mRNA_P-canaliculata_contig99054.24025.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig99054.24025.1
Unique NamemRNA_P-canaliculata_contig99054.24025.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig99054.24025.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig99054contigP-canaliculata_contig99054:335..923 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size590
Cds size375
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817352.0317538-UTR-P-canaliculata_contig99054:334..5481622817352.0317538-UTR-P-canaliculata_contig99054:334..548Pelvetia canaliculata dioeciousUTRP-canaliculata_contig99054 335..548 +
1693495241.297569-UTR-P-canaliculata_contig99054:334..5481693495241.297569-UTR-P-canaliculata_contig99054:334..548Pelvetia canaliculata dioeciousUTRP-canaliculata_contig99054 335..548 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817352.0460823-CDS-P-canaliculata_contig99054:548..9231622817352.0460823-CDS-P-canaliculata_contig99054:548..923Pelvetia canaliculata dioeciousCDSP-canaliculata_contig99054 549..923 +
1693495241.3071759-CDS-P-canaliculata_contig99054:548..9231693495241.3071759-CDS-P-canaliculata_contig99054:548..923Pelvetia canaliculata dioeciousCDSP-canaliculata_contig99054 549..923 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig99054.24025.1prot_P-canaliculata_contig99054.24025.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig99054 549..923 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig99054.24025.1

>prot_P-canaliculata_contig99054.24025.1 ID=prot_P-canaliculata_contig99054.24025.1|Name=mRNA_P-canaliculata_contig99054.24025.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=125bp
MAEYWVQHASDGLVYVYNRKCRIEGCGKRPSYGVAGTKSVEYCAQHAPDG
MVDVTSRKCRTEGCGKKPSYGVTGSKTAEYCAQHALDGMVNFHSRKCRTE
GCKIGSSYGVAGTKAAEYCAQHAPD
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mRNA from alignment at P-canaliculata_contig99054:335..923+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig99054.24025.1 ID=mRNA_P-canaliculata_contig99054.24025.1|Name=mRNA_P-canaliculata_contig99054.24025.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=589bp|location=Sequence derived from alignment at P-canaliculata_contig99054:335..923+ (Pelvetia canaliculata dioecious)
CCGTGGTTTTGTGGGCAACACGTCAAGGACGAGACGGTCTACTTCTCCAG
CAGCTGAAGTTTGCAACGAAATACCAGCATTCAAAACTGAAGGCGAGCGG
GTTGTGGACTGCTGCGCATAGCAAGCCCCGAACGGGATAGTCGAGGACAA
GAACAGGTAGTGCAGAACCCGGGGCTGCTTCAATTGGCCGTCTTTCGGAG
TGGCCAGCACAAGAATGGCAGAGTACTGGGTACAGCACGCATCGGACGGG
TTGGTCTACGTCTACAACAGAAAGTGCAGAATCGAAGGCTGCGGAAAGAG
GCCGTCGTATGGAGTGGCAGGTACGAAAAGTGTTGAGTACTGTGCACAGC
ACGCACCGGACGGGATGGTCGACGTCACGAGCAGAAAGTGCAGAACCGAA
GGCTGCGGCAAGAAACCGTCGTACGGAGTGACAGGTTCGAAAACTGCGGA
GTATTGTGCTCAGCATGCACTGGACGGGATGGTCAACTTCCACAGCAGAA
AGTGCAGAACCGAAGGCTGCAAAATTGGGTCGTCGTATGGAGTTGCGGGT
ACGAAAGCTGCGGAGTATTGTGCACAGCACGCACCGGAC
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Coding sequence (CDS) from alignment at P-canaliculata_contig99054:335..923+

>mRNA_P-canaliculata_contig99054.24025.1 ID=mRNA_P-canaliculata_contig99054.24025.1|Name=mRNA_P-canaliculata_contig99054.24025.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=750bp|location=Sequence derived from alignment at P-canaliculata_contig99054:335..923+ (Pelvetia canaliculata dioecious)
ATGGCAGAGTACTGGGTACAGCACGCATCGGACGGGTTGGTCTACGTCTA
CAACAGAAAGTGCAGAATCGAAGGCTGCGGAAAGAGGCCGTCGTATGGAG
TGGCAGGTACGAAAAGTGTTGAGTACTGTGCACAGCACGCACCGGACGGG
ATGGTCGACGTCACGAGCAGAAAGTGCAGAACCGAAGGCTGCGGCAAGAA
ACCGTCGTACGGAGTGACAGGTTCGAAAACTGCGGAGTATTGTGCTCAGC
ATGCACTGGACGGGATGGTCAACTTCCACAGCAGAAAGTGCAGAACCGAA
GGCTGCAAAATTGGGTCGTCGTATGGAGTTGCGGGTACGAAAGCTGCGGA
GTATTGTGCACAGCACGCACCGGACATGGCAGAGTACTGGGTACAGCACG
CATCGGACGGGTTGGTCTACGTCTACAACAGAAAGTGCAGAATCGAAGGC
TGCGGAAAGAGGCCGTCGTATGGAGTGGCAGGTACGAAAAGTGTTGAGTA
CTGTGCACAGCACGCACCGGACGGGATGGTCGACGTCACGAGCAGAAAGT
GCAGAACCGAAGGCTGCGGCAAGAAACCGTCGTACGGAGTGACAGGTTCG
AAAACTGCGGAGTATTGTGCTCAGCATGCACTGGACGGGATGGTCAACTT
CCACAGCAGAAAGTGCAGAACCGAAGGCTGCAAAATTGGGTCGTCGTATG
GAGTTGCGGGTACGAAAGCTGCGGAGTATTGTGCACAGCACGCACCGGAC
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