mRNA_P-canaliculata_contig98864.24002.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig98864.24002.1
Unique NamemRNA_P-canaliculata_contig98864.24002.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig98864.24002.1 vs. uniprot
Match: A0A848UBG7_9GAMM (Uncharacterized protein n=1 Tax=Granulosicoccus sp. TaxID=1943584 RepID=A0A848UBG7_9GAMM)

HSP 1 Score: 186 bits (473), Expect = 1.900e-55
Identity = 103/231 (44.59%), Postives = 158/231 (68.40%), Query Frame = 1 
Query:    1 MSFTLPATHLLRQYLRFAAVVVFLLLMIRAGYALWRLPAIEAGGDPLELFLTGLRFDLSLVGALCLVPVSVGPVLAMFDATRVVAKWFVLLWLFAALVLVLVTELLTPQLLAGEGVRPDASTFAELPALTASVGGLVADHPVPVTIGVLLAILILAAYVTRVESARFLRYPVSRGPAIALALVGGLVCLIAARSAIDPTAPALSVADARLGGEPIVDQIAMNSAWTTLRSL 693
            M  TLPATHLLRQ+L F   VVFLL +IRA Y LW+ P +      + LFL GLR+D++LVG +C+VPV +G +L+M D TR+ A++ + L+L   L+LVL+ EL+TP  L  +G+RPD      +    + +  +V++H +P+ +G LL +LIL A+ +R+E  RFL+Y +S   A+ LA++GGL C++A RS +D  +PALS+AD+++  +  V+ +A+N+A+ TL SL
Sbjct:    1 MKSTLPATHLLRQFLLFVLTVVFLLTLIRAAYGLWQYPKLADSDALVPLFLQGLRYDIALVGLVCIVPVILGTLLSMLDTTRLFARFLITLFLTGGLLLVLLLELITPWFLQTQGLRPDLQLLNGVENPGSVLSTIVSEHAIPLAVGALLCVLILIAFWSRMELQRFLKYRLSVPAALLLAILGGLACVVAIRSNVDLRSPALSLADSQISTDETVNDLALNTAYKTLYSL 231
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig98864.24002.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A848UBG7_9GAMM1.900e-5544.59Uncharacterized protein n=1 Tax=Granulosicoccus sp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig98864contigP-canaliculata_contig98864:300..1019 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score63.9
Seed ortholog evalue1.1e-07
Seed eggNOG ortholog983545.Glaag_4547
Preferred namemdoB
KEGG koko:K01002
KEGG Pathwayko01100,map01100
EggNOG free text desc.COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily
EggNOG OGs1MVCM@1224,1RNJ3@1236,465CD@72275,COG1368@1,COG1368@2
EC2.7.8.20
COG Functional cat.M
Best tax levelAlteromonadaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categorysignal peptide
Exons1
Model size720
Cds size720
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817350.032245-CDS-P-canaliculata_contig98864:299..10191622817350.032245-CDS-P-canaliculata_contig98864:299..1019Pelvetia canaliculata dioeciousCDSP-canaliculata_contig98864 300..1019 +
1693495239.8100927-CDS-P-canaliculata_contig98864:299..10191693495239.8100927-CDS-P-canaliculata_contig98864:299..1019Pelvetia canaliculata dioeciousCDSP-canaliculata_contig98864 300..1019 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig98864.24002.1prot_P-canaliculata_contig98864.24002.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig98864 300..1019 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig98864.24002.1

>prot_P-canaliculata_contig98864.24002.1 ID=prot_P-canaliculata_contig98864.24002.1|Name=mRNA_P-canaliculata_contig98864.24002.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=240bp
MSFTLPATHLLRQYLRFAAVVVFLLLMIRAGYALWRLPAIEAGGDPLELF
LTGLRFDLSLVGALCLVPVSVGPVLAMFDATRVVAKWFVLLWLFAALVLV
LVTELLTPQLLAGEGVRPDASTFAELPALTASVGGLVADHPVPVTIGVLL
AILILAAYVTRVESARFLRYPVSRGPAIALALVGGLVCLIAARSAIDPTA
PALSVADARLGGEPIVDQIAMNSAWTTLRSLGASVLPGS*
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mRNA from alignment at P-canaliculata_contig98864:300..1019+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig98864.24002.1 ID=mRNA_P-canaliculata_contig98864.24002.1|Name=mRNA_P-canaliculata_contig98864.24002.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=720bp|location=Sequence derived from alignment at P-canaliculata_contig98864:300..1019+ (Pelvetia canaliculata dioecious)
ATGAGCTTTACTCTGCCCGCGACCCACCTGCTGCGGCAGTATCTACGCTT
CGCCGCGGTCGTGGTGTTCCTGCTGCTGATGATCAGGGCGGGCTACGCCC
TGTGGCGTCTCCCGGCCATCGAGGCGGGCGGCGACCCGCTCGAATTGTTC
CTGACCGGTCTCCGGTTCGATCTCTCGCTCGTCGGGGCGCTGTGCCTCGT
GCCGGTGAGCGTCGGTCCGGTGCTCGCGATGTTCGACGCGACGCGTGTGG
TGGCGAAGTGGTTCGTGCTCCTCTGGCTGTTCGCCGCGCTCGTGCTGGTG
CTTGTCACCGAGCTGCTGACCCCGCAGCTTCTGGCCGGCGAGGGCGTGCG
GCCGGACGCCTCCACCTTCGCCGAGCTCCCCGCACTCACCGCCTCGGTCG
GCGGGCTGGTCGCCGATCACCCGGTACCCGTCACGATCGGCGTGCTGCTC
GCGATCCTGATCCTCGCGGCCTACGTCACCCGCGTCGAGAGCGCGCGCTT
CCTGCGCTACCCCGTCTCGCGCGGACCGGCGATCGCGCTGGCGCTCGTCG
GCGGCCTTGTCTGCCTGATCGCCGCGCGCTCGGCGATCGACCCGACGGCA
CCGGCGCTGTCGGTCGCGGACGCCCGCCTCGGTGGCGAGCCGATCGTCGA
TCAGATCGCGATGAACAGTGCCTGGACGACGCTGCGCTCCCTCGGCGCGT
CGGTGCTGCCCGGGAGCTGA
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Coding sequence (CDS) from alignment at P-canaliculata_contig98864:300..1019+

>mRNA_P-canaliculata_contig98864.24002.1 ID=mRNA_P-canaliculata_contig98864.24002.1|Name=mRNA_P-canaliculata_contig98864.24002.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1440bp|location=Sequence derived from alignment at P-canaliculata_contig98864:300..1019+ (Pelvetia canaliculata dioecious)
ATGAGCTTTACTCTGCCCGCGACCCACCTGCTGCGGCAGTATCTACGCTT
CGCCGCGGTCGTGGTGTTCCTGCTGCTGATGATCAGGGCGGGCTACGCCC
TGTGGCGTCTCCCGGCCATCGAGGCGGGCGGCGACCCGCTCGAATTGTTC
CTGACCGGTCTCCGGTTCGATCTCTCGCTCGTCGGGGCGCTGTGCCTCGT
GCCGGTGAGCGTCGGTCCGGTGCTCGCGATGTTCGACGCGACGCGTGTGG
TGGCGAAGTGGTTCGTGCTCCTCTGGCTGTTCGCCGCGCTCGTGCTGGTG
CTTGTCACCGAGCTGCTGACCCCGCAGCTTCTGGCCGGCGAGGGCGTGCG
GCCGGACGCCTCCACCTTCGCCGAGCTCCCCGCACTCACCGCCTCGGTCG
GCGGGCTGGTCGCCGATCACCCGGTACCCGTCACGATCGGCGTGCTGCTC
GCGATCCTGATCCTCGCGGCCTACGTCACCCGCGTCGAGAGCGCGCGCTT
CCTGCGCTACCCCGTCTCGCGCGGACCGGCGATCGCGCTGGCGCTCGTCG
GCGGCCTTGTCTGCCTGATCGCCGCGCGCTCGGCGATCGACCCGACGGCA
CCGGCGCTGTCGGTCGCGGACGCCCGCCTCGGTGGCGAGCCGATCGTCGA
TCAGATCGCGATGAACAGTGCCTGGACGACGCTGCGCTCCCTCGGCGCGT
CGGTGCTGCCCGGGAGCTGAATGAGCTTTACTCTGCCCGCGACCCACCTG
CTGCGGCAGTATCTACGCTTCGCCGCGGTCGTGGTGTTCCTGCTGCTGAT
GATCAGGGCGGGCTACGCCCTGTGGCGTCTCCCGGCCATCGAGGCGGGCG
GCGACCCGCTCGAATTGTTCCTGACCGGTCTCCGGTTCGATCTCTCGCTC
GTCGGGGCGCTGTGCCTCGTGCCGGTGAGCGTCGGTCCGGTGCTCGCGAT
GTTCGACGCGACGCGTGTGGTGGCGAAGTGGTTCGTGCTCCTCTGGCTGT
TCGCCGCGCTCGTGCTGGTGCTTGTCACCGAGCTGCTGACCCCGCAGCTT
CTGGCCGGCGAGGGCGTGCGGCCGGACGCCTCCACCTTCGCCGAGCTCCC
CGCACTCACCGCCTCGGTCGGCGGGCTGGTCGCCGATCACCCGGTACCCG
TCACGATCGGCGTGCTGCTCGCGATCCTGATCCTCGCGGCCTACGTCACC
CGCGTCGAGAGCGCGCGCTTCCTGCGCTACCCCGTCTCGCGCGGACCGGC
GATCGCGCTGGCGCTCGTCGGCGGCCTTGTCTGCCTGATCGCCGCGCGCT
CGGCGATCGACCCGACGGCACCGGCGCTGTCGGTCGCGGACGCCCGCCTC
GGTGGCGAGCCGATCGTCGATCAGATCGCGATGAACAGTGCCTGGACGAC
GCTGCGCTCCCTCGGCGCGTCGGTGCTGCCCGGGAGCTGA
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