mRNA_P-canaliculata_contig9905.24024.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig9905.24024.1
Unique NamemRNA_P-canaliculata_contig9905.24024.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9905.24024.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig9905contigP-canaliculata_contig9905:6798..8062 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size505
Cds size501
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig9905.24024.1prot_P-canaliculata_contig9905.24024.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig9905 6800..8062 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817351.970915-CDS-P-canaliculata_contig9905:6799..69021622817351.970915-CDS-P-canaliculata_contig9905:6799..6902Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9905 6800..6902 -
1693495241.2663305-CDS-P-canaliculata_contig9905:6799..69021693495241.2663305-CDS-P-canaliculata_contig9905:6799..6902Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9905 6800..6902 -
1622817351.982423-CDS-P-canaliculata_contig9905:7295..74201622817351.982423-CDS-P-canaliculata_contig9905:7295..7420Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9905 7296..7420 -
1693495241.2774792-CDS-P-canaliculata_contig9905:7295..74201693495241.2774792-CDS-P-canaliculata_contig9905:7295..7420Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9905 7296..7420 -
1622817351.9956367-CDS-P-canaliculata_contig9905:7789..80621622817351.9956367-CDS-P-canaliculata_contig9905:7789..8062Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9905 7790..8062 -
1693495241.2870734-CDS-P-canaliculata_contig9905:7789..80621693495241.2870734-CDS-P-canaliculata_contig9905:7789..8062Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9905 7790..8062 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig9905.24024.1

>prot_P-canaliculata_contig9905.24024.1 ID=prot_P-canaliculata_contig9905.24024.1|Name=mRNA_P-canaliculata_contig9905.24024.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=167bp
PSPEGKTGRLSPFWANFILRMVGWYSAMVLDARILTEFHAGGGGMESVEG
GESLSPSAVVTTEVFVSSFEACTKQLDDGSGGVKLVVRVVQDADHVMVYP
STDSPGGSATFQGAVSLEVEVVPLRGKRLPAYSPALMLRSASVSSGAPWR
AVVGERDIEAFATLLPA
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mRNA from alignment at P-canaliculata_contig9905:6798..8062-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig9905.24024.1 ID=mRNA_P-canaliculata_contig9905.24024.1|Name=mRNA_P-canaliculata_contig9905.24024.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=1265bp|location=Sequence derived from alignment at P-canaliculata_contig9905:6798..8062- (Pelvetia canaliculata dioecious)
CCATCGCCCGAGGGCAAAACGGGACGCCTGTCTCCATTCTGGGCAAATTT
TATCTTAAGGATGGTCGGCTGGTACAGCGCCATGGTGTTGGACGCTCGAA
TCTTGACGGAGTTTCACGCAGGAGGCGGCGGAATGGAGTCAGTAGAGGGG
GGGGAATCACTGTCGCCATCAGCTGTCGTAACGACCGAAGTTTTCGTGTC
GTCTTTCGAGGCATGCACCAAGCAACTAGATGACGGATCCGGCGGGGTCA
AGCTTGTGGTGCGCGTGGTCCAGGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGCGTGCATGGGTTCGCACGTGGTCGTGGTTCAGTGAAACGAAATCGAGC
GTCGGCGGGACTTTCTCTACGAACGTAACAAGACGCATCCTAATCTCTTC
TGGCCACGAGTAACACACAACAGGGAAAATTATGTGATGTGGGTTTATAG
ACAGCATCTAGAAACATTTTGTCGATTTTTTGCTACTCCATTCAACAAGA
CTTTAAAATAATTTTGTCCGATCATTGCTTGTTAAAATTCCTGCAGAGTG
TGAAACAGTTGATCATCCCGGCAGGACGACGATGAACACGAATACAACGG
CCTCCCACTCTCCCACTCTCCCGCTGTGTCTCTTTCCCCCAGGACGCTGA
CCATGTAATGGTCTACCCTTCTACCGACTCGCCTGGCGGCAGTGCGACCT
TCCAGGGGGCCGTCTCCCTCGAGGTTGAAGTGGTTCCGCTCAGGGGAAAA
CGCCTTCCCGCTTATAGGTACTCTTTTCTGTAATATTTGTGGTTTTCTAA
CCACACGGAAAAGCGCTAGCTCTAGCCCCTCCCGCCAATGTGTACTCGAA
AACAGCCCTTTCGCCGTTCCACGGAAAACCGACTTAGAAATAAGCGGAAC
ACACACGTTGTGTCTGTACAAGAGAGAGGGATCAGTTGAATGCGGACGGG
TTGATGACGCAGGGGAAACCGTGCCTGGGCGGGTTATCACGAGGAATCAG
AGCAGCATCGTTATAGATTTATGGGTTGCGTGTTTTTATCGCCTATCTTC
TTTTTCTTTTCTAATGTTGAAACTATGTAGATATGTGTGTAAGCTCATTC
CCCTAAATTGTGCGCACTTGATCGTGATTCTCCCGATGCTATTCGGATGG
ACGTTCCTAGCCCGGCCTTGATGCTACGCTCGGCGAGCGTCTCCTCCGGC
GCTCCCTGGCGAGCCGTCGTCGGCGAGCGAGATATCGAAGCCTTCGCGAC
CCTCTTACCCGCCCC
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Coding sequence (CDS) from alignment at P-canaliculata_contig9905:6798..8062-

>mRNA_P-canaliculata_contig9905.24024.1 ID=mRNA_P-canaliculata_contig9905.24024.1|Name=mRNA_P-canaliculata_contig9905.24024.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1002bp|location=Sequence derived from alignment at P-canaliculata_contig9905:6798..8062- (Pelvetia canaliculata dioecious)
CCATCGCCCGAGGGCAAAACGGGACGCCTGTCTCCATTCTGGGCAAATTT
TATCTTAAGGATGGTCGGCTGGTACAGCGCCATGGTGTTGGACGCTCGAA
TCTTGACGGAGTTTCACGCAGGAGGCGGCGGAATGGAGTCAGTAGAGGGG
GGGGAATCACTGTCGCCATCAGCTGTCGTAACGACCGAAGTTTTCGTGTC
GTCTTTCGAGGCATGCACCAAGCAACTAGATGACGGATCCGGCGGGGTCA
AGCTTGTGGTGCGCGTGGTCCAGCCATCGCCCGAGGGCAAAACGGGACGC
CTGTCTCCATTCTGGGCAAATTTTATCTTAAGGATGGTCGGCTGGTACAG
CGCCATGGTGTTGGACGCTCGAATCTTGACGGAGTTTCACGCAGGAGGCG
GCGGAATGGAGTCAGTAGAGGGGGGGGAATCACTGTCGCCATCAGCTGTC
GTAACGACCGAAGTTTTCGTGTCGTCTTTCGAGGCATGCACCAAGCAACT
AGATGACGGATCCGGCGGGGTCAAGCTTGTGGTGCGCGTGGTCCAGGACG
CTGACCATGTAATGGTCTACCCTTCTACCGACTCGCCTGGCGGCAGTGCG
ACCTTCCAGGGGGCCGTCTCCCTCGAGGTTGAAGTGGTTCCGCTCAGGGG
AAAACGCCTTCCCGCTTATAGGACGCTGACCATGTAATGGTCTACCCTTC
TACCGACTCGCCTGGCGGCAGTGCGACCTTCCAGGGGGCCGTCTCCCTCG
AGGTTGAAGTGGTTCCGCTCAGGGGAAAACGCCTTCCCGCTTATAGCCCG
GCCTTGATGCTACGCTCGGCGAGCGTCTCCTCCGGCGCTCCCTGGCGAGC
CGTCGTCGGCGAGCGAGATATCGAAGCCTTCGCGACCCTCTTACCCGCCC
CCGGCCTTGATGCTACGCTCGGCGAGCGTCTCCTCCGGCGCTCCCTGGCG
AGCCGTCGTCGGCGAGCGAGATATCGAAGCCTTCGCGACCCTCTTACCCG
CC
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