mRNA_P-canaliculata_contig99082.24028.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig99082.24028.1
Unique NamemRNA_P-canaliculata_contig99082.24028.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig99082.24028.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig99082contigP-canaliculata_contig99082:558..1052 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score105.5
Seed ortholog evalue2.4e-20
Seed eggNOG ortholog84531.JMTZ01000004_gene2386
EggNOG OGs1NX1N@1224,2DW0R@1,33Y0N@2
Best tax levelProteobacteria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size495
Cds size495
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817352.2716918-CDS-P-canaliculata_contig99082:557..10521622817352.2716918-CDS-P-canaliculata_contig99082:557..1052Pelvetia canaliculata dioeciousCDSP-canaliculata_contig99082 558..1052 +
1693495241.4317822-CDS-P-canaliculata_contig99082:557..10521693495241.4317822-CDS-P-canaliculata_contig99082:557..1052Pelvetia canaliculata dioeciousCDSP-canaliculata_contig99082 558..1052 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig99082.24028.1prot_P-canaliculata_contig99082.24028.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig99082 558..1052 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig99082.24028.1

>prot_P-canaliculata_contig99082.24028.1 ID=prot_P-canaliculata_contig99082.24028.1|Name=mRNA_P-canaliculata_contig99082.24028.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=165bp
MPRFSNVVDGTHGTEANTALKILDSMSNGGPAFRPDLGERGLVQWFVTEG
SPRTGSTPPSAVHIPAEVIVPRGSDVLEFNDTKLREIYDELLPGATDLAK
EQYATNFPARSLTSNRSVNRIEYNARNIAEGQMWTELGKRVAASDSGLGR
VVQSGASIFSRDRPG
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mRNA from alignment at P-canaliculata_contig99082:558..1052+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig99082.24028.1 ID=mRNA_P-canaliculata_contig99082.24028.1|Name=mRNA_P-canaliculata_contig99082.24028.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=495bp|location=Sequence derived from alignment at P-canaliculata_contig99082:558..1052+ (Pelvetia canaliculata dioecious)
ATGCCAAGATTTTCTAACGTGGTGGACGGCACACACGGTACAGAAGCTAA
TACGGCGTTGAAAATTCTTGATTCCATGAGCAACGGGGGCCCAGCTTTCA
GGCCGGATCTTGGAGAAAGAGGACTCGTGCAATGGTTTGTAACCGAAGGA
TCTCCCAGAACGGGTTCTACACCCCCTTCGGCCGTGCACATTCCTGCAGA
GGTCATTGTTCCGAGAGGTTCTGACGTTCTGGAATTTAACGATACGAAGC
TGCGTGAAATTTACGATGAGTTATTGCCAGGCGCAACTGACCTGGCTAAA
GAACAATACGCAACGAATTTTCCTGCTCGTTCTCTGACGTCAAATCGTTC
TGTAAATCGAATTGAATACAATGCAAGGAATATCGCTGAAGGACAAATGT
GGACAGAGTTAGGGAAACGTGTAGCTGCGTCTGACAGTGGTTTGGGCCGA
GTCGTACAGTCCGGCGCAAGTATTTTCTCACGGGATCGACCAGGT
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Coding sequence (CDS) from alignment at P-canaliculata_contig99082:558..1052+

>mRNA_P-canaliculata_contig99082.24028.1 ID=mRNA_P-canaliculata_contig99082.24028.1|Name=mRNA_P-canaliculata_contig99082.24028.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=990bp|location=Sequence derived from alignment at P-canaliculata_contig99082:558..1052+ (Pelvetia canaliculata dioecious)
ATGCCAAGATTTTCTAACGTGGTGGACGGCACACACGGTACAGAAGCTAA
TACGGCGTTGAAAATTCTTGATTCCATGAGCAACGGGGGCCCAGCTTTCA
GGCCGGATCTTGGAGAAAGAGGACTCGTGCAATGGTTTGTAACCGAAGGA
TCTCCCAGAACGGGTTCTACACCCCCTTCGGCCGTGCACATTCCTGCAGA
GGTCATTGTTCCGAGAGGTTCTGACGTTCTGGAATTTAACGATACGAAGC
TGCGTGAAATTTACGATGAGTTATTGCCAGGCGCAACTGACCTGGCTAAA
GAACAATACGCAACGAATTTTCCTGCTCGTTCTCTGACGTCAAATCGTTC
TGTAAATCGAATTGAATACAATGCAAGGAATATCGCTGAAGGACAAATGT
GGACAGAGTTAGGGAAACGTGTAGCTGCGTCTGACAGTGGTTTGGGCCGA
GTCGTACAGTCCGGCGCAAGTATTTTCTCACGGGATCGACCAGGTATGCC
AAGATTTTCTAACGTGGTGGACGGCACACACGGTACAGAAGCTAATACGG
CGTTGAAAATTCTTGATTCCATGAGCAACGGGGGCCCAGCTTTCAGGCCG
GATCTTGGAGAAAGAGGACTCGTGCAATGGTTTGTAACCGAAGGATCTCC
CAGAACGGGTTCTACACCCCCTTCGGCCGTGCACATTCCTGCAGAGGTCA
TTGTTCCGAGAGGTTCTGACGTTCTGGAATTTAACGATACGAAGCTGCGT
GAAATTTACGATGAGTTATTGCCAGGCGCAACTGACCTGGCTAAAGAACA
ATACGCAACGAATTTTCCTGCTCGTTCTCTGACGTCAAATCGTTCTGTAA
ATCGAATTGAATACAATGCAAGGAATATCGCTGAAGGACAAATGTGGACA
GAGTTAGGGAAACGTGTAGCTGCGTCTGACAGTGGTTTGGGCCGAGTCGT
ACAGTCCGGCGCAAGTATTTTCTCACGGGATCGACCAGGT
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