mRNA_P-canaliculata_contig9905.24022.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig9905.24022.1
Unique NamemRNA_P-canaliculata_contig9905.24022.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9905.24022.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig9905contigP-canaliculata_contig9905:3002..4103 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size278
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817351.9228952-CDS-P-canaliculata_contig9905:3002..32181622817351.9228952-CDS-P-canaliculata_contig9905:3002..3218Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9905 3003..3218 -
1693495241.2398474-CDS-P-canaliculata_contig9905:3002..32181693495241.2398474-CDS-P-canaliculata_contig9905:3002..3218Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9905 3003..3218 -
1622817351.9374511-CDS-P-canaliculata_contig9905:4043..41031622817351.9374511-CDS-P-canaliculata_contig9905:4043..4103Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9905 4044..4103 -
1693495241.250887-CDS-P-canaliculata_contig9905:4043..41031693495241.250887-CDS-P-canaliculata_contig9905:4043..4103Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9905 4044..4103 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig9905.24022.1prot_P-canaliculata_contig9905.24022.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig9905 3003..4103 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig9905.24022.1

>prot_P-canaliculata_contig9905.24022.1 ID=prot_P-canaliculata_contig9905.24022.1|Name=mRNA_P-canaliculata_contig9905.24022.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=92bp
LGKLSCSGETVIDFSGPSVEIDVSGRLAFLRLTISRGGLSVLLWLAALGR
RVPLSPMPSSKPPSKLNSLPSQRNLARGHGTPLVAGSGTGIR
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mRNA from alignment at P-canaliculata_contig9905:3002..4103-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig9905.24022.1 ID=mRNA_P-canaliculata_contig9905.24022.1|Name=mRNA_P-canaliculata_contig9905.24022.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=1102bp|location=Sequence derived from alignment at P-canaliculata_contig9905:3002..4103- (Pelvetia canaliculata dioecious)
CTTGGAAAGCTTTCGTGTAGTGGAGAGACCGTCATCGACTTCTCTGGACC
CTCCGTGGAGGTGGGTGCCTCAGTCGACAGAGTAGGTTGTTTTACACATC
ACTTAAACCCGTACCAGTATATAACTTTGATGTATTTAGCTCCTTATTCT
CTGTACCAGTGTCTAAAAGGGTGGCAGCCGGACGAAATGGTCACGTTGAT
TGTTTTGGAAAGGCCTCGTCGTTGATCTTTTCCTCCTAAAAAGTTTACCC
TTTTGTGTCTGCTATCCCTTATTTTACAAGGGTATGATTGGTAAGGGGAT
GACGGTTCTGTATCCCTCCCTCCCGCCTTTTTTTTCTTATCTTTATCTTC
CAGTGGACCCAATCAACGGACTACGTTACCAATCCCACCTACAAGTACAA
AGGACGTTGCCATCGAACACCTCACTTTAAAACCGTATGTAGCTCCAATG
ATTTACCTGGTATTTACCTCCTTATTATCGATATTGAATATATATCAGTA
GATTGGCGCCAGCCGGACAAAAATATCGCTCATATTATTTTGATAGGCGT
CGCCATAGGTCTTCTCTCCCCCCCAAAAAACAAACAAACAAACTTGCCCT
GGCGTGTCTGCTACCCCTGATTTCTACAGGGGGTTGAATGTCGATTCTGG
ACTGCCCCCTCCAACGCTTTTTTATATTGTCTTTCTCTCTCCAAACGCCT
TTTTATTATCTCTTTCTCTTCCGATGGGCCTAATCAACGTGCTACGTTAC
CAATCCCACGTACACATCCAGCAACGTTGCCATCCCACTCGTGAAACAAA
GTCATCCTGGCACGTCTCCCAATGGCGGAACTTCCCCCCCCCCGCACCCG
CTGTGGGTGTTGTATTTCTTGTCGCGCTCTCGCAGATTGACGTCTCCGGT
CGGCTAGCCTTCCTCCGCCTTACGATTTCACGCGGAGGCCTTTCCGTGCT
GCTGTGGCTCGCGGCTCTAGGACGACGAGTCCCACTATCTCCTATGCCCT
CTTCGAAGCCGCCGTCTAAGTTGAACTCCCTCCCTTCTCAACGGAACTTA
GCCAGGGGACACGGTACACCACTGGTTGCGGGCAGCGGCACTGGCATTCG
GC
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Coding sequence (CDS) from alignment at P-canaliculata_contig9905:3002..4103-

>mRNA_P-canaliculata_contig9905.24022.1 ID=mRNA_P-canaliculata_contig9905.24022.1|Name=mRNA_P-canaliculata_contig9905.24022.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=552bp|location=Sequence derived from alignment at P-canaliculata_contig9905:3002..4103- (Pelvetia canaliculata dioecious)
CTTGGAAAGCTTTCGTGTAGTGGAGAGACCGTCATCGACTTCTCTGGACC
CTCCGTGGAGCTTGGAAAGCTTTCGTGTAGTGGAGAGACCGTCATCGACT
TCTCTGGACCCTCCGTGGAGATTGACGTCTCCGGTCGGCTAGCCTTCCTC
CGCCTTACGATTTCACGCGGAGGCCTTTCCGTGCTGCTGTGGCTCGCGGC
TCTAGGACGACGAGTCCCACTATCTCCTATGCCCTCTTCGAAGCCGCCGT
CTAAGTTGAACTCCCTCCCTTCTCAACGGAACTTAGCCAGGGGACACGGT
ACACCACTGGTTGCGGGCAGCGGCACTGGCATTCGGATTGACGTCTCCGG
TCGGCTAGCCTTCCTCCGCCTTACGATTTCACGCGGAGGCCTTTCCGTGC
TGCTGTGGCTCGCGGCTCTAGGACGACGAGTCCCACTATCTCCTATGCCC
TCTTCGAAGCCGCCGTCTAAGTTGAACTCCCTCCCTTCTCAACGGAACTT
AGCCAGGGGACACGGTACACCACTGGTTGCGGGCAGCGGCACTGGCATTC
GG
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