mRNA_P-canaliculata_contig99079.24027.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig99079.24027.1
Unique NamemRNA_P-canaliculata_contig99079.24027.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig99079.24027.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig99079contigP-canaliculata_contig99079:3..899 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size897
Cds size897
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817352.2366765-CDS-P-canaliculata_contig99079:2..8991622817352.2366765-CDS-P-canaliculata_contig99079:2..899Pelvetia canaliculata dioeciousCDSP-canaliculata_contig99079 3..899 -
1693495241.4218698-CDS-P-canaliculata_contig99079:2..8991693495241.4218698-CDS-P-canaliculata_contig99079:2..899Pelvetia canaliculata dioeciousCDSP-canaliculata_contig99079 3..899 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig99079.24027.1prot_P-canaliculata_contig99079.24027.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig99079 3..899 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig99079.24027.1

>prot_P-canaliculata_contig99079.24027.1 ID=prot_P-canaliculata_contig99079.24027.1|Name=mRNA_P-canaliculata_contig99079.24027.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=299bp
KPCDVATLEIDIVAPEQSHSVTVSSQRRKEPIAASVAEVYQSKLKSNDLI
VEIIAPVEETTSTTELVYLSTTTAATEGHEPVKITAKAKPASSCGPTHPA
LSAIGGDVNEKSERIPLNFEVLTPPPTGIKSTSFGRIWPFGKSDNWSQEI
AVKADSCGILPGGQPNKDLSILLVSKPDESFKITLGLGTYYSAKKTTETI
HDTGPDKKSRGKLVTYKEQSGNKTETRKHIEVADTRFSSVYTSTETTGMV
VRESKTSTTDYMGNLPPTHDKWDRSLGQPNTDDKNELRRIKIERTVGGQ
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mRNA from alignment at P-canaliculata_contig99079:3..899-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig99079.24027.1 ID=mRNA_P-canaliculata_contig99079.24027.1|Name=mRNA_P-canaliculata_contig99079.24027.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=897bp|location=Sequence derived from alignment at P-canaliculata_contig99079:3..899- (Pelvetia canaliculata dioecious)
AAGCCCTGCGATGTTGCGACCTTAGAAATTGATATTGTCGCCCCGGAACA
GTCACATAGTGTCACTGTATCGTCACAACGCCGGAAAGAGCCCATCGCGG
CCAGTGTGGCGGAGGTTTATCAATCCAAACTAAAATCTAACGATCTAATC
GTAGAAATCATCGCGCCTGTTGAGGAGACAACATCGACAACCGAGTTAGT
CTACTTGAGTACGACGACTGCAGCGACTGAAGGACATGAGCCTGTAAAAA
TCACGGCGAAAGCTAAGCCTGCCTCTAGCTGTGGCCCGACCCATCCGGCC
CTATCCGCAATTGGTGGAGATGTGAACGAAAAATCCGAACGCATACCTTT
AAATTTCGAAGTCCTCACACCCCCACCAACGGGGATCAAATCAACTAGTT
TTGGGCGGATTTGGCCTTTTGGAAAATCAGATAACTGGTCTCAAGAAATT
GCGGTCAAGGCAGACAGCTGTGGCATATTACCCGGCGGTCAACCCAACAA
AGACCTATCAATCCTCTTAGTCTCTAAACCTGATGAGAGCTTCAAAATAA
CACTTGGTTTAGGAACATACTATTCTGCAAAGAAAACAACAGAGACGATT
CACGATACCGGTCCGGATAAGAAAAGCAGAGGAAAGCTGGTCACTTATAA
AGAACAATCGGGAAACAAGACAGAGACCCGAAAGCATATAGAAGTAGCGG
ATACGCGGTTCAGCAGCGTATACACATCAACTGAGACAACTGGAATGGTT
GTCAGAGAAAGTAAAACTTCTACTACCGACTACATGGGAAATCTCCCCCC
TACCCATGACAAATGGGACCGGTCCCTCGGACAGCCAAACACTGACGATA
AAAACGAGCTACGTAGGATAAAGATTGAACGCACCGTGGGCGGGCAA
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Coding sequence (CDS) from alignment at P-canaliculata_contig99079:3..899-

>mRNA_P-canaliculata_contig99079.24027.1 ID=mRNA_P-canaliculata_contig99079.24027.1|Name=mRNA_P-canaliculata_contig99079.24027.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1794bp|location=Sequence derived from alignment at P-canaliculata_contig99079:3..899- (Pelvetia canaliculata dioecious)
AAGCCCTGCGATGTTGCGACCTTAGAAATTGATATTGTCGCCCCGGAACA
GTCACATAGTGTCACTGTATCGTCACAACGCCGGAAAGAGCCCATCGCGG
CCAGTGTGGCGGAGGTTTATCAATCCAAACTAAAATCTAACGATCTAATC
GTAGAAATCATCGCGCCTGTTGAGGAGACAACATCGACAACCGAGTTAGT
CTACTTGAGTACGACGACTGCAGCGACTGAAGGACATGAGCCTGTAAAAA
TCACGGCGAAAGCTAAGCCTGCCTCTAGCTGTGGCCCGACCCATCCGGCC
CTATCCGCAATTGGTGGAGATGTGAACGAAAAATCCGAACGCATACCTTT
AAATTTCGAAGTCCTCACACCCCCACCAACGGGGATCAAATCAACTAGTT
TTGGGCGGATTTGGCCTTTTGGAAAATCAGATAACTGGTCTCAAGAAATT
GCGGTCAAGGCAGACAGCTGTGGCATATTACCCGGCGGTCAACCCAACAA
AGACCTATCAATCCTCTTAGTCTCTAAACCTGATGAGAGCTTCAAAATAA
CACTTGGTTTAGGAACATACTATTCTGCAAAGAAAACAACAGAGACGATT
CACGATACCGGTCCGGATAAGAAAAGCAGAGGAAAGCTGGTCACTTATAA
AGAACAATCGGGAAACAAGACAGAGACCCGAAAGCATATAGAAGTAGCGG
ATACGCGGTTCAGCAGCGTATACACATCAACTGAGACAACTGGAATGGTT
GTCAGAGAAAGTAAAACTTCTACTACCGACTACATGGGAAATCTCCCCCC
TACCCATGACAAATGGGACCGGTCCCTCGGACAGCCAAACACTGACGATA
AAAACGAGCTACGTAGGATAAAGATTGAACGCACCGTGGGCGGGCAAAAG
CCCTGCGATGTTGCGACCTTAGAAATTGATATTGTCGCCCCGGAACAGTC
ACATAGTGTCACTGTATCGTCACAACGCCGGAAAGAGCCCATCGCGGCCA
GTGTGGCGGAGGTTTATCAATCCAAACTAAAATCTAACGATCTAATCGTA
GAAATCATCGCGCCTGTTGAGGAGACAACATCGACAACCGAGTTAGTCTA
CTTGAGTACGACGACTGCAGCGACTGAAGGACATGAGCCTGTAAAAATCA
CGGCGAAAGCTAAGCCTGCCTCTAGCTGTGGCCCGACCCATCCGGCCCTA
TCCGCAATTGGTGGAGATGTGAACGAAAAATCCGAACGCATACCTTTAAA
TTTCGAAGTCCTCACACCCCCACCAACGGGGATCAAATCAACTAGTTTTG
GGCGGATTTGGCCTTTTGGAAAATCAGATAACTGGTCTCAAGAAATTGCG
GTCAAGGCAGACAGCTGTGGCATATTACCCGGCGGTCAACCCAACAAAGA
CCTATCAATCCTCTTAGTCTCTAAACCTGATGAGAGCTTCAAAATAACAC
TTGGTTTAGGAACATACTATTCTGCAAAGAAAACAACAGAGACGATTCAC
GATACCGGTCCGGATAAGAAAAGCAGAGGAAAGCTGGTCACTTATAAAGA
ACAATCGGGAAACAAGACAGAGACCCGAAAGCATATAGAAGTAGCGGATA
CGCGGTTCAGCAGCGTATACACATCAACTGAGACAACTGGAATGGTTGTC
AGAGAAAGTAAAACTTCTACTACCGACTACATGGGAAATCTCCCCCCTAC
CCATGACAAATGGGACCGGTCCCTCGGACAGCCAAACACTGACGATAAAA
ACGAGCTACGTAGGATAAAGATTGAACGCACCGTGGGCGGGCAA
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