prot_P-canaliculata_contig98952.24011.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig98952.24011.1
Unique Nameprot_P-canaliculata_contig98952.24011.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length42
Homology
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BLAST of mRNA_P-canaliculata_contig98952.24011.1 vs. uniprot
Match: D8LGS5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGS5_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 8.740e-11
Identity = 36/59 (61.02%), Postives = 38/59 (64.41%), Query Frame = 0 
Query:    1 VVATGAEDSTVRLWDLR-----------------ATSSSRVARCLCRCFDGEAVTSVVF 42
            +VATGAEDSTVRLWDLR                  TSS RVA CLCRCF GEAV+SVVF
Sbjct:   37 LVATGAEDSTVRLWDLRDGATARTPGGSGTTSSGTTSSPRVAMCLCRCFGGEAVSSVVF 95
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig98952.24011.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LGS5_ECTSI8.740e-1161.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 1..42
e-value: 1.7E-5
score: 25.9
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 2..16
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 1..24
score: 11.912
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 1..24
score: 11.26

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig98952contigP-canaliculata_contig98952:603..728 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig98952.24011.1mRNA_P-canaliculata_contig98952.24011.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig98952 603..728 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig98952.24011.1 ID=prot_P-canaliculata_contig98952.24011.1|Name=mRNA_P-canaliculata_contig98952.24011.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=42bp
VVATGAEDSTVRLWDLRATSSSRVARCLCRCFDGEAVTSVVF
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR019775WD40_repeat_CS
IPR001680WD40_repeat
IPR017986WD40_repeat_dom