230e-941.79PGPGW domain-containing protein n=1 Tax=Shewanella... [more]
A0A7G5HZT8_9GAMM8.380e-950.00Uncharacterized protein n=2 Tax=Pseudoalteromonas ... [more]
A0A6N8FEE9_9GAMM3.820e-846.48Tellurium resistance protein TerC n=2 Tax=Psychros... [more]
UPI001FD0B3E18.240e-846.48PGPGW domain-containing protein n=1 Tax=Psychrosph... [more]
UPI001C0856871.510e-759.18tellurium resistance protein TerC n=2 Tax=Pseudoal... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig99150contigP-canaliculata_contig99150:323..559 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score60.8
Seed ortholog evalue3.2e-07
Seed eggNOG ortholog94122.Shewana3_2474
KEGG koko:K07301
KEGG TC2.A.19.5
EggNOG free text desc.Putative transmembrane protein (PGPGW)
EggNOG OGs1P4HI@1224,1T2NW@1236,2QCWN@267890,COG0530@1,COG0530@2
COG Functional cat.P
Best tax levelShewanellaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Hectar predicted targeting categorysignal anchor
Exons1
Model size237
Cds size234
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817352.5459058-CDS-P-canaliculata_contig99150:322..5561622817352.5459058-CDS-P-canaliculata_contig99150:322..556Pelvetia canaliculata dioeciousCDSP-canaliculata_contig99150 323..556 -
1693495241.6319973-CDS-P-canaliculata_contig99150:322..5561693495241.6319973-CDS-P-canaliculata_contig99150:322..556Pelvetia canaliculata dioeciousCDSP-canaliculata_contig99150 323..556 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817352.5594494-UTR-P-canaliculata_contig99150:556..5591622817352.5594494-UTR-P-canaliculata_contig99150:556..559Pelvetia canaliculata dioeciousUTRP-canaliculata_contig99150 557..559 -
1693495241.6494498-UTR-P-canaliculata_contig99150:556..5591693495241.6494498-UTR-P-canaliculata_contig99150:556..559Pelvetia canaliculata dioeciousUTRP-canaliculata_contig99150 557..559 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig99150.24031.1prot_P-canaliculata_contig99150.24031.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig99150 323..556 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig99150.24031.1

>prot_P-canaliculata_contig99150.24031.1 ID=prot_P-canaliculata_contig99150.24031.1|Name=mRNA_P-canaliculata_contig99150.24031.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=78bp
MKKLLITCVGIALLLLGCIFLILPGPGFLILILALTLLSMEYPLARKWLT
ITQKRMKKVSAWADKKLADRKRAKYEF*
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mRNA from alignment at P-canaliculata_contig99150:323..559-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig99150.24031.1 ID=mRNA_P-canaliculata_contig99150.24031.1|Name=mRNA_P-canaliculata_contig99150.24031.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=237bp|location=Sequence derived from alignment at P-canaliculata_contig99150:323..559- (Pelvetia canaliculata dioecious)
ACAATGAAAAAACTACTTATCACCTGTGTGGGCATTGCTCTATTATTACT GGGTTGTATTTTTCTTATTCTACCAGGCCCTGGTTTTTTAATTTTAATTC TCGCTTTAACTTTGCTTAGTATGGAATACCCTTTAGCTAGAAAATGGTTA ACCATCACTCAAAAACGAATGAAGAAAGTATCGGCTTGGGCTGATAAAAA ACTAGCGGATCGAAAAAGAGCCAAATACGAATTTTAA
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Coding sequence (CDS) from alignment at P-canaliculata_contig99150:323..559-

>mRNA_P-canaliculata_contig99150.24031.1 ID=mRNA_P-canaliculata_contig99150.24031.1|Name=mRNA_P-canaliculata_contig99150.24031.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=468bp|location=Sequence derived from alignment at P-canaliculata_contig99150:323..559- (Pelvetia canaliculata dioecious)
ATGAAAAAACTACTTATCACCTGTGTGGGCATTGCTCTATTATTACTGGG
TTGTATTTTTCTTATTCTACCAGGCCCTGGTTTTTTAATTTTAATTCTCG
CTTTAACTTTGCTTAGTATGGAATACCCTTTAGCTAGAAAATGGTTAACC
ATCACTCAAAAACGAATGAAGAAAGTATCGGCTTGGGCTGATAAAAAACT
AGCGGATCGAAAAAGAGCCAAATACGAATTTTAAATGAAAAAACTACTTA
TCACCTGTGTGGGCATTGCTCTATTATTACTGGGTTGTATTTTTCTTATT
CTACCAGGCCCTGGTTTTTTAATTTTAATTCTCGCTTTAACTTTGCTTAG
TATGGAATACCCTTTAGCTAGAAAATGGTTAACCATCACTCAAAAACGAA
TGAAGAAAGTATCGGCTTGGGCTGATAAAAAACTAGCGGATCGAAAAAGA
GCCAAATACGAATTTTAA
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