mRNA_P-canaliculata_contig9905.24023.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig9905.24023.1
Unique NamemRNA_P-canaliculata_contig9905.24023.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9905.24023.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig9905contigP-canaliculata_contig9905:4250..6688 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size502
Cds size501
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817351.8367665-CDS-P-canaliculata_contig9905:4250..43371622817351.8367665-CDS-P-canaliculata_contig9905:4250..4337Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9905 4251..4337 -
1693495241.1974974-CDS-P-canaliculata_contig9905:4250..43371693495241.1974974-CDS-P-canaliculata_contig9905:4250..4337Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9905 4251..4337 -
1622817351.8480208-CDS-P-canaliculata_contig9905:6274..66881622817351.8480208-CDS-P-canaliculata_contig9905:6274..6688Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9905 6275..6688 -
1693495241.2076614-CDS-P-canaliculata_contig9905:6274..66881693495241.2076614-CDS-P-canaliculata_contig9905:6274..6688Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9905 6275..6688 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig9905.24023.1prot_P-canaliculata_contig9905.24023.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig9905 4251..6688 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig9905.24023.1

>prot_P-canaliculata_contig9905.24023.1 ID=prot_P-canaliculata_contig9905.24023.1|Name=mRNA_P-canaliculata_contig9905.24023.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=167bp
SKPGAVLDPSVTSLFSLLSPLFRFDASFEGIRLEVLEGEGAAAVDTEGGL
ASCLECREGDPGVARSAEGENIRARDSGGAKGIFATSECRKESGRSGCSK
FQGEEASVSAVAEIKGARLSLALGSVVAGEDVTGKEIKKVSFSVKWSSAV
LAAGKSFPLDEAQAQSF
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mRNA from alignment at P-canaliculata_contig9905:4250..6688-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig9905.24023.1 ID=mRNA_P-canaliculata_contig9905.24023.1|Name=mRNA_P-canaliculata_contig9905.24023.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=2439bp|location=Sequence derived from alignment at P-canaliculata_contig9905:4250..6688- (Pelvetia canaliculata dioecious)
TCCAAACCCGGGGCTGTGTTAGATCCGTCCGTCACGTCGCTGTTTTCGTT
GCTGTCTCCTCTCTTCCGCTTCGACGCCTCGTTCGAGGGGATCCGGTTGG
AGGTCTTGGAGGGCGAAGGGGCTGCCGCGGTCGATACCGAGGGAGGTTTA
GCTTCTTGTTTGGAGTGCCGTGAGGGGGACCCGGGTGTGGCCAGGTCTGC
GGAAGGCGAAAATATTCGAGCGAGGGATAGTGGTGGAGCAAAGGGTATTT
TTGCTACGTCGGAATGCCGGAAGGAAAGCGGTCGGTCGGGGTGTTCGAAG
TTTCAGGGAGAGGAAGCCAGTGTGAGCGCGGTGGCGGAAATCAAGGGCGC
GCGGTTATCACTAGCGCTTGGTTCTGTGGTGGCCGGCGAGGATGTAACCG
GGAAGGAGATAAAGGTGATTATAAACCTTGTACAAACCAGAGGATACAGC
CCAATATTTGCGATACGAAGGGTTTACTGATTGGTTCTATTAAGATTGTA
ATGTGGCATTACACTCGGGGGGGGGGGGGGGGGGGGGGACTTCCTTTTAC
AAGAGATGTTCATTTTTTTTTGGCATTTTTTCAAGCACAAGCATGGTTTT
TTTTGTGAATTTTTTTTTTCATNNNNNNNNNNTGGCTGGTTGTTTGTTTT
GGGGTTGCGTTTGGGGCGGGGGATTGTTGGGGGGGCGGGGGTGGGGGGGG
GGTGTGGGGTGGAGACTTCCTTTCACAAGAGATGTACATATTTATTTGGC
ATTTATGCAAGCACAAGCATGGTTTTTATCGAGAATTAGCTCATGCAGTT
TGTATTCAATCGTAAGGGATATATTTTGCCTTTGTCTAATAAAACTAGTT
AAAGCACATATTTTGTCTTGCCACTGATGAGTTCTGTCGGTAGAGGCAAA
GAAATGGGCCGGGGGAAACTATTGTGTCACCCATTTCCGGGGATCCATGT
ATGCAATAAACATTAAGCAGCACACGCATCACTCCGAAACCGCGAGGAAA
TCTGAGGACAATCTGAGAACTCTTGGGATCCACCGTCAATCAATCCTCCG
GTTCTTCTCAGTCGCCTCGGTCGAGTGTTAGGGGTACGATTTTTCCCTCC
CTCGCCATCATATTATTTGGTCCATGGTGATAATACACCTGAAAAGGCAG
CACCCGTTACTGGAACTACCTTGAGGACTACTGGCCCTGTGCTGGCGGAC
TCTCGGCAGTGACCGCCATCGGTAGGTTATTGCGTGACCCGATGAATCCG
GTCGCGGAAAGCGGGAGGAATCTCGCTAGTAAGGACCAGGTTCAGCCTGA
GTGTCAATGAGCAAGCTGACGCGGGACGTGACGACCGGACCTGTCTCGCG
AGACTGAATTCTCAGGCGCGAATGGGTACGGGGAACTATCCATTTTTCCC
TGTTCAGCTGACCACGAGCAGGATTGTCAACCTTACCAGGTTGATCCATA
CACTGCTGTAAGTGCTGACCATTCATACATACATTTTCGATTTGAGAAAC
TCGACCCGACCTCTCCGGGTTCCAGGGATAAACGAATGCGCTGGCTCTCC
TGGAAAGCGACGGAAGGCTTGCTAATTAAACCCTGTCGTGTACTGTTATG
AAAATATAACCCAAACGTACAAGCACGTGGCATGCGTGTCATATTGAATC
ATCTACGCATGGAACAACTGAGCACTTGATACTCGGATATACTCAAGGCA
CGTACAGCACGCATCATATCGGTGTATGGGTATACGCCATGCGCAGCATG
CACCAGTACGGGAAACTATGACAAAGGAAAGGTATAGAAAGTATGTAAAT
ATAGTGTACATCCTCGTACCAGGAGATTTTGGCGGTTTCCATCAGCGTAT
CTAATAAAAGTTGAAGTAATCCCACAAAGGCCCGTTAATAGATACACAGA
AGGATAGGAGACGTTCGGATATATTTTTGGACTACTGGTAAATATTTACG
CATGTAGCCATGACACATATTTGTAAGTACACCCACTACTAATGCTTATT
CCATGTGGGAAGAGGGATGGTCCCCAGTAGACCCGGGTATGCTTTCCTTC
CTGTCTTTCACCCCCAGGATTTCTGCGTCTGTCCCCGGCTACCCCCCCCC
CCCCCCCCCCCCCCCCCAACCCCACACAGGTTGTCACGCTCTGTCGTGGA
GCTGCTTTTCCTCCCCCCNNNNNNNNNNTTTGGGAGGGGGGTGGGCCCCC
GGTGACCCCGGGTTTGCTTCCCTCCCTGCATTCCCCCCCTAGGTTTCTTG
CTTCTGCCCCGGCCCCCCCCCCCCCCCCCCCAATCCCAAACTTAATCGAG
GTTTGCTCCGTTGCGGTGCTGTATTTGTTTGCCCCCTCCTCGCGGAAAAA
GAAGGTAAGCTTCTCAGTCAAGTGGTCGAGCGCCGTTCTCGCTGCGGGCA
AGAGCTTTCCTCTCGACGAGGCCCAAGCGCAGAGCTTCT
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Coding sequence (CDS) from alignment at P-canaliculata_contig9905:4250..6688-

>mRNA_P-canaliculata_contig9905.24023.1 ID=mRNA_P-canaliculata_contig9905.24023.1|Name=mRNA_P-canaliculata_contig9905.24023.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1002bp|location=Sequence derived from alignment at P-canaliculata_contig9905:4250..6688- (Pelvetia canaliculata dioecious)
TCCAAACCCGGGGCTGTGTTAGATCCGTCCGTCACGTCGCTGTTTTCGTT
GCTGTCTCCTCTCTTCCGCTTCGACGCCTCGTTCGAGGGGATCCGGTTGG
AGGTCTTGGAGGGCGAAGGGGCTGCCGCGGTCGATACCGAGGGAGGTTTA
GCTTCTTGTTTGGAGTGCCGTGAGGGGGACCCGGGTGTGGCCAGGTCTGC
GGAAGGCGAAAATATTCGAGCGAGGGATAGTGGTGGAGCAAAGGGTATTT
TTGCTACGTCGGAATGCCGGAAGGAAAGCGGTCGGTCGGGGTGTTCGAAG
TTTCAGGGAGAGGAAGCCAGTGTGAGCGCGGTGGCGGAAATCAAGGGCGC
GCGGTTATCACTAGCGCTTGGTTCTGTGGTGGCCGGCGAGGATGTAACCG
GGAAGGAGATAAAGTCCAAACCCGGGGCTGTGTTAGATCCGTCCGTCACG
TCGCTGTTTTCGTTGCTGTCTCCTCTCTTCCGCTTCGACGCCTCGTTCGA
GGGGATCCGGTTGGAGGTCTTGGAGGGCGAAGGGGCTGCCGCGGTCGATA
CCGAGGGAGGTTTAGCTTCTTGTTTGGAGTGCCGTGAGGGGGACCCGGGT
GTGGCCAGGTCTGCGGAAGGCGAAAATATTCGAGCGAGGGATAGTGGTGG
AGCAAAGGGTATTTTTGCTACGTCGGAATGCCGGAAGGAAAGCGGTCGGT
CGGGGTGTTCGAAGTTTCAGGGAGAGGAAGCCAGTGTGAGCGCGGTGGCG
GAAATCAAGGGCGCGCGGTTATCACTAGCGCTTGGTTCTGTGGTGGCCGG
CGAGGATGTAACCGGGAAGGAGATAAAGAAGGTAAGCTTCTCAGTCAAGT
GGTCGAGCGCCGTTCTCGCTGCGGGCAAGAGCTTTCCTCTCGACGAGGCC
CAAGCGCAGAGCTTCAAGGTAAGCTTCTCAGTCAAGTGGTCGAGCGCCGT
TCTCGCTGCGGGCAAGAGCTTTCCTCTCGACGAGGCCCAAGCGCAGAGCT
TC
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